Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRDM5 Gene 0 5.56 18.19 6.96 14.99 4.03 8.48 13.86 2.15 4.59 2.95 0.11 18.55 0.00 17.13 0.00 7.04 0.00 4.93 3.32 11.09 11.40 25.67 16.33 2 264808 Transcript 0 3.02 10.66 6.86 9.31 2.32 4.89 10.69 0.48 2.11 1.24 0.03 5.00 0.00 4.95 0.00 2.12 0.00 7.10 6.09 7.85 12.82 19.81 13.78 3 394435 Transcript 0 0.00 0.00 1.83 1.04 0.00 0.00 6.44 0.00 1.33 0.00 0.00 4.83 0.00 4.40 0.00 0.00 0.00 1.02 0.00 1.37 11.71 1.16 14.07 4 428209 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 5.85 0.00 17.72 0.00 8.37 0.00 0.00 0.00 2.62 0.00 2.82 0.00 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 ER1b ExonRegion 0 0.32 1.69 2.21 0.75 0.24 1.97 4.36 0.01 0.28 0.95 0.00 0.00 0.00 3.55 0.00 2.78 0.00 2.77 1.28 3.90 6.06 4.02 5.93 7 E1a_E2a KnownJunction 0 0.00 3.35 12.33 4.13 4.33 5.05 19.56 0.00 4.75 3.68 0.00 0.00 0.00 4.41 0.00 3.93 0.00 13.31 4.42 5.82 39.91 10.29 30.39 8 ER2a ExonRegion 0 1.03 7.48 7.12 4.07 2.26 4.21 12.96 1.52 2.22 3.55 0.00 14.64 0.00 21.38 0.00 14.08 0.00 17.64 5.42 28.19 37.52 24.98 29.12 9 E2a_E3a KnownJunction 0 3.04 5.26 4.94 7.33 0.00 0.00 10.33 0.00 0.00 4.22 0.00 6.15 0.00 43.68 0.00 18.63 0.00 19.65 4.80 37.71 33.55 21.55 53.44 10 ER3a ExonRegion 0 1.05 5.06 7.01 6.66 2.22 9.03 7.42 3.37 2.69 4.85 0.00 16.58 0.00 27.77 0.00 19.45 0.00 12.95 4.87 17.30 37.75 21.34 35.88 11 E3a_E4a KnownJunction 0 0.00 0.00 3.67 1.47 0.00 0.00 8.88 0.00 1.71 0.00 0.00 6.30 0.00 6.36 0.00 0.00 0.00 2.03 0.00 2.68 17.05 2.33 19.97 12 E3a_E5a KnownJunction 0 0.00 3.22 6.53 1.40 0.00 8.52 5.92 5.09 0.00 0.00 0.00 23.41 0.00 7.59 0.00 3.25 0.00 2.53 0.00 18.60 25.51 9.19 23.73 13 ER4a ExonRegion 0 0.00 0.00 0.00 0.61 0.00 0.00 4.01 0.00 0.96 0.00 0.00 3.37 0.00 2.44 0.00 0.00 0.00 0.00 0.00 0.06 6.37 0.00 8.16 14 E4_Da NovelBoundary 0 0.00 0.00 1.39 1.70 0.00 5.56 3.62 0.00 1.56 1.07 0.00 12.90 0.00 20.07 0.00 7.43 0.00 8.29 0.00 9.20 14.52 7.41 3.76 15 I4_AR1 ActiveIntronRegion 0 1.23 1.51 1.45 2.48 0.14 3.01 5.69 0.27 1.37 0.36 0.20 16.36 0.00 5.44 0.00 3.78 0.00 0.88 0.51 4.40 1.99 11.60 4.98 16 I4_SR1 SilentIntronRegion 0 2.12 0.73 0.00 1.36 0.00 0.00 2.65 0.00 0.00 0.00 0.00 22.88 0.00 0.12 0.00 0.00 0.00 1.72 0.00 2.13 2.60 10.05 2.94 17 I4_AR2 ActiveIntronRegion 0 1.93 2.32 1.98 3.94 0.73 0.75 4.84 1.57 1.87 0.46 0.00 25.37 0.00 5.54 0.00 2.42 0.00 1.00 1.08 4.39 4.53 14.89 6.26 18 ER5a ExonRegion 0 2.46 3.15 6.15 7.06 2.26 6.00 9.80 4.91 4.50 2.88 0.00 24.34 0.00 21.25 0.00 17.82 0.00 8.46 8.70 17.18 30.46 30.49 30.47 19 E5a_E6a KnownJunction 0 0.00 5.53 4.32 9.09 0.00 4.77 10.07 3.49 7.23 1.45 0.00 25.21 0.00 15.60 0.00 19.65 0.00 4.68 13.08 14.19 32.06 27.37 42.17 20 ER6a ExonRegion 0 1.25 9.85 6.46 10.25 3.27 8.92 9.07 3.23 7.84 2.08 0.00 23.70 0.00 14.06 0.00 9.95 0.00 13.96 7.57 17.13 33.02 28.74 31.62 21 E6_Da NovelBoundary 0 0.00 0.00 5.94 1.23 0.00 0.00 1.81 2.55 3.10 1.13 0.00 18.91 0.00 7.71 0.00 3.50 0.00 0.00 4.24 9.01 7.66 6.00 8.45 22 E6a_E7a KnownJunction 0 0.00 14.34 11.15 9.36 0.00 2.16 17.44 0.00 1.19 0.00 0.00 0.00 0.00 2.24 0.00 0.00 0.00 14.51 22.02 11.57 22.36 29.21 23.56 23 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 0.00 0.00 5.85 0.00 17.72 0.00 8.37 0.00 0.00 0.00 2.62 0.00 2.82 0.00 24 I6 Intron 0 0.43 1.84 1.50 1.42 0.55 0.45 2.07 0.32 1.21 0.56 0.00 14.05 0.00 2.32 0.00 2.20 0.00 0.49 0.39 2.80 0.36 5.91 2.53 25 I6_SR1 SilentIntronRegion 0 0.49 1.83 1.26 1.55 0.62 0.39 2.18 0.34 1.36 0.63 0.00 14.64 0.00 2.29 0.00 2.20 0.00 0.55 0.44 2.86 0.21 6.21 2.71 26 E7_Aa NovelBoundary 0 0.00 3.35 0.00 4.53 0.00 0.00 0.00 6.53 1.27 0.00 0.00 49.52 0.00 7.00 0.00 3.85 0.00 0.00 8.09 5.50 6.12 5.39 0.00 27 ER7a ExonRegion 0 0.66 11.55 9.59 7.61 2.13 6.72 13.08 0.07 2.62 1.18 0.00 3.91 0.00 8.30 0.00 6.52 0.00 10.69 5.69 10.34 22.80 22.94 17.02 28 E7_Da NovelBoundary 0 0.00 2.76 5.17 5.56 0.00 5.00 16.03 0.00 0.00 0.00 0.00 38.41 0.00 2.47 0.00 4.27 0.00 6.67 0.00 3.07 2.97 5.63 33.04 29 E7a_E8a KnownJunction 0 6.52 2.76 4.82 8.19 4.33 5.68 6.18 0.00 1.79 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 0.00 8.76 14.27 19.59 18.27 30 I7 Intron 0 1.68 2.42 6.16 3.63 0.53 2.55 5.52 0.51 1.10 0.34 0.00 11.37 0.00 5.61 0.00 4.13 0.00 6.38 1.90 4.64 6.12 9.51 8.74 31 I7_AR1 ActiveIntronRegion 0 1.69 2.44 6.21 3.66 0.54 2.57 5.56 0.52 1.10 0.34 0.00 11.46 0.00 5.66 0.00 4.16 0.00 6.43 1.91 4.68 6.17 9.58 8.81 32 E8_Aa NovelBoundary 0 6.45 6.71 8.43 9.09 0.00 8.12 18.24 1.73 6.13 0.00 0.00 11.70 0.00 19.01 0.00 4.36 0.00 4.19 0.00 11.31 0.00 8.27 16.82 33 ER8a ExonRegion 0 2.15 8.88 7.59 7.03 2.96 6.13 6.79 2.45 4.89 1.51 0.00 5.04 0.00 23.67 0.00 11.50 0.00 9.59 6.71 13.69 25.18 25.45 26.33 34 E8_Da NovelBoundary 0 0.00 8.95 1.15 4.13 0.00 0.00 0.00 0.00 1.48 0.00 0.00 12.15 0.00 7.18 0.00 8.29 0.00 9.66 4.33 3.00 7.85 2.45 16.13 35 E8a_E9a KnownJunction 0 0.00 5.53 2.72 12.65 4.16 10.62 5.52 3.57 5.90 1.53 0.00 12.45 0.00 17.01 0.00 8.37 0.00 1.58 0.00 5.94 6.30 37.29 6.83 36 I8_AR1 ActiveIntronRegion 0 1.59 3.83 4.31 2.37 0.00 0.34 2.50 0.03 1.33 0.64 0.00 13.26 0.00 5.64 0.00 2.49 0.00 1.55 1.80 5.15 3.73 7.39 2.48 37 I8_SR2 SilentIntronRegion 0 1.58 4.02 3.12 2.32 0.48 0.74 3.48 0.59 1.17 0.16 0.09 14.59 0.00 4.89 0.00 4.56 0.00 2.48 1.39 3.01 3.86 3.29 4.00 38 I8_AR3 ActiveIntronRegion 0 1.50 2.85 5.37 3.65 0.00 0.31 5.05 0.00 0.43 1.26 0.00 8.13 0.00 3.26 0.00 3.37 0.00 0.70 0.94 6.04 0.39 7.63 4.24 39 ER9a ExonRegion 0 2.65 4.37 6.69 12.85 4.78 9.03 12.76 3.61 6.78 1.19 0.00 18.51 0.00 25.26 0.00 6.20 0.00 5.34 4.22 19.57 5.29 25.24 26.98 40 E9a_E10a KnownJunction 0 0.00 6.45 15.55 16.05 0.00 5.05 18.11 2.55 10.45 1.67 0.00 27.31 0.00 25.02 0.00 19.31 0.00 11.23 9.32 26.85 2.84 14.45 40.46 41 ER10a ExonRegion 0 8.47 6.41 7.44 8.53 3.21 7.75 12.62 2.44 9.07 1.12 0.00 22.97 0.00 30.88 0.00 12.62 0.00 6.61 4.80 20.28 8.22 26.47 26.88 42 E10a_E11a KnownJunction 0 11.04 5.33 4.14 5.36 0.00 11.47 8.70 1.60 8.51 2.66 0.00 12.30 0.00 22.78 0.00 4.36 0.00 2.11 4.80 16.04 18.66 27.92 46.27 43 ER11a ExonRegion 0 2.63 8.56 4.62 9.54 6.98 6.93 14.06 0.92 4.50 1.08 0.00 30.25 0.00 21.34 0.00 12.98 0.00 3.89 1.45 15.04 17.67 30.62 27.41 44 E11a_E12a KnownJunction 0 6.37 10.59 6.30 9.72 0.00 7.84 14.22 1.93 2.89 1.67 0.00 26.86 0.00 18.36 0.00 7.43 0.00 0.00 0.00 17.19 15.01 19.53 22.45 45 ER12a ExonRegion 0 5.40 12.40 5.98 13.69 4.07 12.41 13.30 3.68 3.64 1.40 0.00 26.16 0.00 33.16 0.00 8.22 0.00 4.97 9.18 22.36 17.35 29.15 28.71 46 E12a_E13a KnownJunction 0 2.96 17.76 5.80 14.52 3.14 27.03 14.09 1.97 3.70 0.00 0.00 75.17 0.00 12.30 0.00 20.76 0.00 0.00 4.42 9.01 11.37 22.11 24.93 47 ER13a ExonRegion 0 5.25 8.17 5.88 11.63 3.37 7.68 14.60 3.18 5.28 2.95 0.00 26.30 0.00 28.83 0.00 14.18 0.00 6.35 2.61 17.54 11.39 22.34 31.87 48 E13a_E14a KnownJunction 0 0.00 12.30 4.76 9.82 3.23 18.11 48.71 4.19 2.75 2.58 0.00 6.75 0.00 39.26 0.00 7.35 0.00 9.24 0.00 11.95 14.95 22.66 10.41 49 ER14a ExonRegion 0 6.17 11.94 7.69 6.73 2.45 10.28 14.39 2.72 6.74 2.62 0.00 20.86 0.00 28.53 0.00 10.53 0.00 10.60 1.29 17.20 14.21 27.66 20.68 50 E14a_E15a KnownJunction 0 3.56 19.21 7.63 7.62 4.33 0.00 8.13 2.26 5.01 3.14 0.00 6.30 0.00 18.19 0.00 21.02 0.00 12.02 4.61 8.50 6.05 13.47 35.68 51 ER15a ExonRegion 0 6.89 11.02 6.73 8.02 4.79 9.36 7.33 1.05 4.98 1.48 0.00 15.66 0.00 33.45 0.00 16.73 0.00 16.31 2.56 17.54 19.99 32.66 40.09 52 E15a_E16a KnownJunction 0 7.48 0.00 3.73 10.59 4.33 2.90 15.72 2.42 7.38 1.37 0.00 6.30 0.00 33.37 0.00 19.05 0.00 14.34 0.00 14.89 22.92 26.70 18.35 53 ER16a ExonRegion 0 3.57 9.51 2.16 9.62 1.86 1.24 15.09 0.79 6.09 3.15 0.94 11.38 0.00 27.04 0.00 16.05 0.00 8.52 1.18 13.01 30.14 21.41 25.00 54 E16a_E17a KnownJunction 0 3.56 9.93 0.00 4.49 0.00 0.00 9.41 0.00 5.35 7.33 0.00 6.30 0.00 34.55 0.00 18.20 0.00 6.80 8.28 13.81 31.69 39.07 19.80 55 ER17a ExonRegion 0 3.38 26.62 2.37 9.39 2.77 8.91 12.47 1.31 3.89 2.69 0.20 14.65 0.00 22.01 0.00 8.00 0.00 3.75 3.27 11.10 15.88 30.55 19.28 56 E17_Da KnownBoundary 0 0.00 39.40 3.49 4.96 0.00 8.29 9.85 0.00 0.00 0.00 0.00 36.76 0.00 7.00 0.00 3.76 0.00 0.00 3.67 6.39 7.85 25.60 12.89 57 ER17b ExonRegion 0 7.93 24.65 8.77 21.40 5.15 9.88 16.75 2.34 4.96 3.66 0.14 21.09 0.00 14.21 0.00 4.09 0.00 2.85 2.74 8.59 4.68 27.29 10.06