Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXO8 Gene 0 43.32 54.53 38.75 50.22 63.23 51.36 48.82 38.07 36.57 61.68 58.67 45.53 39.35 68.52 97.37 45.52 58.37 24.94 19.65 29.12 33.39 46.08 29.73 2 393674 Transcript 0 8.34 17.91 11.39 9.60 12.44 16.55 15.50 8.53 10.88 22.60 6.12 14.15 13.11 13.63 13.44 6.63 12.62 11.92 5.87 16.26 8.15 11.86 5.80 3 296517 Transcript 1 38.53 24.93 7.81 22.51 47.37 35.32 33.52 17.05 18.81 16.22 40.38 0.00 0.00 16.83 0.00 92.63 124.82 9.74 39.53 9.40 55.41 61.72 63.94 4 356961 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 2.76 14.55 9.40 6.67 7.11 16.40 17.01 4.26 7.59 13.27 8.59 0.61 2.96 15.41 7.13 12.29 20.46 23.54 10.08 28.78 14.42 6.94 11.13 6 E1_Ab KnownBoundary 0 14.52 50.12 20.49 8.42 33.70 35.15 33.39 10.56 11.86 14.53 24.37 0.00 0.00 40.20 33.25 17.35 48.62 34.12 4.05 40.78 44.48 12.31 14.77 7 ER1b ExonRegion 1 20.51 25.83 26.97 19.51 24.83 37.94 26.20 17.83 27.10 44.05 77.05 11.88 12.08 78.40 62.18 59.44 78.53 47.82 19.20 39.47 74.00 24.66 29.51 8 E1_Da NovelBoundary 0 2.82 16.25 6.45 2.06 0.00 24.99 34.23 0.00 10.10 9.37 2.68 0.00 0.00 29.67 0.00 4.19 22.72 36.40 9.51 12.14 0.00 0.00 0.00 9 E1a_E2a KnownJunction 1 33.56 20.85 38.29 27.74 3.99 8.06 8.30 27.44 40.97 56.33 23.95 6.30 0.00 62.39 62.55 141.84 46.00 53.14 32.00 20.13 35.89 27.56 78.45 10 I1_AR1 ActiveIntronRegion 1 4.11 10.83 1.20 0.99 1.30 13.36 8.13 0.00 0.00 0.83 12.08 0.00 0.00 15.95 4.23 10.11 6.35 2.13 7.89 14.47 14.99 1.01 4.28 11 ER2a ExonRegion 1 24.22 18.53 34.04 24.68 7.43 8.15 10.15 25.35 32.80 46.77 37.58 7.22 6.25 59.55 70.60 121.86 39.98 55.02 23.71 18.44 39.18 26.62 61.67 12 ER2b ExonRegion 0 35.70 66.13 29.90 44.94 73.82 122.27 72.84 27.82 45.17 64.60 95.14 28.20 39.01 96.53 133.76 80.71 88.86 50.39 26.42 29.14 70.88 54.69 54.35 13 E2_Da KnownBoundary 0 92.39 112.22 35.39 63.43 62.39 28.05 79.49 31.05 56.42 98.88 113.24 56.72 74.67 147.04 174.42 96.90 84.06 55.42 55.34 35.73 79.32 118.24 87.75 14 ER2c ExonRegion 0 51.29 68.72 34.67 52.82 63.35 49.22 49.56 41.96 52.18 85.50 112.17 62.71 59.15 151.27 180.14 106.18 135.63 46.09 40.13 36.74 78.11 73.41 63.82 15 E2_Ac KnownBoundary 0 70.53 51.70 26.37 49.28 58.74 60.14 49.73 46.45 41.29 89.37 63.33 49.37 58.92 152.69 209.28 61.69 62.55 37.56 21.74 26.01 45.34 39.68 57.19 16 E2b_E3a KnownJunction 0 108.32 41.97 38.79 55.90 67.74 45.20 50.96 35.36 42.24 75.72 101.29 93.78 61.03 176.88 165.77 71.69 80.88 41.87 48.66 27.93 38.61 76.54 73.75 17 ER2d ExonRegion 0 72.71 40.61 32.93 57.99 50.15 54.42 46.38 42.71 48.13 84.28 89.35 68.71 51.59 162.31 175.39 75.36 90.61 41.96 37.61 25.19 46.70 63.38 64.99 18 E3a_E3b KnownJunction 0 38.53 24.93 7.81 22.51 47.37 35.32 33.52 17.05 18.81 16.22 40.38 0.00 0.00 16.83 0.00 92.63 124.82 9.74 39.53 9.40 55.41 61.72 63.94 19 E3_Ab NovelBoundary 1 81.64 54.66 25.84 50.64 106.20 57.75 47.21 28.22 44.39 57.54 117.29 73.37 58.44 114.55 41.41 112.02 183.36 38.51 59.48 24.74 71.04 82.42 90.06 20 ER3a ExonRegion 0 97.51 46.77 36.94 62.21 90.40 63.40 54.00 40.00 49.85 80.86 144.69 85.35 67.67 174.59 138.43 125.47 175.65 48.04 70.53 31.31 78.55 99.41 105.93 21 ER3b ExonRegion 0 96.65 53.55 38.39 64.96 100.79 68.46 49.43 38.03 49.82 79.52 150.12 85.15 71.91 169.99 142.16 112.94 183.75 48.04 75.39 40.43 78.60 99.31 105.72 22 ER3c ExonRegion 0 58.44 69.35 35.86 56.93 97.93 75.84 72.85 51.05 40.56 84.77 97.31 96.11 66.81 154.78 154.90 107.40 102.60 33.49 34.52 32.42 55.61 83.85 63.22 23 E3b_E4a KnownJunction 0 65.34 67.69 40.95 44.98 111.97 22.20 81.39 38.86 36.34 66.83 92.55 73.97 66.55 123.96 137.09 58.02 42.08 19.90 25.04 12.66 34.66 78.44 52.07 24 I3_SR4 SilentIntronRegion 0 5.75 9.77 2.58 16.05 22.62 16.25 15.66 9.77 8.11 12.95 2.07 7.92 4.49 1.53 1.83 2.01 1.51 2.82 2.02 11.15 0.61 4.29 0.35 25 E4_Aa NovelBoundary 0 6.59 21.84 14.58 22.71 30.48 5.79 25.13 13.84 3.47 11.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.58 12.85 0.00 0.00 0.00 26 ER4a ExonRegion 0 76.14 134.83 46.02 86.21 121.51 86.33 101.01 46.35 64.69 108.07 100.09 76.18 43.67 117.05 160.64 67.16 72.15 19.77 24.81 35.60 35.02 64.15 38.13 27 E4a_E5a KnownJunction 0 131.13 139.32 83.97 117.97 151.36 108.63 153.38 81.98 64.24 143.77 106.87 38.41 51.13 133.73 172.32 53.32 69.28 30.18 38.50 43.98 34.04 95.10 42.85 28 ER5a ExonRegion 0 95.91 88.17 83.32 125.05 137.22 100.00 100.44 77.94 70.78 117.80 120.81 84.92 66.76 111.69 189.36 74.54 90.18 32.42 33.55 40.55 35.53 91.79 42.83 29 E5a_E6a KnownJunction 0 80.90 90.38 77.05 114.90 111.04 90.29 102.06 84.69 73.70 94.42 102.24 62.12 79.38 72.64 166.51 59.04 82.56 51.19 30.12 26.91 44.11 76.73 70.00 30 ER6a ExonRegion 0 78.06 87.42 72.77 91.60 111.73 62.06 68.84 76.40 56.00 92.17 68.53 82.98 73.68 74.45 153.97 43.72 64.99 13.78 21.73 31.46 25.54 72.20 32.85 31 E6_Da KnownBoundary 1 6.82 43.48 26.26 35.99 25.98 15.39 12.50 30.11 18.20 42.93 12.63 38.71 53.24 19.01 62.43 0.00 9.54 0.00 0.00 13.10 15.32 31.60 0.00 32 ER6b ExonRegion 1 13.92 21.26 13.39 12.53 17.76 16.70 13.99 12.80 14.18 31.93 3.66 27.69 23.26 11.86 19.74 0.97 4.78 0.30 1.65 3.73 1.89 16.79 0.48 33 IG30_SR33 SilentIntergenicRegion 0 2.65 15.00 2.98 12.63 20.07 3.10 6.12 4.16 6.24 9.19 0.82 4.01 3.39 1.04 2.37 1.02 0.60 1.51 1.61 6.54 0.18 3.15 1.60 34 IG30_AR39 ActiveIntergenicRegion 0 0.00 1.39 0.77 6.78 39.60 5.61 1.32 1.73 0.28 4.78 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.21 0.00 5.84 0.00 0.00 0.00 35 IG30_AR37 ActiveIntergenicRegion 0 0.72 2.12 1.51 3.63 25.17 2.56 1.08 1.86 1.87 2.32 0.00 0.61 0.33 0.89 0.17 0.00 0.28 0.40 0.54 3.86 0.00 0.74 0.50 36 IG30_SR31 SilentIntergenicRegion 0 7.27 5.29 9.12 20.49 96.64 15.82 4.76 4.73 4.55 3.70 0.00 0.22 0.16 0.43 0.92 0.09 0.20 1.55 1.31 24.22 0.14 1.09 0.61 37 IG30_AR34 ActiveIntergenicRegion 0 10.58 10.87 28.74 37.20 163.60 37.89 5.85 12.53 6.03 8.63 0.00 0.45 0.00 0.00 1.13 0.00 0.00 0.40 0.41 58.20 0.00 0.26 0.00 38 IG30_SR30 SilentIntergenicRegion 0 4.11 2.91 13.49 14.52 79.33 33.10 0.70 3.97 0.30 0.51 0.00 0.00 0.00 0.03 0.00 0.00 0.07 0.17 0.13 52.87 0.44 0.00 0.00 39 IG30_AR33 ActiveIntergenicRegion 0 5.74 4.64 9.44 39.24 74.60 48.79 0.18 3.42 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 106.74 0.00 0.00 0.00 40 IG30_SR29 SilentIntergenicRegion 0 8.51 13.41 12.60 47.93 106.62 155.39 0.31 2.72 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 133.69 0.58 0.00 0.00 41 IG30_AR32 ActiveIntergenicRegion 0 7.91 17.22 9.83 49.59 117.15 159.51 0.20 3.06 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 123.94 0.23 0.00 0.00 42 IG30_AR31 ActiveIntergenicRegion 0 6.35 19.66 9.80 58.15 103.91 163.51 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 119.86 0.00 0.00 0.00 43 IG30_SR28 SilentIntergenicRegion 0 14.56 23.37 10.92 79.88 68.10 149.97 0.12 1.33 0.54 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.08 73.15 0.22 0.00 0.00 44 IG30_AR30 ActiveIntergenicRegion 0 9.61 16.96 12.53 120.70 45.20 74.73 0.00 1.23 0.49 0.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 39.67 0.00 0.00 0.00 45 IG30_AR29 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.69 0.00 0.00 0.00 46 IG30_AR27 ActiveIntergenicRegion 0 2.89 1.75 11.49 3.14 1.57 1.56 0.28 2.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.01 2.97 24.19 0.00 0.00 0.00 47 IG30_AR26 ActiveIntergenicRegion 0 2.78 7.58 2.98 2.81 64.17 16.18 2.99 2.81 6.03 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 12.87 40.76 0.00 0.00 0.00 48 IG30_SR23 SilentIntergenicRegion 0 2.12 1.77 8.23 1.95 5.65 2.91 0.89 1.71 0.29 0.65 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.33 0.89 28.10 0.02 0.00 0.00 49 IG30_AR25 ActiveIntergenicRegion 0 9.56 5.97 36.99 10.11 22.76 8.83 2.02 5.48 1.14 3.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 3.03 39.95 0.12 0.00 0.00 50 IG30_AR24 ActiveIntergenicRegion 0 17.56 54.00 169.94 158.41 150.48 175.58 395.23 98.65 134.75 117.93 0.25 0.00 0.00 0.00 0.00 0.00 0.00 40.03 184.41 295.51 0.70 1.73 0.37 51 IG30_SR21 SilentIntergenicRegion 0 7.32 33.14 61.85 60.87 78.04 42.26 250.44 37.55 28.14 27.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.15 72.75 155.67 0.00 0.95 0.14 52 IG30_AR23 ActiveIntergenicRegion 0 14.61 32.93 83.75 100.84 136.53 70.67 406.78 47.28 32.47 42.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.25 73.86 164.39 0.23 0.84 0.00 53 IG30_SR20 SilentIntergenicRegion 0 30.34 53.12 191.57 184.77 199.15 71.51 425.65 77.76 51.03 40.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.42 93.43 179.32 0.19 1.29 0.26 54 IG30_AR22 ActiveIntergenicRegion 0 41.61 65.57 307.29 230.42 235.11 94.18 632.98 125.09 129.55 130.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.87 223.88 237.00 0.48 1.25 1.29 55 IG30_SR19 SilentIntergenicRegion 0 38.35 35.90 227.82 213.72 154.50 49.66 482.59 50.58 43.77 33.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.08 84.96 193.51 0.00 0.73 0.94 56 IG30_AR21 ActiveIntergenicRegion 0 30.95 34.98 239.86 183.22 111.84 32.81 345.17 43.53 31.06 31.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.60 70.10 168.39 0.00 0.14 0.00 57 IG30_SR18 SilentIntergenicRegion 0 28.30 43.78 319.89 177.24 101.20 34.98 291.25 45.51 25.79 30.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.83 78.10 179.97 0.12 0.56 0.00 58 IG30_AR20 ActiveIntergenicRegion 0 6.15 23.73 89.47 61.01 38.03 15.95 120.77 25.39 8.64 12.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 33.27 135.05 0.00 0.43 0.00 59 IG30_SR17 SilentIntergenicRegion 0 17.46 37.08 177.35 116.23 70.76 18.62 164.63 45.07 20.43 21.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.44 49.96 188.86 1.45 0.34 0.00 60 IG30_AR19 ActiveIntergenicRegion 0 23.25 34.20 281.29 152.04 114.71 20.59 231.91 57.66 28.35 27.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.39 84.23 235.65 0.00 0.00 0.00 61 IG30_AR18 ActiveIntergenicRegion 0 19.00 32.87 163.70 92.42 47.65 18.58 133.16 32.90 16.77 20.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.03 55.83 206.72 0.00 0.35 0.00 62 IG30_SR16 SilentIntergenicRegion 0 3.97 18.50 16.43 40.70 40.02 22.89 118.69 16.58 25.88 21.71 0.00 0.00 0.00 0.01 0.00 0.00 0.00 17.91 80.13 185.55 0.11 0.67 0.09 63 IG30_SR14 SilentIntergenicRegion 0 1.09 0.87 6.02 2.61 5.39 1.85 1.70 0.83 0.43 0.15 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.89 19.04 0.00 0.00 0.00 64 IG30_AR14 ActiveIntergenicRegion 0 0.00 2.94 5.32 2.87 7.36 0.35 2.29 0.00 0.01 0.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.36 0.00 0.00 0.00 65 IG30_AR12 ActiveIntergenicRegion 0 4.13 10.94 14.60 31.89 385.67 23.13 84.00 1.40 2.66 10.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 256.93 126.58 0.00 0.00 0.00 66 IG30_SR12 SilentIntergenicRegion 0 0.47 1.97 5.32 9.19 19.84 1.30 10.08 1.13 0.72 1.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.98 14.01 26.02 0.00 0.00 0.00 67 IG30_AR11 ActiveIntergenicRegion 0 1.59 0.72 8.03 17.72 131.48 27.67 45.93 2.72 2.45 18.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.37 87.37 79.56 0.00 0.00 0.00 68 IG30_SR11 SilentIntergenicRegion 0 1.40 2.20 9.63 10.38 57.31 2.00 22.56 1.29 1.16 3.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 10.46 23.13 0.00 0.02 0.00 69 IG30_SR9 SilentIntergenicRegion 0 0.32 2.39 3.76 7.49 18.92 2.48 9.58 0.17 0.91 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.29 16.92 30.11 0.02 0.00 0.00 70 IG30_SR8 SilentIntergenicRegion 0 0.82 2.85 5.48 16.82 41.86 2.75 14.17 0.25 0.53 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 24.53 24.42 0.00 0.00 0.00 71 IG30_SR7 SilentIntergenicRegion 0 1.21 3.66 7.36 13.55 49.90 3.60 13.49 0.58 1.18 3.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 15.78 20.49 0.13 0.00 0.00 72 IG30_AR6 ActiveIntergenicRegion 0 5.79 46.97 83.42 123.25 331.31 31.62 82.10 7.39 13.60 31.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.59 206.74 136.38 0.00 0.00 0.10 73 IG30_SR6 SilentIntergenicRegion 0 0.75 3.04 4.32 19.65 87.57 7.08 17.05 4.48 5.69 9.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 31.81 31.53 0.00 0.00 0.00 74 IG30_AR5 ActiveIntergenicRegion 0 0.55 0.00 3.04 4.75 55.33 3.25 3.76 0.28 0.64 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.73 17.98 0.00 0.00 0.00 75 IG30_SR5 SilentIntergenicRegion 0 0.51 5.92 7.65 26.33 126.96 12.33 25.83 1.94 5.52 9.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 47.79 33.30 0.00 0.00 0.00 76 IG30_AR4 ActiveIntergenicRegion 0 0.54 7.02 8.59 49.21 195.96 15.64 27.26 3.11 8.07 12.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 58.43 40.57 0.00 0.00 0.00 77 IG30_SR4 SilentIntergenicRegion 0 0.31 6.31 6.36 19.31 99.63 6.66 14.24 1.65 2.77 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.39 15.46 16.23 0.00 0.00 0.00 78 IG30_AR2 ActiveIntergenicRegion 0 0.00 2.85 0.00 2.88 100.42 0.00 7.48 0.00 0.00 0.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.02 11.63 0.00 0.00 0.00 79 IG30_SR2 SilentIntergenicRegion 0 0.05 0.49 0.58 1.59 30.62 0.41 2.70 0.16 0.51 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 3.62 3.40 0.01 0.02 0.00 80 IG30_AR1 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.92 29.34 0.00 2.17 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.44 3.36 0.00 0.00 0.00