Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 WWC2 Gene 0 8.79 3.31 6.39 9.51 8.09 15.22 5.72 5.35 11.58 3.29 0.00 45.29 0.09 0.41 0.07 0.00 0.42 8.05 4.68 4.48 26.73 54.47 37.26 2 403733 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.65 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.71 1.22 0.00 1.55 3 378925 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 281445 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 448232 Transcript 0 0.57 0.00 0.81 1.29 0.00 2.61 0.00 0.95 0.96 0.00 0.00 3.79 0.00 0.00 0.00 0.00 0.00 0.00 0.86 2.32 2.19 3.85 11.07 6 427431 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 438543 Transcript 0 0.40 0.24 0.37 0.16 0.01 0.31 0.23 0.20 0.46 0.07 0.00 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.65 0.83 0.97 0.51 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 5.30 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.77 0.00 1.42 2.45 0.00 3.10 9 ER1b ExonRegion 0 0.00 0.65 0.08 0.00 0.00 2.69 1.14 1.26 3.71 1.03 0.00 2.75 0.00 0.00 0.00 0.00 0.00 5.06 1.11 2.64 22.90 9.20 11.94 10 E1a_E2a KnownJunction 0 0.00 9.27 2.45 0.00 0.00 0.00 0.00 1.77 16.38 3.12 0.00 26.11 0.00 0.00 0.00 0.00 0.00 11.07 3.67 7.41 36.45 26.88 39.61 11 I1_SR4 SilentIntronRegion 0 1.20 0.00 0.00 1.70 1.82 0.00 0.99 0.00 1.18 1.49 0.00 10.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.90 0.00 11.41 12 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.69 0.00 0.00 13 E2_Ab NovelBoundary 0 0.00 0.00 2.90 0.00 0.00 0.00 2.12 5.71 11.86 3.52 0.00 6.15 0.00 0.00 0.00 0.00 0.00 7.17 4.24 2.94 35.27 18.86 26.12 14 ER2a ExonRegion 0 0.00 5.02 2.45 0.00 0.00 0.00 1.79 5.19 13.30 3.37 0.00 20.12 0.00 0.00 0.00 0.00 0.00 9.02 3.19 4.13 40.96 27.94 33.17 15 ER2b ExonRegion 0 0.36 1.68 2.23 0.88 0.00 4.14 3.89 5.59 10.81 7.47 0.00 20.02 0.00 0.00 0.00 0.00 0.00 10.45 3.49 4.60 47.42 30.60 44.71 16 E2a_E4a KnownJunction 0 9.19 6.05 2.54 5.09 0.00 7.61 1.77 2.42 11.95 5.80 0.00 39.46 0.00 0.00 0.00 0.00 0.00 6.05 4.80 3.26 44.54 55.66 88.78 17 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.03 0.08 0.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E3a_E4a KnownJunction 0 0.00 0.00 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4a ExonRegion 0 1.42 1.47 5.84 3.46 3.97 9.97 5.86 2.81 13.88 4.10 0.00 52.02 0.00 0.00 0.00 0.00 0.00 9.55 5.18 5.15 43.60 50.43 51.09 20 E4a_E5a KnownJunction 0 0.00 2.57 8.10 5.09 0.00 13.46 10.33 0.00 21.99 1.02 0.00 120.34 0.00 0.00 0.00 0.00 0.00 10.45 0.00 14.32 54.49 73.54 60.61 21 ER5a ExonRegion 0 0.38 4.94 4.62 6.74 4.07 3.76 4.76 0.00 12.17 0.45 0.00 85.91 0.00 0.00 0.00 0.00 0.00 9.53 0.00 7.29 30.28 76.68 55.11 22 E5a_E6a KnownJunction 0 3.33 2.63 3.10 3.60 7.72 0.00 1.72 0.00 10.65 1.45 0.00 54.77 0.00 0.00 0.00 0.00 0.00 10.57 3.86 2.88 29.22 86.77 37.56 23 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER6a ExonRegion 0 7.96 1.96 2.74 5.13 9.03 9.67 5.83 0.00 15.07 0.76 0.00 121.60 0.00 0.00 0.00 0.00 0.00 9.68 7.84 5.98 30.27 87.07 50.11 25 E6a_E7a KnownJunction 0 14.08 6.31 3.61 6.16 34.21 22.66 11.08 0.00 16.98 0.00 0.00 149.15 0.00 0.00 0.00 0.00 0.00 9.37 16.75 5.69 19.71 76.54 44.22 26 ER7a ExonRegion 0 5.67 4.52 4.15 6.90 9.02 12.41 11.87 0.04 17.99 2.52 0.00 112.70 0.00 0.00 0.00 0.00 0.00 10.39 7.96 5.73 38.48 85.46 51.17 27 E7a_E8a KnownJunction 0 0.00 6.25 3.93 6.09 8.66 13.97 19.65 0.00 18.34 3.63 0.00 125.59 0.00 0.00 0.00 0.00 0.00 10.32 12.89 3.26 56.09 85.24 28.26 28 ER8a ExonRegion 0 2.89 2.82 5.64 8.61 11.01 6.96 7.17 2.58 15.31 3.34 0.00 122.14 0.00 0.00 0.00 0.00 0.00 13.46 11.51 7.71 41.12 68.32 54.58 29 E8a_E9a KnownJunction 0 0.00 0.00 6.21 15.22 0.00 2.78 4.24 7.06 15.91 5.59 0.00 57.77 0.00 0.00 0.00 0.00 0.00 17.41 12.80 0.00 40.40 91.91 78.79 30 ER9a ExonRegion 0 6.52 2.45 13.98 12.51 2.02 9.44 6.07 6.45 15.82 7.33 0.00 90.57 0.00 0.00 0.00 0.00 0.00 19.33 8.48 7.62 50.03 88.52 92.31 31 E9a_E10a KnownJunction 0 3.78 2.89 7.69 10.32 12.05 7.61 5.56 7.27 12.12 6.21 0.00 148.40 0.00 0.00 0.00 0.00 0.00 11.98 4.80 5.31 66.84 35.27 48.49 32 ER10a ExonRegion 0 6.48 5.95 7.52 9.58 4.07 11.55 6.69 4.23 10.13 7.10 0.00 88.94 0.00 0.76 0.00 0.00 0.00 10.99 6.16 6.71 61.57 69.99 63.72 33 E10a_E11a KnownJunction 0 3.78 8.42 5.32 3.80 4.16 8.06 0.00 2.18 7.93 6.74 0.00 114.49 0.00 0.00 0.00 0.00 0.00 10.82 9.60 6.26 67.09 42.13 76.40 34 ER11a ExonRegion 0 2.19 4.29 6.32 2.63 1.72 8.50 4.38 5.15 12.86 7.30 0.00 63.07 0.00 0.72 0.00 0.00 0.33 19.61 7.72 5.25 73.14 88.23 94.66 35 E11a_E12a KnownJunction 0 8.89 6.05 6.09 3.03 4.33 21.24 0.00 3.70 16.23 2.31 0.00 83.28 0.00 0.00 0.00 0.00 3.74 22.72 0.00 3.20 69.81 67.97 76.74 36 ER12a ExonRegion 0 5.92 0.86 5.62 4.64 3.45 13.30 2.08 4.23 15.55 3.65 0.00 54.16 0.00 0.01 0.00 0.00 0.49 20.49 7.38 6.71 54.69 59.20 67.36 37 E12a_E13a KnownJunction 0 7.56 3.35 4.58 9.56 3.74 7.89 4.11 10.68 13.83 3.63 0.00 30.91 0.00 0.00 0.00 0.00 0.00 26.32 9.13 8.63 62.40 98.40 71.71 38 ER13a ExonRegion 0 4.48 2.61 4.76 9.28 7.22 15.57 4.34 5.62 16.60 2.90 0.00 64.24 0.00 0.00 0.00 0.00 0.00 12.98 6.79 8.56 71.23 96.95 57.94 39 E13a_E14a KnownJunction 0 18.60 2.63 4.08 12.19 3.74 24.08 6.62 7.89 9.35 5.21 0.00 61.82 0.00 0.00 0.00 0.00 0.00 16.33 4.14 8.12 61.28 103.61 68.21 40 ER14a ExonRegion 0 12.65 1.18 7.20 14.39 4.49 17.16 2.44 7.68 17.60 5.32 0.00 80.76 0.00 0.00 0.00 0.00 0.00 16.11 12.43 11.98 64.83 150.79 103.51 41 E14a_E15a KnownJunction 0 2.89 6.31 5.26 15.45 3.48 15.50 2.03 10.39 30.93 6.63 0.00 61.82 0.00 0.00 0.00 0.00 0.00 16.04 8.47 23.01 71.48 85.67 91.17 42 ER15a ExonRegion 0 8.15 4.58 2.99 8.43 6.52 21.31 6.92 5.70 14.51 5.31 0.00 128.44 0.00 0.00 0.00 0.00 0.00 17.59 5.71 15.26 53.32 98.38 81.35 43 E15a_E16a KnownJunction 0 17.34 3.35 2.96 8.12 0.00 12.10 18.90 0.00 15.19 6.53 0.00 86.43 0.00 0.00 0.00 0.00 0.00 11.32 0.00 3.26 40.22 84.62 90.48 44 E16_Aa NovelBoundary 0 0.00 0.00 1.21 8.06 0.00 0.00 0.00 2.55 1.59 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 3.15 5.45 20.32 45 ER16a ExonRegion 0 10.61 7.67 8.73 11.94 9.06 26.34 13.99 5.75 14.60 10.40 0.00 87.85 1.33 0.00 0.00 0.00 0.00 22.22 9.28 12.39 66.48 114.85 102.58 46 E16_Da KnownBoundary 0 0.00 7.70 8.31 20.04 3.57 39.58 7.07 2.55 20.66 7.47 0.00 98.13 0.00 0.00 0.00 0.00 0.00 28.27 14.31 11.19 65.79 167.84 137.09 47 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER16b ExonRegion 0 0.28 3.03 5.83 16.45 1.19 33.01 5.85 3.53 20.50 8.97 0.00 97.75 0.00 0.00 0.00 0.00 0.00 22.87 8.42 11.35 76.49 124.22 85.49 49 E16b_E19a KnownJunction 0 0.00 2.57 5.88 14.55 3.40 32.31 6.40 3.98 18.20 11.58 0.00 51.17 0.00 0.00 0.00 0.00 0.00 24.58 12.14 8.44 82.47 70.05 65.90 50 ER17a ExonRegion 0 0.00 0.68 0.00 0.00 0.00 1.20 0.00 0.00 0.08 0.51 0.00 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.98 1.39 0.00 1.82 0.00 51 E17_Da KnownBoundary 0 0.00 5.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 8.09 0.00 0.00 5.39 0.00 52 ER17b ExonRegion 0 0.10 1.44 0.00 0.97 0.00 1.75 0.63 1.23 1.70 0.44 0.00 2.14 0.00 0.00 0.00 0.00 0.00 0.00 2.32 1.01 0.00 4.63 1.40 53 E17b_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER18a ExonRegion 0 2.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 1.83 1.19 1.68 55 E18a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 3.15 0.00 0.00 56 ER19a ExonRegion 0 15.90 5.90 8.26 11.59 18.96 23.85 11.65 8.51 21.09 9.03 0.00 87.93 1.22 0.42 0.00 0.00 0.00 19.39 10.54 6.57 59.36 102.66 79.74 57 E19a_E20a KnownJunction 0 0.00 0.00 3.78 8.89 13.24 14.14 11.04 10.80 18.37 2.28 0.00 119.44 0.00 0.00 0.00 0.00 0.00 11.48 8.28 9.52 48.00 82.97 53.61 58 ER20a ExonRegion 0 5.69 5.02 6.07 14.08 13.51 30.08 9.69 10.74 19.64 6.33 0.00 110.51 0.00 0.48 0.00 0.00 1.38 17.95 15.72 5.34 47.27 91.76 86.63 59 E20_Da KnownBoundary 0 3.19 0.00 3.13 1.37 0.00 7.50 0.00 4.81 1.79 0.00 0.00 24.16 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 8.22 13.04 17.41 60 E20a_E21a KnownJunction 0 21.26 3.29 0.00 8.76 16.81 10.62 14.75 10.15 24.54 5.53 0.00 82.08 0.00 2.18 0.00 0.00 0.00 12.48 12.61 0.00 84.57 144.94 69.83 61 ER20b ExonRegion 0 1.15 0.00 1.62 2.57 0.00 5.22 0.00 1.90 1.92 0.00 0.00 7.58 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.83 4.38 7.70 17.78 62 E20_Db NovelBoundary 0 0.00 0.00 0.00 3.20 3.82 0.00 4.02 2.55 6.89 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 6.05 11.14 16.30 63 E20b_E21a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 0.00 0.00 4.35 64 I20 Intron 0 2.25 0.90 1.46 2.58 1.90 6.93 2.66 2.74 5.27 0.40 0.00 13.83 0.00 0.00 0.00 0.00 0.00 0.87 1.79 1.70 2.41 17.66 8.06 65 I20_SR1 SilentIntronRegion 0 0.70 0.60 1.03 0.33 0.69 8.82 2.07 2.31 3.16 0.05 0.00 8.54 0.00 0.00 0.00 0.00 0.00 0.00 0.40 1.52 1.57 12.21 3.53 66 I20_SR2 SilentIntronRegion 0 0.00 0.00 0.61 2.23 2.74 6.54 1.26 4.79 8.17 2.29 0.00 19.48 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.77 1.70 19.04 4.87 67 I20_AR2 ActiveIntronRegion 0 3.97 1.67 2.68 3.65 3.19 9.06 3.44 3.69 6.94 0.67 0.00 19.76 0.00 0.00 0.00 0.00 0.00 1.40 1.81 1.21 2.63 24.58 10.85 68 E21_Aa NovelBoundary 0 0.00 0.00 4.14 4.06 4.33 0.00 8.39 0.00 8.13 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 4.42 3.26 16.43 25.90 36.19 69 ER21a ExonRegion 0 11.55 2.81 7.24 16.84 10.08 30.19 9.14 11.68 33.73 2.93 0.00 104.32 0.00 0.05 0.00 0.00 0.00 16.12 20.23 7.53 81.21 128.30 98.81 70 E21a_E22a KnownJunction 0 19.56 5.92 6.89 20.64 21.48 34.47 26.98 13.92 25.72 1.18 0.00 82.68 0.00 0.00 0.00 0.00 0.00 26.49 27.20 12.08 79.51 145.00 113.96 71 ER22a ExonRegion 0 11.69 4.19 8.82 14.83 8.72 30.32 8.28 7.12 23.23 0.93 0.00 63.47 0.00 0.00 0.00 0.00 0.00 15.88 8.98 10.61 64.27 97.55 72.08 72 E22a_E23a KnownJunction 0 17.93 2.83 3.67 14.58 8.66 64.68 6.36 4.93 24.02 0.00 0.00 61.52 0.00 0.00 0.00 0.00 0.00 13.60 0.00 6.01 79.38 87.07 105.25 73 ER23a ExonRegion 0 14.43 0.00 5.47 18.11 9.64 23.78 4.66 2.45 19.75 4.21 0.00 65.78 0.00 0.00 0.00 0.00 0.00 12.52 9.66 12.38 67.77 75.66 77.55 74 E23_Da NovelBoundary 0 0.00 0.00 3.61 3.00 0.00 13.34 3.93 0.00 4.34 2.26 0.00 5.70 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 8.90 5.51 15.54 75 E23a_E24a KnownJunction 0 2.67 0.00 3.90 17.61 7.30 9.99 4.28 2.46 18.84 7.31 0.00 17.41 0.00 0.00 0.00 0.00 0.00 19.57 9.22 22.82 65.30 71.09 65.99 76 I23 Intron 0 2.19 0.27 1.37 3.86 1.28 1.27 1.65 1.19 2.83 0.46 0.00 5.90 0.00 0.00 0.04 0.00 0.13 2.91 1.65 1.06 6.47 10.08 10.99 77 I23_AR1 ActiveIntronRegion 0 2.11 0.65 1.37 3.02 1.79 0.63 1.82 0.44 2.91 0.00 0.00 3.29 0.00 0.00 0.00 0.00 0.28 4.37 0.03 2.02 8.94 7.59 9.81 78 I23_AR2 ActiveIntronRegion 0 2.72 0.18 0.93 6.08 0.88 3.13 2.77 2.50 4.83 0.61 0.00 8.12 0.00 0.00 0.00 0.00 0.00 4.63 4.00 0.68 8.90 17.84 16.17 79 I23_SR3 SilentIntronRegion 0 3.62 0.29 2.66 4.01 2.77 0.26 1.10 1.77 2.80 0.00 0.00 2.93 0.00 0.00 0.00 0.00 0.00 2.31 2.24 1.20 6.56 8.47 12.15 80 E24_Aa NovelBoundary 0 7.33 0.00 0.00 0.00 0.00 0.00 2.25 2.55 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 2.84 9.43 14.68 81 ER24a ExonRegion 0 7.12 6.17 2.99 12.92 6.23 14.09 4.94 5.65 10.72 3.12 0.00 35.28 0.00 0.96 0.00 0.00 0.69 20.44 6.16 7.00 43.43 55.69 61.57 82 E24a_E25a KnownJunction 0 6.96 8.62 1.74 11.69 3.99 24.99 8.35 13.02 13.72 2.95 0.00 24.46 0.00 0.00 0.00 0.00 0.00 22.47 3.86 3.26 51.46 73.48 73.07 83 ER25a ExonRegion 0 8.18 2.88 1.58 8.01 3.16 12.21 2.60 8.13 14.10 2.89 0.00 15.32 0.00 1.47 0.00 0.00 0.00 15.13 5.47 6.27 49.00 57.35 54.79 84 E25a_E26a KnownJunction 0 13.48 0.00 6.33 5.76 4.33 19.70 8.66 8.63 17.91 2.85 0.00 25.21 0.00 0.00 0.00 0.00 0.00 4.77 13.37 0.00 27.92 62.03 80.67 85 ER26a ExonRegion 0 10.64 4.36 4.23 10.05 7.02 19.50 6.41 6.80 14.26 5.19 0.00 45.28 0.00 1.65 0.44 0.00 3.66 6.48 5.36 3.75 30.56 64.82 57.19 86 E26_Da KnownBoundary 0 10.89 0.00 9.82 16.68 29.80 26.75 8.70 14.42 19.59 7.82 0.00 104.58 0.00 2.41 0.00 0.00 3.55 1.62 11.67 2.49 18.10 93.56 55.91 87 ER26b ExonRegion 0 19.27 6.26 13.41 19.02 17.86 27.92 10.58 10.30 16.29 4.69 0.00 55.46 0.14 0.89 0.18 0.00 0.82 5.87 4.47 4.79 15.97 75.59 31.23 88 E26_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 89 ER26c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 90 ER26d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00