Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNF175 Gene 0 15.32 46.87 46.95 107.14 38.39 119.54 37.47 28.60 35.85 63.42 0.50 0.35 0.40 1.17 1.75 0.00 0.00 5.93 2.07 24.10 54.50 36.39 42.23 2 347063 Transcript 0 28.89 101.17 79.18 202.04 94.23 250.54 85.01 54.55 69.44 132.89 0.00 0.00 0.00 0.00 5.19 0.00 0.00 11.36 13.84 36.18 119.85 47.09 92.19 3 274068 Transcript 0 3.17 0.00 0.61 2.27 0.00 0.00 0.66 0.00 0.21 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.69 0.00 4 ER1a ExonRegion 0 0.98 6.17 3.57 6.65 1.62 19.60 7.36 1.80 4.25 9.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 4.29 8.87 3.33 7.11 5 E1a_E2a KnownJunction 0 0.00 6.71 5.26 31.80 3.57 6.59 13.07 7.48 11.60 41.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.28 0.00 27.10 37.44 24.31 34.32 6 ER2a ExonRegion 0 0.00 5.83 8.35 25.61 2.68 8.20 8.81 2.27 9.78 25.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 18.70 20.30 15.63 24.42 7 E2a_E3a KnownJunction 0 0.00 6.58 15.02 19.15 0.00 18.57 10.29 2.51 4.95 20.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 11.57 17.30 7.84 28.60 8 E2a_E4a NovelJunction 0 2.96 12.23 12.54 33.53 3.74 20.05 8.48 9.28 5.30 25.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 3.26 18.59 11.27 12.38 9 E2a_E5a NovelJunction 0 0.00 2.96 14.64 0.00 0.00 2.90 1.99 0.00 0.00 5.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 3.24 10 E3_Aa NovelBoundary 0 10.37 21.31 5.88 9.76 0.00 41.51 15.19 5.09 4.08 6.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 0.00 23.78 20.63 2.88 11.18 11 ER3a ExonRegion 0 0.00 13.03 11.19 40.03 2.49 38.47 9.70 8.35 8.85 27.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.94 2.29 22.43 23.12 8.76 14.95 12 E3a_E4a KnownJunction 0 0.00 12.43 13.84 59.70 4.33 46.22 6.58 8.91 14.32 30.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 5.05 5.81 0.00 8.71 13 I3 Intron 0 1.67 11.72 6.43 21.61 7.61 27.23 10.80 5.28 9.03 11.03 0.00 0.05 0.00 0.02 0.05 0.00 0.02 2.59 0.81 13.04 13.31 7.89 16.92 14 I3_AR1 ActiveIntronRegion 0 0.00 3.64 0.82 1.82 2.39 9.84 3.55 1.15 0.82 8.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 10.45 15.75 1.86 3.94 15 I3_SR2 SilentIntronRegion 0 2.96 23.68 25.95 21.28 3.74 41.00 14.18 6.60 7.72 13.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.71 1.48 21.31 18.99 6.31 21.20 16 I3_AR3 ActiveIntronRegion 0 3.15 18.49 15.36 21.84 6.61 18.23 17.12 6.78 10.93 14.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.33 19.14 7.00 5.91 14.51 17 I3_SR3 SilentIntronRegion 0 1.36 10.40 5.56 22.94 7.24 22.20 10.53 4.32 8.23 10.23 0.00 0.09 0.00 0.00 0.09 0.00 0.00 2.22 0.84 12.93 14.29 7.40 18.13 18 I3_AR4 ActiveIntronRegion 0 2.29 13.98 3.37 16.56 10.51 31.50 12.83 7.36 12.94 9.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 12.00 1.28 8.64 4.07 19 I3_SR4 SilentIntronRegion 0 1.92 12.17 5.61 22.78 8.72 40.39 10.08 6.86 10.67 12.80 0.00 0.00 0.00 0.04 0.00 0.00 0.10 3.54 0.70 11.20 15.67 10.25 19.69 20 E4_Aa NovelBoundary 0 0.00 9.27 5.91 49.61 7.05 56.67 18.33 5.79 12.79 9.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.12 4.80 9.78 21.37 20.70 30.99 21 ER4a ExonRegion 0 12.96 54.54 34.49 118.77 36.80 133.75 38.64 29.28 35.01 73.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.20 5.01 30.67 50.44 42.53 38.46 22 E4_Da NovelBoundary 0 0.00 11.84 10.38 26.64 0.00 16.41 8.52 7.27 2.55 13.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 4.42 9.08 20.20 17.82 35.94 23 E4a_E5a KnownJunction 0 34.01 95.11 54.85 186.32 48.56 246.90 90.22 54.92 50.95 90.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.75 3.58 43.14 52.14 62.76 41.23 24 I4 Intron 0 1.20 9.59 5.23 18.61 5.66 9.42 8.49 2.91 6.02 9.56 0.05 0.00 0.00 0.05 0.08 0.00 0.00 3.41 0.25 9.39 16.57 8.29 13.65 25 I4_AR1 ActiveIntronRegion 0 1.64 17.99 3.94 20.00 3.48 5.52 10.81 7.36 3.13 12.32 0.00 0.00 0.00 0.35 0.00 0.00 0.00 1.48 0.00 9.41 10.13 9.92 9.80 26 I4_SR2 SilentIntronRegion 0 1.12 9.44 5.24 18.95 5.73 9.97 8.35 2.69 6.50 9.61 0.06 0.00 0.00 0.02 0.10 0.00 0.00 3.78 0.30 9.55 18.53 8.32 15.03 27 E5_Aa NovelBoundary 0 6.82 26.97 9.79 37.66 10.95 13.86 25.22 9.69 1.48 8.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 8.76 8.83 17.02 7.68 28 ER5a ExonRegion 0 13.86 115.52 88.33 211.15 42.71 238.75 62.75 57.65 65.67 108.23 0.00 0.00 0.00 1.22 0.97 0.00 0.00 5.95 0.35 40.62 66.27 64.69 71.02 29 E5a_E6a KnownJunction 0 20.60 147.61 130.27 245.09 57.81 291.14 107.49 70.85 64.32 137.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 35.28 89.33 54.87 105.51 30 ER6a ExonRegion 0 15.67 119.12 114.18 235.95 91.00 268.90 87.43 65.21 82.11 126.83 0.00 0.00 0.00 0.09 2.28 0.00 0.00 12.23 2.66 54.04 112.04 85.29 85.65 31 E6a_E7a KnownJunction 0 20.74 153.00 133.47 257.91 55.01 259.74 108.42 42.47 64.96 115.53 0.00 0.00 0.00 0.00 4.45 0.00 0.00 16.17 0.00 69.86 130.91 70.36 103.37 32 ER7a ExonRegion 0 17.03 91.45 97.06 207.61 77.96 260.17 75.60 49.14 61.45 107.33 0.00 0.00 0.00 2.42 1.19 0.00 0.00 12.15 5.73 38.25 147.37 60.13 104.80 33 E7_Da NovelBoundary 0 0.00 0.00 0.00 12.15 7.56 18.51 12.76 4.60 3.59 8.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 11.95 16.37 5.51 20.57 34 E7a_E8a KnownJunction 0 18.00 71.04 96.39 176.13 115.70 165.76 53.48 47.69 56.42 120.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 4.24 48.90 103.23 33.62 75.72 35 E7a_E9a NovelJunction 0 12.74 23.15 5.06 13.12 3.23 21.24 14.09 6.98 4.02 14.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.07 26.63 23.21 4.27 36 I7 Intron 0 2.46 5.78 3.51 15.48 9.26 39.96 13.38 3.09 2.54 9.37 0.00 0.00 0.00 0.55 0.38 0.00 0.07 0.94 0.38 3.49 12.16 10.92 14.87 37 I7_AR1 ActiveIntronRegion 0 2.22 5.61 3.52 15.30 8.70 40.59 13.57 3.03 2.60 9.40 0.00 0.00 0.00 0.52 0.31 0.00 0.07 1.00 0.34 3.60 11.08 11.11 14.84 38 I7_SR1 SilentIntronRegion 0 6.28 8.95 3.73 19.89 19.07 33.75 11.57 4.23 1.88 9.51 0.00 0.00 0.00 1.01 1.39 0.00 0.00 0.00 0.91 1.99 30.12 9.21 16.39 39 E8_Aa NovelBoundary 0 3.26 6.51 5.23 24.67 36.76 41.40 19.30 7.23 3.10 17.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 14.06 32.68 20.51 23.82 40 ER8a ExonRegion 0 25.44 84.61 101.57 201.35 91.24 238.54 63.45 48.14 67.53 117.45 0.00 0.00 0.00 1.26 2.93 0.00 0.00 14.11 4.68 40.65 108.74 56.62 80.67 41 E8a_E9a KnownJunction 0 28.89 101.17 79.18 202.04 94.23 250.54 85.01 54.55 69.44 132.89 0.00 0.00 0.00 0.00 5.19 0.00 0.00 11.36 13.84 36.18 119.85 47.09 92.19 42 E8b_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER8b ExonRegion 0 6.35 0.00 1.23 4.54 0.00 0.00 1.32 0.00 0.41 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 44 I8_AR4 ActiveIntronRegion 0 1.35 4.68 6.08 14.02 7.02 6.99 5.31 6.65 3.86 7.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.76 0.00 2.29 17.68 14.90 14.54 45 I8_AR5 ActiveIntronRegion 0 19.81 1.88 4.64 8.67 14.45 8.09 10.62 1.64 4.02 3.88 0.00 1.15 0.00 1.82 1.32 0.00 0.00 0.27 0.00 1.33 3.96 2.89 7.03 46 E9_Aa NovelBoundary 0 20.89 5.85 5.35 18.88 7.30 11.19 10.07 0.00 1.42 17.43 0.00 6.30 7.14 2.18 4.45 0.00 0.00 0.00 0.00 11.57 8.46 6.06 15.79 47 ER9a ExonRegion 0 40.55 38.37 55.35 123.40 54.92 106.91 42.48 38.64 46.35 78.77 2.40 1.66 1.92 3.77 5.78 0.00 0.00 3.04 1.65 21.70 55.61 49.04 42.27 48 IG16 Intergenic 0 11.41 0.77 0.25 1.73 6.63 3.49 3.94 2.55 2.59 2.03 1.42 0.89 0.30 3.77 1.42 0.00 0.85 0.11 0.00 0.67 1.62 3.18 6.23 49 IG16_AR3 ActiveIntergenicRegion 0 35.66 1.22 0.74 3.61 10.50 1.23 6.78 4.88 2.29 3.19 0.00 0.00 0.00 4.68 5.51 0.00 0.99 0.00 0.00 0.00 1.04 2.67 8.07 50 IG16_SR2 SilentIntergenicRegion 0 26.96 0.46 0.50 2.62 11.29 6.33 5.19 4.80 4.15 1.78 2.04 1.31 0.54 3.83 2.28 0.00 1.25 0.00 0.00 0.80 3.06 3.42 6.83