Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MARCH1 Gene 0 53.38 23.47 11.85 41.64 55.75 43.72 35.23 16.61 17.06 13.58 20.31 58.57 41.84 51.72 17.35 20.49 7.51 21.58 12.42 15.77 2.11 6.29 2.48 2 274056 Transcript 0 0.51 10.51 4.27 3.88 0.00 15.58 16.40 0.00 1.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.76 21.09 1.48 0.00 0.00 0.00 3 339875 Transcript 0 67.82 1.39 3.30 0.90 33.81 15.02 9.32 7.57 10.56 1.63 2.03 2.11 0.00 21.25 6.04 28.54 0.00 0.29 0.13 0.00 0.00 0.00 0.00 4 ER1a ExonRegion 0 0.06 8.72 5.93 2.16 0.00 14.27 11.28 0.00 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.08 10.88 4.03 0.00 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 5.79 7.75 4.73 0.00 8.35 28.18 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.04 26.92 0.00 0.00 0.00 0.00 6 ER2a ExonRegion 0 1.99 7.26 3.41 5.08 0.00 18.99 16.28 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.71 27.17 1.88 0.00 0.00 0.00 7 E2a_E3b KnownJunction 0 0.00 20.26 0.00 3.56 0.00 20.73 9.85 0.00 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.22 19.39 0.00 0.00 0.00 0.00 8 E3_Aa NovelBoundary 0 59.12 3.35 0.00 0.00 22.75 7.84 4.11 0.00 1.79 0.00 0.00 0.00 0.00 16.60 0.00 11.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER3a ExonRegion 0 67.82 1.39 3.30 0.90 33.81 15.02 9.32 7.57 10.56 1.63 2.03 2.11 0.00 21.25 6.04 28.54 0.00 0.29 0.13 0.00 0.00 0.00 0.00 10 E3_Ab KnownBoundary 0 22.37 3.35 2.25 0.00 0.00 9.37 3.71 5.91 8.19 2.50 2.68 6.30 0.00 10.12 0.00 7.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3b ExonRegion 1 16.34 8.75 6.72 5.83 0.27 18.38 9.47 8.71 12.71 4.20 0.64 5.04 2.14 35.13 1.32 21.41 0.00 34.92 11.33 1.97 0.00 0.42 0.00 12 E3a_E4a KnownJunction 0 3.19 3.09 5.94 9.42 6.71 38.16 8.57 4.72 15.31 6.61 0.00 6.30 0.00 62.69 8.90 46.91 0.00 63.09 7.91 5.37 0.00 2.88 0.00 13 ER4a ExonRegion 0 18.81 15.13 4.37 8.92 44.56 34.99 22.08 12.77 14.32 5.23 1.09 7.49 1.63 34.92 6.49 19.98 0.93 53.39 19.08 3.29 1.24 0.40 0.00 14 E4a_E5a KnownJunction 0 49.64 24.27 3.93 6.36 34.97 25.61 28.62 21.24 13.25 4.46 0.00 6.30 6.82 44.50 6.30 11.88 0.00 47.26 3.86 0.00 0.00 0.00 0.00 15 I4 Intron 0 17.28 0.68 0.45 1.27 6.12 0.66 4.10 0.76 0.76 0.14 0.31 1.19 0.98 0.79 0.42 1.99 0.11 0.33 0.48 0.16 0.12 0.28 0.22 16 I4_AR1 ActiveIntronRegion 0 25.40 1.28 0.00 0.55 6.38 0.38 4.99 1.62 0.84 0.00 0.00 0.00 0.00 0.28 0.50 0.62 0.69 0.58 0.67 0.00 0.18 0.00 0.00 17 I4_SR1 SilentIntronRegion 0 83.91 1.44 1.09 2.78 25.82 1.14 7.41 2.29 1.79 0.00 0.17 1.19 2.03 0.61 0.32 2.18 0.29 0.04 0.14 0.09 0.08 0.05 0.00 18 I4_AR2 ActiveIntronRegion 0 14.91 0.51 1.99 1.53 11.58 2.91 8.76 0.65 0.77 0.00 0.00 0.73 0.92 0.94 0.52 1.99 0.00 0.00 0.53 0.00 0.00 0.00 0.00 19 I4_SR2 SilentIntronRegion 0 10.81 0.65 0.92 2.68 8.82 1.58 6.81 0.59 0.50 0.31 0.18 1.64 0.21 0.66 0.09 2.03 0.15 0.58 0.44 0.00 0.00 0.00 0.00 20 I4_AR4 ActiveIntronRegion 0 12.55 0.00 0.50 1.27 6.70 0.89 6.67 1.36 0.70 0.65 0.25 0.00 0.00 0.26 0.52 0.63 0.00 0.88 0.00 0.00 0.00 0.00 0.00 21 I4_AR5 ActiveIntronRegion 0 16.40 0.79 1.20 1.36 5.78 3.00 17.30 0.67 0.00 0.00 0.70 0.00 0.00 0.00 1.52 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I4_AR6 ActiveIntronRegion 0 14.36 2.03 0.00 0.88 11.85 0.00 16.08 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 I4_AR7 ActiveIntronRegion 0 23.03 1.11 3.34 0.00 18.97 1.28 10.99 0.00 0.00 2.29 0.94 0.00 0.00 0.00 0.00 2.97 0.00 0.78 0.00 0.00 0.00 0.00 0.00 24 I4_AR8 ActiveIntronRegion 0 31.67 0.00 3.68 0.00 11.42 3.67 8.20 0.00 0.00 2.29 1.93 0.00 0.00 0.00 0.00 1.60 0.00 2.70 0.00 0.00 0.00 0.00 0.00 25 I4_AR9 ActiveIntronRegion 0 30.30 0.00 3.01 0.00 3.65 1.92 4.57 0.00 0.00 0.52 0.62 0.00 0.00 0.00 0.92 2.70 0.00 3.70 0.00 0.00 0.00 0.00 0.00 26 I4_AR10 ActiveIntronRegion 0 21.40 0.00 0.00 0.00 0.00 0.00 3.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.97 0.00 3.70 0.00 0.00 0.00 0.00 0.00 27 I4_AR18 ActiveIntronRegion 0 13.61 0.00 0.00 0.00 2.29 0.00 6.05 0.00 0.00 0.00 0.00 0.00 1.34 0.00 0.00 5.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I4_AR19 ActiveIntronRegion 0 66.99 3.28 1.39 3.45 17.48 0.31 8.99 1.31 2.03 0.29 0.33 1.21 0.33 0.34 0.59 2.27 0.00 1.01 0.81 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 69.12 20.34 4.20 12.53 27.66 30.46 25.57 14.66 11.65 7.63 3.57 14.69 8.65 47.60 7.53 21.25 2.27 39.10 21.22 0.79 3.04 1.17 0.00 30 E5a_E6a KnownJunction 1 91.50 22.76 2.87 7.29 35.82 47.70 18.77 15.24 4.92 2.87 5.37 23.86 0.00 49.80 0.00 29.91 0.00 23.55 12.80 0.00 0.00 3.12 0.00 31 I5_AR2 ActiveIntronRegion 0 17.40 0.00 0.27 2.73 2.68 0.00 2.65 0.00 2.47 0.00 3.01 4.33 2.08 0.00 0.00 5.94 0.00 1.85 0.00 0.00 0.00 0.00 0.00 32 I5_AR5 ActiveIntronRegion 0 23.76 20.36 12.57 63.25 16.66 11.20 12.03 9.13 6.00 12.89 22.02 36.88 24.33 21.51 33.97 10.40 9.85 1.95 3.42 13.51 2.54 8.53 2.64 33 I5_AR6 ActiveIntronRegion 1 33.53 23.23 9.16 60.04 25.07 22.49 23.00 3.73 6.11 16.12 28.99 61.52 22.46 43.17 34.66 17.36 0.00 0.00 0.00 10.64 2.55 10.64 5.87 34 I5_AR7 ActiveIntronRegion 0 34.18 19.99 13.17 82.44 18.22 11.94 28.11 7.76 8.59 13.20 24.26 55.82 32.63 49.24 35.37 11.64 8.08 1.22 0.00 13.67 6.33 13.52 3.25 35 I5_AR8 ActiveIntronRegion 1 51.56 6.89 10.65 58.41 19.77 11.92 25.60 7.49 5.39 5.26 24.00 64.70 23.06 50.30 39.57 17.34 11.28 2.77 0.00 20.33 3.80 11.81 2.61 36 I5_SR4 SilentIntronRegion 0 20.62 18.55 9.56 50.03 20.90 16.51 21.44 5.12 4.29 10.12 20.33 39.67 22.50 25.77 22.75 11.03 9.24 5.01 6.51 21.30 1.98 4.22 1.69 37 E6_Aa NovelBoundary 0 34.45 25.26 4.49 26.84 8.23 5.00 12.76 1.77 1.19 8.06 27.64 18.91 13.31 13.89 0.00 4.10 0.00 8.29 0.00 14.51 2.41 0.00 3.76 38 ER6a ExonRegion 0 60.52 27.80 14.48 54.32 67.39 50.80 41.83 19.43 19.67 17.12 27.12 77.56 56.05 60.63 21.99 21.67 9.96 16.32 11.63 20.73 2.53 8.42 3.37 39 IG31 Intergenic 0 64.19 21.12 10.91 29.04 55.82 39.49 34.38 12.28 11.30 10.72 40.96 98.63 86.15 57.55 18.44 17.30 18.13 7.89 9.60 22.79 2.47 14.41 3.90 40 IG31_AR3 ActiveIntergenicRegion 0 83.92 26.30 13.87 35.41 70.93 50.86 42.24 15.72 13.97 12.76 44.11 109.58 98.56 64.54 21.89 19.16 18.13 8.58 11.66 24.77 2.44 15.83 4.41 41 IG31_SR1 SilentIntergenicRegion 0 1.63 6.25 0.97 5.39 4.48 4.46 5.81 0.42 0.96 3.79 24.86 21.06 22.85 25.84 7.96 6.44 14.69 4.99 1.44 10.55 3.07 6.01 1.74 42 IG31_AR2 ActiveIntergenicRegion 0 2.12 1.45 0.00 5.84 2.68 11.00 14.56 0.00 3.71 3.44 35.07 74.22 18.76 29.47 8.70 7.22 13.20 5.54 4.55 17.93 4.41 11.91 0.00 43 IG31_AR1 ActiveIntergenicRegion 0 3.78 4.34 2.20 11.78 11.83 3.93 12.54 2.39 4.24 4.81 35.16 92.00 63.84 42.33 7.64 14.88 20.47 6.26 4.30 20.54 2.28 12.54 2.72