Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IL15 Gene 0 20.16 2.19 3.20 3.08 14.75 3.23 7.56 15.39 17.30 20.49 1.37 24.32 27.01 21.99 16.17 28.60 36.73 0.67 2.01 0.67 1.47 17.06 4.68 2 320650 Transcript 0 1.52 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.57 0.00 2.70 3.49 6.93 0.00 7.22 3.97 0.00 0.00 0.00 0.00 1.04 1.47 3 296545 Transcript 0 1.06 0.00 0.00 0.22 6.42 1.90 0.65 1.19 2.14 1.77 0.28 2.01 0.01 7.86 2.83 15.00 16.23 0.60 1.18 0.00 1.68 4.32 6.22 4 394165 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 477265 Transcript 0 16.47 12.54 3.57 1.15 14.66 3.59 6.71 17.18 15.67 30.45 1.72 12.40 15.99 27.67 16.86 37.70 40.83 0.27 3.15 1.51 1.64 4.87 1.11 6 394159 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 IG1_SR1 SilentIntergenicRegion 0 1.13 0.00 0.16 0.00 13.59 0.00 8.67 29.92 21.81 128.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.28 0.00 0.00 0.74 0.00 8 IG1_AR1 ActiveIntergenicRegion 0 1.04 0.00 0.72 0.00 13.64 0.00 11.13 33.65 22.85 107.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 0.00 0.00 0.59 0.00 9 IG1_SR2 SilentIntergenicRegion 0 0.74 0.24 0.93 0.30 9.95 0.05 8.98 25.26 18.93 89.62 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 1.76 0.00 0.00 0.39 0.13 10 IG1_AR2 ActiveIntergenicRegion 0 0.46 0.88 0.40 0.00 6.12 0.20 7.43 17.58 18.86 71.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.69 0.00 0.00 0.55 0.00 11 IG1_SR3 SilentIntergenicRegion 0 0.80 0.62 0.97 0.31 7.07 0.00 6.96 17.72 16.71 55.21 0.00 0.00 0.00 0.00 0.00 0.00 0.25 0.21 2.65 0.00 0.00 0.00 0.44 12 IG1_AR3 ActiveIntergenicRegion 0 1.18 0.00 0.51 0.00 4.15 0.00 9.03 28.06 17.62 57.69 0.00 0.00 0.00 0.00 0.40 0.00 0.00 0.77 1.17 0.00 0.92 0.00 0.82 13 IG1_SR4 SilentIntergenicRegion 0 0.87 0.00 0.43 0.04 3.56 0.07 7.50 14.22 13.14 49.02 0.00 0.00 0.00 0.07 0.00 0.00 0.39 0.13 2.76 0.00 0.00 0.33 0.00 14 IG1_AR5 ActiveIntergenicRegion 0 0.23 0.00 0.60 0.00 0.59 0.00 5.26 11.09 3.45 22.64 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 1.41 0.00 0.00 0.92 0.00 15 IG1_SR6 SilentIntergenicRegion 0 0.77 0.13 1.08 0.13 8.77 0.13 12.63 35.41 12.36 47.78 0.00 0.07 0.00 0.06 0.03 0.00 0.76 0.26 1.66 0.00 0.02 0.80 0.12 16 IG1_AR6 ActiveIntergenicRegion 0 1.15 0.00 0.99 0.00 9.22 0.00 19.00 35.53 14.45 32.88 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 1.59 0.00 0.00 1.13 0.00 17 IG1_SR7 SilentIntergenicRegion 0 1.62 1.89 4.04 1.00 17.65 0.00 38.97 72.02 34.84 97.81 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.80 2.92 0.00 0.12 2.95 0.00 18 IG1_AR7 ActiveIntergenicRegion 0 0.70 0.40 0.91 0.45 6.50 0.04 13.92 23.62 12.09 40.63 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.73 2.61 0.09 0.10 0.87 0.13 19 IG1_SR8 SilentIntergenicRegion 0 1.34 0.80 1.20 0.19 3.38 0.19 12.37 13.53 7.25 21.02 0.00 0.00 0.00 0.04 0.00 0.00 0.78 0.51 1.64 0.00 0.12 1.29 0.00 20 IG1_AR8 ActiveIntergenicRegion 0 0.41 2.72 3.01 0.24 2.54 0.65 19.91 23.09 9.90 29.72 0.00 0.00 0.00 0.00 0.00 0.00 3.89 1.08 4.79 0.00 0.81 1.94 0.00 21 IG1_SR9 SilentIntergenicRegion 0 1.63 3.43 0.00 0.00 2.68 0.34 15.89 37.52 11.06 25.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 2.02 1.74 0.00 22 IG1_AR9 ActiveIntergenicRegion 0 3.23 1.96 0.00 0.00 4.96 1.40 26.17 19.70 6.29 11.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.85 0.00 0.00 8.45 0.00 23 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 1.15 0.00 0.00 0.00 1.62 0.00 2.23 0.00 0.00 0.00 0.00 0.00 2.08 2.94 24 ER1b ExonRegion 0 5.18 0.00 0.00 0.71 0.93 0.00 0.58 0.90 1.04 2.46 0.68 0.00 1.28 13.66 12.20 21.84 14.58 0.00 0.00 0.00 0.48 2.54 3.00 25 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 3.90 0.00 2.08 0.00 1.79 6.69 0.00 0.00 0.00 2.47 6.30 0.00 17.30 0.00 0.00 0.00 3.09 3.12 0.00 26 E1a_E2a KnownJunction 0 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.40 6.98 12.24 0.00 12.22 7.95 0.00 0.00 0.00 0.00 0.00 0.00 27 ER1c ExonRegion 0 3.17 0.00 0.00 0.65 2.55 1.28 1.94 3.58 1.56 1.97 0.83 1.70 0.02 6.68 4.05 16.88 17.28 0.28 0.34 0.00 1.88 5.26 3.48 28 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 16.72 4.43 0.00 0.00 4.86 3.33 0.00 0.00 0.00 16.89 4.45 28.11 31.42 1.53 0.00 0.00 3.15 5.63 15.19 29 ER2a ExonRegion 0 12.61 2.55 0.00 2.55 6.43 4.60 6.71 8.39 10.11 4.73 1.62 11.50 10.38 25.07 15.31 49.72 58.28 1.23 1.33 0.00 3.23 11.87 17.07 30 E2_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.82 3.95 0.00 6.30 0.00 0.00 0.00 20.08 9.07 0.00 0.00 0.00 0.00 0.00 0.00 31 E2a_E4b KnownJunction 0 2.96 0.00 0.00 0.00 4.24 8.69 0.00 2.01 9.32 2.74 0.00 23.11 6.49 16.89 12.24 11.79 22.44 0.00 0.00 0.00 0.00 8.70 0.00 32 I2_AR2 ActiveIntronRegion 0 17.79 1.53 1.07 0.00 15.47 0.00 7.03 6.54 2.08 4.87 0.00 4.87 5.72 0.00 2.72 9.85 13.82 0.00 0.00 0.00 0.00 0.00 2.48 33 I2_AR3 ActiveIntronRegion 0 7.93 0.68 4.38 2.63 5.42 0.00 6.65 3.70 7.03 8.52 0.00 9.83 10.88 0.88 2.91 10.46 13.50 0.00 1.03 0.00 1.11 0.34 1.64 34 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 I3 Intron 0 0.84 0.18 0.19 0.07 1.25 0.29 2.50 2.32 2.59 3.65 0.27 13.63 19.12 7.11 1.14 6.49 10.76 0.00 0.17 0.04 0.99 5.56 0.97 36 I3_AR1 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 8.03 0.00 2.81 2.30 6.07 8.27 0.00 11.36 22.67 12.52 7.98 3.10 27.51 0.00 0.00 0.00 0.00 11.98 0.00 37 I3_AR2 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 8.03 0.00 3.97 1.73 5.56 5.54 0.00 17.32 18.76 17.87 6.29 5.94 19.26 0.00 0.00 0.00 0.00 13.20 0.00 38 I3_AR3 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 1.00 0.00 3.97 1.73 3.09 2.29 0.00 14.34 18.47 17.97 4.35 8.92 25.79 0.00 0.00 0.00 0.00 11.46 0.00 39 I3_AR4 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 1.24 1.15 0.00 12.99 11.94 9.01 0.00 6.48 24.91 0.00 0.00 0.00 0.00 6.82 0.00 40 I3_AR5 ActiveIntronRegion 0 0.00 0.40 0.00 0.40 2.65 1.09 2.89 0.51 2.28 3.12 0.38 24.70 19.71 11.82 0.00 13.02 16.72 0.00 0.00 0.00 3.94 8.33 1.17 41 I3_SR2 SilentIntronRegion 0 1.86 0.24 0.54 0.12 1.57 0.43 3.89 3.93 3.35 4.61 0.45 15.91 29.31 7.84 1.83 6.67 11.27 0.00 0.00 0.12 1.03 9.31 1.03 42 E4_Aa NovelBoundary 0 0.00 6.71 0.00 3.70 3.14 0.00 10.16 14.50 16.78 21.03 0.00 12.45 26.78 29.25 4.45 15.30 21.04 5.93 8.47 0.00 3.03 8.45 4.35 43 ER4a ExonRegion 0 10.10 1.03 2.07 1.68 8.82 1.89 6.59 10.89 13.26 16.73 0.88 14.50 21.10 14.86 5.92 22.45 28.63 0.68 1.55 0.53 1.21 9.91 3.34 44 E4_Ab KnownBoundary 0 51.56 12.76 5.17 5.59 12.22 7.84 4.37 13.18 36.89 21.46 0.00 18.91 27.60 9.71 5.19 31.10 26.55 2.57 0.00 0.00 2.78 11.14 0.00 45 ER4b ExonRegion 0 71.75 6.97 5.63 10.09 29.87 7.49 9.36 31.41 37.85 33.70 3.18 47.66 18.63 63.07 40.22 75.22 106.29 3.98 6.25 1.20 5.87 28.58 12.65 46 E4a_E5a KnownJunction 0 122.24 0.00 1.83 15.78 67.06 7.15 24.42 37.79 58.68 40.75 7.58 46.52 26.13 80.35 72.44 84.42 148.48 3.69 8.56 2.68 7.91 54.80 18.87 47 ER5a ExonRegion 0 76.99 7.28 6.40 14.78 38.33 4.32 17.18 43.00 45.55 36.76 4.06 46.12 33.12 78.22 54.65 78.43 91.82 0.79 3.64 2.95 5.44 47.07 9.41 48 E5_Da NovelBoundary 0 3.78 0.00 1.83 0.00 8.66 0.00 3.40 2.01 3.91 7.44 0.00 6.30 12.99 14.30 4.45 28.28 17.39 0.00 0.00 0.00 0.00 5.69 0.00 49 E5a_E6a KnownJunction 0 25.41 25.46 5.26 0.00 15.70 2.90 6.18 22.51 13.98 40.75 2.53 7.05 6.82 27.72 18.17 58.62 53.20 0.00 4.61 2.68 2.84 0.00 0.00 50 E5a_E7a KnownJunction 0 96.39 2.57 1.66 8.86 32.51 13.40 15.37 16.18 15.97 3.87 0.00 17.11 6.82 41.03 15.58 20.59 32.63 0.00 0.00 0.00 0.00 29.94 7.68 51 I5 Intron 0 1.32 0.21 0.95 0.42 1.11 0.00 3.84 6.14 4.01 6.73 0.00 7.29 19.88 11.37 4.63 14.79 13.00 0.48 0.00 0.00 0.00 2.81 0.00 52 I5_AR1 ActiveIntronRegion 0 1.29 0.00 0.93 0.70 0.00 0.00 3.71 5.06 2.95 7.56 0.00 9.07 21.90 13.01 4.08 12.79 11.44 0.00 0.00 0.00 0.00 2.58 0.00 53 I5_SR1 SilentIntronRegion 0 1.34 0.36 0.96 0.23 1.88 0.00 3.96 6.93 4.77 6.21 0.00 6.11 18.61 10.32 5.05 16.26 14.17 0.81 0.00 0.00 0.00 2.98 0.00 54 E6_Aa NovelBoundary 0 3.78 0.00 0.00 0.00 3.82 0.00 5.30 8.34 4.66 6.21 0.00 5.70 26.30 5.24 8.90 43.92 20.85 2.32 0.00 0.00 0.00 8.57 0.00 55 ER6a ExonRegion 0 13.89 11.13 3.38 1.78 19.47 5.99 7.36 18.14 19.76 33.88 1.74 15.65 20.05 40.42 26.49 32.04 40.66 0.12 3.29 1.33 0.87 4.69 0.00 56 E6_Da NovelBoundary 0 0.00 0.00 0.00 2.06 4.07 0.00 1.81 7.35 4.69 7.63 0.00 7.50 6.82 9.59 0.00 24.52 26.46 0.00 0.00 0.00 0.00 0.00 0.00 57 E6a_E7a KnownJunction 0 23.93 13.68 11.27 3.53 4.07 0.00 6.76 22.30 14.84 38.39 4.79 6.00 0.00 19.78 13.35 19.48 13.93 1.99 9.13 0.00 0.00 3.00 0.00 58 ER6b ExonRegion 0 20.79 8.42 6.52 4.33 12.81 5.89 10.50 24.32 20.60 34.78 3.87 24.28 29.98 32.77 18.86 20.38 25.23 1.85 6.37 0.00 0.00 4.84 0.00 59 I6 Intron 0 4.52 0.72 0.91 0.14 2.66 0.13 3.01 4.40 1.70 4.13 1.10 14.22 14.46 8.50 7.10 8.46 11.27 0.13 0.23 0.00 0.00 1.48 0.00 60 I6_SR1 SilentIntronRegion 0 4.53 0.73 0.91 0.14 2.67 0.13 3.02 4.41 1.71 4.14 1.10 14.26 14.50 8.52 7.12 8.48 11.30 0.13 0.23 0.00 0.00 1.49 0.00 61 E7_Aa NovelBoundary 0 3.26 9.80 4.05 0.00 3.74 0.00 6.05 6.98 0.00 6.21 0.00 37.81 21.91 19.19 10.75 11.11 16.74 0.00 0.00 0.00 0.00 3.06 0.00 62 ER7a ExonRegion 0 95.54 13.42 4.22 14.25 49.11 12.62 19.87 39.77 26.77 42.06 3.00 68.97 64.12 66.68 55.50 68.22 82.33 0.37 6.00 0.00 1.24 62.41 14.93 63 E7_Da NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 1.79 1.10 0.00 7.50 25.65 3.00 0.00 0.00 4.11 0.00 0.00 0.00 0.00 2.57 0.00 64 E7a_E8a KnownJunction 0 95.13 31.57 0.00 11.42 91.85 0.00 23.27 43.00 48.41 43.46 5.05 91.38 180.83 85.00 58.97 77.93 85.09 0.00 4.80 0.00 0.00 67.17 14.85 65 E8_Aa NovelBoundary 0 0.00 0.00 1.15 0.00 4.24 0.00 0.00 2.51 1.24 2.79 0.00 0.00 13.64 0.00 0.00 0.00 13.18 0.00 0.00 0.00 0.00 0.00 0.00 66 ER8a ExonRegion 0 88.61 16.31 9.29 8.33 77.72 5.75 15.59 43.21 39.94 48.02 4.64 102.18 110.37 94.60 71.11 68.36 89.05 0.00 5.45 0.00 0.59 63.85 7.44 67 E8a_E9a KnownJunction 0 138.32 6.71 17.44 4.06 63.07 10.45 5.79 30.76 28.18 41.21 0.00 80.58 55.19 73.22 77.26 61.10 60.68 0.00 0.00 0.00 2.66 79.30 12.12 68 E9_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 2.79 0.00 24.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER9a ExonRegion 0 80.17 6.96 12.44 9.26 55.92 14.83 14.99 43.36 41.27 52.92 4.12 93.43 83.13 68.59 69.50 67.30 96.80 0.00 8.49 0.79 1.44 63.86 12.11 70 E9a_E10a KnownJunction 0 90.68 2.83 19.69 14.68 42.19 14.08 9.94 45.80 49.28 56.22 2.26 74.72 133.60 100.89 103.22 67.42 79.66 0.00 4.05 0.00 0.00 52.42 4.35 71 E10_Aa NovelBoundary 0 3.33 0.00 4.88 0.00 8.57 2.16 1.94 1.60 0.00 1.67 2.00 14.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 72 ER10a ExonRegion 0 61.79 5.77 10.99 9.40 44.98 9.30 14.48 41.33 45.55 48.43 3.42 84.33 74.99 45.82 65.54 47.65 67.39 0.67 3.56 2.02 1.93 56.15 8.73 73 ER10b ExonRegion 0 78.04 4.07 1.86 1.30 18.03 0.00 8.40 4.88 8.65 4.94 0.00 17.69 9.99 16.24 11.98 3.88 13.78 0.00 3.19 0.00 0.00 8.97 5.87 74 ER10c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 2.08 0.00 75 IG2_AR3 ActiveIntergenicRegion 0 26.46 10.19 21.15 24.48 37.91 8.42 9.84 15.34 11.22 20.32 26.31 9.18 10.06 0.78 8.81 5.54 9.74 0.18 0.09 0.59 2.21 30.80 5.80 76 IG2_SR4 SilentIntergenicRegion 0 12.73 5.92 5.48 15.27 27.06 12.63 8.21 8.04 11.94 15.22 43.67 6.67 7.27 0.91 1.52 10.60 15.22 0.27 0.00 0.23 9.70 33.73 14.75 77 IG2_AR5 ActiveIntergenicRegion 0 10.07 4.50 7.61 17.07 20.03 7.49 6.77 7.08 9.47 14.16 35.94 8.49 11.75 0.43 2.32 5.86 17.95 0.12 0.69 0.00 1.99 28.98 6.18 78 IG2_AR6 ActiveIntergenicRegion 0 4.13 1.54 2.41 4.21 11.64 4.11 5.20 3.30 7.36 8.18 28.06 9.41 7.77 1.05 1.01 10.36 14.12 0.37 0.26 0.00 4.48 25.38 4.91