Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF827 Gene 0 27.20 41.61 37.38 50.82 40.08 76.72 53.28 61.48 87.15 93.70 131.69 90.29 86.75 46.20 55.62 90.22 102.05 125.87 72.70 76.00 77.51 107.87 149.47 2 440280 Transcript 1 22.92 32.66 21.30 41.24 92.85 65.36 52.24 26.08 23.36 23.17 14.21 15.91 8.84 5.56 26.96 27.39 16.83 20.07 68.04 20.03 10.13 24.66 60.97 3 379448 Transcript 0 1.06 1.02 1.23 2.91 1.34 4.27 2.65 5.43 5.02 7.25 11.56 7.94 9.38 3.76 11.03 13.27 9.90 7.01 11.58 3.55 10.06 10.90 21.52 4 394076 Transcript 0 2.21 1.11 2.23 1.67 1.09 1.33 1.38 2.10 3.20 2.97 2.72 1.54 1.28 0.96 1.45 2.84 3.60 4.20 1.45 2.90 2.30 2.56 5.21 5 281318 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.18 0.00 0.00 0.00 0.00 0.00 6 432851 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 IG20_AR1 ActiveIntergenicRegion 0 1.64 9.48 9.45 22.60 58.19 52.66 41.47 14.66 13.81 15.49 22.02 6.86 5.86 6.97 24.61 47.70 16.24 19.51 32.99 14.87 18.26 11.33 68.42 8 ER1a ExonRegion 1 22.92 32.66 21.30 41.24 92.85 65.36 52.24 26.08 23.36 23.17 14.21 15.91 8.84 5.56 26.96 27.39 16.83 20.07 68.04 20.03 10.13 24.66 60.97 9 E1_Ab KnownBoundary 0 32.67 17.10 41.63 49.08 30.48 47.19 26.59 39.88 33.28 31.32 56.01 35.11 18.83 4.94 28.56 34.86 32.45 34.16 18.17 46.92 20.94 10.78 60.10 10 ER1b ExonRegion 1 48.14 24.92 41.13 39.95 33.06 41.04 39.07 51.14 51.96 41.20 98.62 40.94 9.22 25.28 61.25 52.71 79.37 66.54 49.30 50.95 29.04 68.43 97.95 11 E1_Da NovelBoundary 0 3.04 11.77 20.16 15.88 7.56 2.38 2.12 10.15 6.89 6.45 2.68 12.60 0.00 0.00 0.00 0.00 11.50 3.86 0.00 7.61 0.00 0.00 3.67 12 E1a_E5b KnownJunction 1 60.83 18.62 50.03 41.85 19.61 19.25 32.77 47.32 64.90 73.15 47.64 18.91 6.82 16.95 43.39 31.44 89.67 80.13 16.57 77.66 36.88 27.92 74.61 13 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 14 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.18 0.00 0.00 0.00 0.00 0.00 15 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER5a ExonRegion 0 4.43 2.22 4.46 3.35 2.19 2.67 2.77 3.93 6.40 5.94 5.45 2.76 2.56 1.92 2.90 5.67 7.20 8.40 2.90 5.80 4.61 5.11 10.41 17 ER5b ExonRegion 0 25.25 58.27 63.39 70.73 35.86 60.10 49.02 72.79 89.25 102.22 112.05 93.77 94.04 42.32 70.33 87.84 109.23 129.00 72.98 92.13 75.07 95.72 134.40 18 E5a_E6a KnownJunction 1 10.67 33.48 15.55 39.42 20.03 46.00 72.78 46.95 62.73 73.25 93.71 43.36 150.64 30.31 62.18 72.46 87.24 80.13 59.48 65.58 43.74 72.75 140.17 19 ER6a ExonRegion 0 20.09 28.63 24.87 37.92 25.21 45.88 45.61 52.90 76.03 83.82 140.40 77.88 85.99 42.25 54.15 80.42 101.49 100.77 71.85 70.10 73.33 86.05 141.26 20 E6a_E7a KnownJunction 0 13.85 18.75 35.87 40.49 34.13 54.80 82.63 36.84 68.20 90.28 142.51 82.53 116.39 40.32 53.77 87.93 99.67 113.54 35.30 103.16 109.65 73.48 127.45 21 ER7a ExonRegion 0 15.37 26.14 25.47 27.78 25.52 53.03 49.83 43.66 64.76 75.71 113.29 66.83 53.57 38.29 51.64 71.22 104.63 105.65 63.93 62.92 68.81 74.95 123.99 22 E7a_E8a KnownJunction 0 21.11 53.08 31.08 31.36 57.89 70.30 66.99 55.86 77.17 99.66 126.40 77.58 73.37 37.97 44.63 53.92 113.42 91.24 30.97 74.59 75.12 61.60 129.41 23 E7a_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 9.94 10.82 0.00 5.01 1.24 16.58 6.30 0.00 0.00 0.00 11.36 3.55 2.49 4.24 3.20 5.37 0.00 11.52 24 ER8a ExonRegion 0 26.82 46.96 37.06 36.13 39.13 78.73 65.08 62.78 91.38 95.68 137.00 90.97 60.85 48.52 45.86 89.84 117.97 123.78 78.27 58.36 79.77 88.85 144.28 25 E8_Da NovelBoundary 0 0.00 5.66 4.41 1.66 0.00 0.00 23.36 4.89 4.80 3.06 7.42 0.00 0.00 4.59 4.45 7.95 0.00 1.99 0.00 3.26 0.00 6.25 0.00 26 E8a_E9a KnownJunction 0 31.41 39.80 45.71 38.59 69.95 147.30 99.94 65.96 80.96 87.19 123.14 111.64 96.26 38.79 48.33 85.70 141.84 123.16 92.24 47.75 89.89 81.87 123.86 27 E9_Aa NovelBoundary 0 14.97 3.09 4.52 7.96 4.24 0.00 7.91 4.11 5.87 7.01 2.63 0.00 0.00 0.00 0.00 0.00 4.58 2.36 0.00 3.26 8.15 2.69 0.00 28 ER9a ExonRegion 0 20.67 55.60 39.24 53.07 45.10 85.13 71.88 88.26 123.11 130.50 184.68 127.67 125.83 59.75 57.41 126.98 142.13 150.07 87.16 77.83 88.36 158.41 205.85 29 E9a_E10a KnownJunction 0 36.45 64.13 35.21 78.25 69.35 97.90 118.84 131.77 156.71 179.28 143.77 176.91 99.83 50.21 42.03 108.09 154.56 137.50 76.52 64.88 80.93 147.21 177.90 30 ER10a ExonRegion 0 66.34 100.42 39.36 72.16 108.32 168.99 169.54 104.15 138.27 159.80 219.02 253.05 223.83 86.36 94.69 156.75 174.26 201.47 99.02 119.08 88.98 210.54 258.93 31 E10_Da NovelBoundary 0 0.00 16.38 8.31 23.01 7.64 12.83 14.26 12.73 8.68 7.47 4.84 0.00 6.66 0.00 4.45 8.37 21.51 4.60 20.14 5.62 3.03 3.00 8.28 32 E10a_E11a KnownJunction 1 56.08 76.63 43.82 63.43 121.14 165.42 103.69 70.40 114.32 133.02 193.21 252.83 107.14 94.71 39.80 185.51 126.98 182.60 108.71 133.65 77.53 242.36 255.06 33 I10_AR1 ActiveIntronRegion 0 4.10 3.51 6.27 6.63 6.22 2.69 18.04 5.33 7.13 4.44 1.84 3.52 2.99 0.00 3.44 3.83 8.42 4.17 5.06 2.56 1.98 1.57 9.12 34 ER11a ExonRegion 0 38.46 60.17 38.78 53.91 61.85 114.88 89.76 71.35 112.03 103.09 161.32 152.95 159.28 54.94 40.12 126.54 103.31 168.98 103.55 88.77 71.39 155.08 235.92 35 E11a_E12a KnownJunction 0 39.34 55.78 28.83 53.41 35.48 122.26 81.57 51.34 106.42 100.09 179.05 150.80 124.99 47.56 17.80 72.12 120.90 139.57 81.04 68.26 99.83 114.69 184.13 36 I11_AR2 ActiveIntronRegion 1 5.74 2.03 4.90 1.36 7.64 11.00 6.62 6.91 3.71 2.29 1.93 25.98 0.00 0.00 7.05 0.00 0.00 3.70 6.37 2.13 2.20 0.00 2.94 37 I11_AR3 ActiveIntronRegion 0 1.13 2.88 2.51 3.10 4.25 4.59 16.24 7.50 5.48 7.53 1.68 9.08 19.24 0.24 1.88 6.35 14.22 4.71 2.15 8.47 0.49 1.24 7.31 38 I11_AR4 ActiveIntronRegion 0 6.54 7.19 5.60 15.33 7.74 3.09 18.54 12.66 7.97 8.02 2.00 11.70 14.63 1.17 9.24 5.26 11.34 5.85 2.94 9.25 1.70 1.50 11.01 39 I11_AR5 ActiveIntronRegion 0 1.23 5.86 4.64 11.52 18.20 6.36 23.81 19.47 7.18 10.78 5.77 15.66 8.83 1.95 9.77 12.48 10.07 10.16 8.28 11.21 1.10 1.11 14.68 40 I11_SR5 SilentIntronRegion 1 8.71 8.52 4.61 12.53 7.74 2.59 19.49 11.39 8.41 5.53 2.39 11.75 10.70 1.30 12.26 10.74 6.09 8.84 4.93 5.74 3.59 0.65 10.78 41 I11_SR6 SilentIntronRegion 0 7.58 6.05 4.04 10.23 10.25 3.51 16.33 5.69 4.57 4.28 1.89 8.87 8.09 0.43 4.91 4.39 7.22 3.03 4.27 3.60 1.42 1.33 6.05 42 I11_AR8 ActiveIntronRegion 0 2.82 4.21 1.81 9.59 6.81 1.25 19.40 3.56 1.99 2.31 0.83 7.02 5.96 0.38 4.36 1.22 6.64 2.49 1.77 3.49 0.38 0.60 6.76 43 ER12a ExonRegion 0 29.63 57.41 18.38 47.50 32.07 89.82 69.64 58.83 98.04 113.84 175.32 155.80 123.81 57.16 51.30 101.22 139.12 149.13 84.27 85.54 97.78 133.47 185.50 44 E12a_E13a KnownJunction 0 36.01 75.05 26.55 83.37 46.43 168.65 106.39 75.45 110.70 91.36 244.38 145.40 146.26 74.52 55.38 111.25 132.12 160.30 108.33 90.19 138.32 119.22 210.42 45 ER13a ExonRegion 0 27.44 43.88 26.85 60.17 43.48 105.16 65.80 66.75 107.56 106.47 200.57 109.50 112.15 62.02 62.48 106.98 121.77 213.62 109.17 93.59 99.15 164.34 211.71 46 E13a_E14a KnownJunction 0 19.93 53.67 47.69 99.02 51.10 128.39 53.70 88.39 157.55 132.81 207.58 104.28 168.01 118.96 66.63 189.95 130.53 211.37 202.08 129.62 105.76 364.34 299.62 47 ER14a ExonRegion 0 33.14 38.25 35.48 68.05 30.97 109.49 61.47 65.17 128.18 134.22 183.31 110.47 109.78 67.45 48.47 102.08 125.14 177.07 98.67 115.00 96.38 168.20 189.18 48 E14a_E15a KnownJunction 0 120.76 61.37 42.28 97.82 74.79 287.22 186.72 77.05 170.37 173.56 228.37 116.14 160.54 121.37 82.33 200.37 174.38 232.43 216.19 174.81 117.62 401.32 411.02 49 ER15a ExonRegion 0 24.33 40.43 34.39 65.94 56.44 126.54 71.47 81.62 124.99 114.64 174.28 158.81 128.39 62.09 58.04 127.74 110.75 178.08 117.69 96.36 109.24 184.74 215.95 50 E15a_E16a KnownJunction 0 17.19 30.19 36.57 77.21 14.77 103.12 66.33 125.48 136.86 110.46 214.48 130.99 140.41 50.03 63.54 141.84 115.38 174.19 107.39 98.56 152.59 206.54 266.25 51 ER16a ExonRegion 0 23.57 34.91 33.26 60.09 36.77 92.23 47.51 93.91 121.40 117.04 182.09 167.54 127.95 48.46 58.76 130.19 125.92 174.45 101.59 100.74 107.77 170.53 245.80 52 E16_Da NovelBoundary 0 13.71 9.08 2.69 6.59 10.70 32.37 29.59 6.86 14.96 11.44 34.64 36.16 12.82 10.24 24.35 18.63 18.05 14.51 0.00 16.43 15.51 24.98 44.64 53 E16a_E18a KnownJunction 0 7.11 0.00 1.83 0.00 0.00 30.72 6.01 6.57 17.04 13.59 31.74 57.17 33.76 16.95 0.00 34.95 28.24 8.42 25.88 2.68 26.13 14.63 32.18 54 E16a_E19a NovelJunction 1 7.56 36.24 18.45 41.32 20.46 74.33 14.88 16.96 47.34 58.72 11.58 65.12 0.00 15.36 9.52 41.27 14.12 38.88 42.07 66.67 7.91 30.07 44.82 55 E16b_E18a KnownJunction 0 0.00 0.00 0.00 1.43 0.00 2.21 0.00 4.52 4.69 4.94 6.37 0.00 0.00 2.30 10.14 11.02 9.16 2.11 12.89 0.00 11.55 11.39 15.62 56 E16b_E19a NovelJunction 0 0.00 3.35 9.46 5.59 8.15 53.61 8.17 17.42 31.08 13.70 12.53 12.60 19.97 2.30 4.45 0.00 17.02 39.13 4.80 18.98 8.15 21.43 23.73 57 ER16b ExonRegion 0 2.12 2.03 2.45 4.39 2.68 6.32 5.30 6.34 5.35 9.56 16.75 15.87 18.76 5.23 11.93 15.52 10.64 11.91 10.26 7.09 8.57 10.42 27.41 58 I16 Intron 0 5.87 4.51 0.00 1.13 2.97 3.05 8.81 0.00 5.10 0.95 19.29 9.32 27.99 12.18 9.56 16.48 14.64 3.57 8.83 4.72 6.11 19.63 19.54 59 I16_AR1 ActiveIntronRegion 0 5.95 4.61 0.00 1.15 3.03 3.12 8.97 0.00 5.19 0.97 19.69 9.52 28.56 12.38 9.77 16.81 14.96 3.65 8.99 4.82 6.22 20.07 19.97 60 ER17a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 I17 Intron 0 6.93 4.56 2.82 9.42 14.03 15.07 17.94 9.84 15.07 13.42 36.51 35.22 31.05 16.21 11.87 27.40 28.42 10.25 12.65 9.81 12.63 36.39 27.51 62 I17_AR1 ActiveIntronRegion 0 7.43 4.45 2.88 10.23 14.84 16.99 19.34 9.44 17.52 15.92 38.37 44.02 40.50 16.64 12.12 31.47 30.91 11.22 12.81 11.26 12.11 40.73 28.70 63 I17_SR1 SilentIntronRegion 1 5.21 2.84 1.79 6.17 9.56 14.87 11.83 6.23 2.23 4.90 34.52 5.09 2.38 15.34 6.49 29.53 18.34 4.90 7.74 6.99 7.07 21.46 22.65 64 I17_AR2 ActiveIntronRegion 1 5.02 6.16 3.98 11.45 6.53 9.12 18.15 11.82 8.18 14.71 40.32 18.35 16.46 15.10 17.23 22.54 33.69 13.47 8.35 7.88 18.20 26.29 29.37 65 I17_AR3 ActiveIntronRegion 1 6.83 4.52 2.49 7.26 15.57 13.02 15.86 10.57 13.99 8.67 31.47 26.42 19.44 15.87 10.24 19.77 22.59 7.72 14.72 7.76 12.71 32.74 25.15 66 E18_Aa NovelBoundary 0 14.08 2.57 0.00 12.79 11.63 16.81 25.84 16.43 10.50 13.81 26.95 18.61 12.82 14.60 10.14 29.31 12.90 6.88 34.73 12.53 13.78 46.41 24.67 67 ER18a ExonRegion 0 14.94 1.73 12.25 8.18 9.08 44.46 4.49 21.21 30.65 38.30 69.64 51.04 32.26 26.97 19.08 56.47 39.91 19.65 58.49 12.51 53.16 42.36 84.01 68 E18_Da NovelBoundary 0 17.04 0.00 1.71 3.53 12.05 7.72 16.16 11.83 7.90 4.32 15.32 38.26 14.45 10.12 18.54 7.86 23.19 11.52 9.22 14.45 11.18 25.47 53.35 69 E18a_E19a KnownJunction 0 33.19 3.35 15.67 12.02 25.13 47.53 4.50 30.48 35.56 45.37 100.34 76.07 52.43 24.55 8.90 71.86 41.80 23.34 69.65 23.84 63.20 51.56 132.91 70 I18 Intron 0 6.36 4.13 2.00 5.71 6.58 12.38 8.37 5.73 7.18 11.54 22.33 13.16 15.10 7.75 10.42 13.11 21.25 10.89 7.83 4.40 11.86 25.69 19.37 71 I18_AR1 ActiveIntronRegion 0 6.37 4.13 2.00 5.71 6.59 12.40 8.38 5.74 7.19 11.56 22.36 13.18 15.13 7.76 10.43 13.13 21.29 10.91 7.85 4.41 11.88 25.73 19.40 72 ER19a ExonRegion 0 36.98 29.28 28.50 43.00 41.91 88.61 40.16 50.62 79.61 86.78 130.33 53.40 75.79 50.59 52.97 89.19 82.15 113.02 46.72 66.13 85.17 100.68 130.86 73 IG19_AR5 ActiveIntergenicRegion 0 63.48 78.32 44.53 75.11 97.19 126.83 83.83 63.48 75.49 89.05 104.01 94.96 59.82 31.80 58.12 58.90 62.46 57.57 46.81 55.81 36.47 138.10 101.85