Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM2 Gene 0 24.71 265.54 59.61 127.28 157.71 629.85 152.76 162.78 325.74 189.08 0.77 8.23 4.54 5.58 2.34 5.12 20.68 251.63 66.02 267.36 77.13 144.31 105.46 2 491446 Transcript 0 0.14 1.48 0.90 0.48 2.39 11.18 3.31 2.08 1.26 4.73 0.00 1.11 0.00 0.09 0.21 0.00 0.24 5.35 1.18 6.11 0.16 0.00 0.00 3 441616 Transcript 0 0.00 0.00 0.00 0.00 4.33 15.22 3.89 4.19 10.19 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.81 0.00 17.07 0.00 0.00 0.00 4 437508 Transcript 0 0.00 4.20 0.74 1.02 2.23 4.89 2.43 1.15 10.58 5.75 0.97 0.51 0.00 0.00 0.00 0.50 1.10 40.98 1.06 10.32 0.37 0.35 2.02 5 496978 Transcript 0 1.14 6.79 1.31 2.30 5.59 13.47 7.35 4.47 8.68 3.47 0.00 0.21 0.00 1.04 0.37 0.89 5.12 30.61 4.95 13.72 20.13 9.59 23.32 6 479711 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 2.78 2.69 0.00 0.00 0.00 0.00 0.00 4.36 0.00 13.10 3.86 18.60 2.90 2.76 4.35 7 494872 Transcript 0 15.56 5.72 0.92 0.85 4.84 5.16 7.68 2.38 3.87 2.23 3.65 5.72 5.92 4.19 6.17 6.37 5.14 3.98 4.28 9.03 5.09 3.77 6.91 8 440171 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 338700 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 482578 Transcript 0 2.38 18.81 14.64 18.08 6.80 27.97 21.13 18.64 34.56 14.43 0.00 0.00 0.00 1.21 0.61 3.87 4.74 55.02 58.49 91.86 6.40 0.51 5.24 11 433687 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.64 7.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.22 9.60 8.69 0.00 0.00 0.00 12 460908 Transcript 0 3.61 20.93 9.42 13.81 13.83 15.96 24.81 10.15 16.94 11.43 0.58 1.60 2.35 1.34 1.49 0.00 2.62 13.58 4.72 28.15 5.36 6.55 9.57 13 ER1a ExonRegion 0 0.71 6.68 0.00 0.21 6.74 50.38 5.97 0.49 3.37 10.74 0.00 3.70 0.00 0.45 0.00 0.00 0.00 3.71 4.28 10.27 0.00 0.00 0.00 14 E1_Ab KnownBoundary 0 0.00 9.54 0.00 1.76 4.33 97.22 6.71 4.19 17.07 61.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.13 0.00 39.44 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 8.03 1.57 2.70 5.67 64.31 7.99 7.35 26.36 47.26 0.00 1.71 0.00 0.00 0.00 0.00 0.00 29.81 9.56 47.95 0.00 0.00 0.00 16 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E1a_E8a NovelJunction 0 0.00 2.70 1.66 2.06 0.00 53.61 4.50 12.28 27.89 26.97 0.00 0.00 0.00 2.41 0.00 0.00 0.00 78.89 0.00 53.37 0.00 0.00 0.00 18 E1a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 4.33 15.22 3.89 4.19 10.19 6.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.81 0.00 17.07 0.00 0.00 0.00 19 ER2a ExonRegion 0 0.00 5.04 0.12 2.04 4.46 9.78 4.86 0.00 9.04 4.98 1.93 1.02 0.00 0.00 0.00 0.99 2.20 35.36 2.12 11.06 0.73 0.69 4.03 20 E2a_E8b KnownJunction 0 0.00 3.35 1.36 0.00 0.00 0.00 0.00 2.30 12.12 6.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.59 0.00 9.59 0.00 0.00 0.00 21 ER3a ExonRegion 0 0.00 0.00 1.86 0.00 1.38 0.94 6.82 5.38 0.95 4.44 0.00 1.84 0.00 0.00 1.05 0.00 0.00 5.66 1.64 6.68 0.00 0.00 0.00 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 0.00 0.73 2.62 2.17 3.82 4.58 3.78 4.54 1.97 8.49 0.00 0.00 0.00 0.00 0.00 0.00 1.18 17.38 0.00 13.58 0.79 0.00 0.00 24 ER5a ExonRegion 0 0.50 5.42 0.23 0.00 1.53 3.41 4.73 6.26 1.06 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 2.38 0.00 2.03 0.21 0.00 2.80 25 ER5b ExonRegion 0 2.18 7.72 2.01 0.88 2.56 3.22 4.08 6.95 4.63 1.88 0.00 0.00 0.00 0.45 0.00 1.61 0.21 7.10 0.24 5.36 4.81 2.26 5.84 26 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E5a_E8a KnownJunction 0 0.00 0.00 0.00 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 28 ER6a ExonRegion 0 2.28 13.58 2.62 4.61 11.19 26.94 14.69 8.93 17.37 6.95 0.00 0.43 0.00 2.08 0.73 1.77 10.24 61.21 9.89 27.45 40.26 19.17 46.65 29 E6_Da NovelBoundary 0 0.00 7.96 15.94 20.71 8.23 28.85 6.27 24.40 50.40 20.76 0.00 0.00 0.00 5.36 0.00 0.00 25.06 75.82 33.88 75.49 209.30 27.98 42.34 30 I6_AR1 ActiveIntronRegion 0 0.97 9.55 2.73 6.40 7.07 35.39 13.68 7.10 18.17 14.46 0.00 0.82 0.00 2.33 0.51 1.37 4.82 95.99 9.86 35.88 68.32 32.79 72.52 31 E7_Aa NovelBoundary 0 3.78 6.71 0.00 1.60 4.33 44.07 15.77 0.00 3.18 2.90 0.00 0.00 0.00 0.00 0.00 0.00 13.18 14.01 31.81 28.12 0.00 0.00 0.00 32 E7_Ab NovelBoundary 0 15.56 208.25 16.71 15.15 38.29 369.79 140.17 12.98 52.37 25.76 0.00 0.00 0.00 0.00 0.00 7.78 13.74 81.95 129.32 233.68 2.35 0.00 3.93 33 ER7a ExonRegion 0 7.14 41.69 6.28 9.03 17.39 62.12 36.24 11.88 19.45 5.73 0.00 0.00 0.00 1.02 0.00 2.23 4.95 38.11 52.16 77.39 3.03 0.00 0.00 34 ER7b ExonRegion 0 3.55 36.24 16.28 19.34 8.30 74.96 33.25 21.01 63.08 22.47 0.00 0.00 0.00 0.73 0.00 1.90 11.76 76.29 67.01 155.98 6.32 1.11 2.22 35 E7a_E8a KnownJunction 0 0.00 0.00 20.90 30.93 0.00 13.12 9.54 21.73 67.77 21.68 0.00 0.00 0.00 2.12 0.00 8.29 0.00 106.49 117.74 177.95 2.59 0.00 3.59 36 E7a_E8b NovelJunction 0 0.00 2.96 9.11 12.05 0.00 0.00 0.00 4.68 7.75 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.63 30.78 40.20 3.15 0.00 0.00 37 E7a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.50 0.00 1.64 7.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.22 9.60 8.69 0.00 0.00 0.00 38 ER8a ExonRegion 0 1.59 2.54 31.25 39.86 0.67 21.55 11.92 24.63 81.52 34.98 0.00 0.00 0.00 4.06 0.00 4.46 6.60 155.21 120.25 200.53 18.18 4.17 19.82 39 ER8b ExonRegion 0 4.37 75.60 53.38 50.03 41.29 353.85 85.20 51.68 195.41 99.58 0.54 2.54 0.00 6.99 1.97 11.17 30.27 509.94 87.62 304.47 137.62 65.51 115.02 40 E8a_E9a KnownJunction 0 28.38 303.10 66.23 59.60 42.53 469.79 73.09 86.99 261.98 123.67 0.00 6.30 0.00 0.00 0.00 8.72 36.75 711.17 123.67 410.48 205.90 88.54 162.10 41 ER9a ExonRegion 0 5.72 100.20 44.73 49.71 39.20 308.32 72.27 88.76 226.40 123.27 0.00 2.66 2.64 5.76 1.32 7.59 25.23 621.43 80.65 349.14 175.07 84.21 146.94 42 E9_Da KnownBoundary 0 3.48 40.65 18.86 21.18 12.56 11.30 12.72 32.94 24.07 10.96 0.00 0.00 0.00 0.00 0.00 0.00 4.77 24.58 9.04 15.02 25.82 0.00 16.65 43 E9a_E10a KnownJunction 0 0.00 28.55 11.95 32.56 19.78 244.97 50.83 77.22 209.03 139.41 0.00 0.00 8.28 2.47 0.00 18.97 36.00 517.63 85.18 341.06 165.69 73.60 134.02 44 E9a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 2.78 2.69 0.00 0.00 0.00 0.00 0.00 4.36 0.00 13.10 3.86 18.60 2.90 2.76 4.35 45 ER9b ExonRegion 0 0.00 14.75 16.73 14.29 3.01 8.66 17.60 22.31 16.47 15.89 0.00 0.00 0.00 0.49 1.83 1.10 9.28 20.45 5.56 20.24 13.57 1.54 12.13 46 ER10a ExonRegion 0 3.59 65.97 14.82 52.80 22.96 197.33 42.34 77.62 268.16 135.87 0.00 0.00 3.16 8.42 0.34 8.92 25.03 568.68 116.30 329.74 175.84 106.31 152.84 47 E10_Da KnownBoundary 0 10.00 104.06 19.48 73.75 43.55 264.62 73.93 87.20 338.97 130.58 0.00 0.00 0.00 15.25 0.00 0.00 34.69 799.26 128.94 398.91 213.44 140.53 221.18 48 ER10b ExonRegion 0 1.77 63.60 16.59 45.69 33.97 341.31 64.45 65.14 280.82 130.07 0.00 0.16 1.76 3.71 1.22 5.29 38.58 687.36 63.88 373.06 202.96 108.94 159.98 49 E10b_E11a KnownJunction 0 3.11 86.30 12.30 39.59 61.97 439.46 87.75 89.75 286.72 148.20 0.00 0.00 0.00 6.83 0.00 3.59 33.47 640.08 54.12 360.68 217.89 122.65 193.94 50 ER11a ExonRegion 0 5.26 101.83 10.77 61.45 64.22 629.99 119.26 101.74 367.35 179.75 0.00 4.85 6.96 13.19 1.45 9.64 49.71 883.11 139.53 463.63 223.04 135.14 224.56 51 E11_Da KnownBoundary 0 10.08 103.01 16.23 78.84 75.98 644.63 149.71 112.42 387.61 175.92 0.00 0.00 0.00 22.25 0.00 0.00 74.61 986.22 193.04 530.13 182.61 149.78 266.42 52 ER11b ExonRegion 0 8.98 81.08 18.28 52.10 40.30 381.22 75.01 96.82 337.14 164.11 0.00 8.06 0.82 6.48 0.08 1.32 41.36 842.80 88.58 435.60 220.56 147.37 187.56 53 E11b_E12a KnownJunction 0 0.00 69.86 19.19 47.45 19.27 296.31 50.57 96.65 339.44 161.04 0.00 11.70 6.66 10.30 0.00 0.00 34.50 807.88 83.11 433.74 211.77 108.69 142.21 54 ER12a ExonRegion 0 1.89 50.61 21.26 39.01 29.17 394.53 62.28 85.09 294.61 146.23 0.80 5.62 1.43 9.36 0.84 5.22 35.76 670.06 84.06 424.19 193.00 103.45 152.14 55 E12_Da KnownBoundary 0 2.82 53.87 29.80 37.92 44.23 401.59 63.95 96.36 337.76 166.97 0.00 0.00 0.00 7.89 0.00 8.12 38.62 552.82 63.63 420.45 186.75 98.46 188.82 56 ER12b ExonRegion 0 4.65 86.91 18.81 41.28 44.96 400.38 65.65 88.92 287.05 151.62 0.28 3.59 5.13 7.65 2.23 5.94 21.93 640.74 82.43 385.48 206.40 114.14 156.68 57 E12b_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E12b_E14a KnownJunction 0 17.78 245.29 23.59 74.02 98.30 417.03 71.76 100.22 357.55 145.48 0.00 23.86 13.64 10.01 0.00 0.00 27.12 448.65 92.24 399.29 140.17 126.20 153.65 59 ER13a ExonRegion 0 31.12 11.45 1.84 1.71 9.67 10.32 15.35 4.76 7.74 4.45 7.31 11.45 11.84 8.38 12.33 12.74 10.27 7.95 8.57 18.06 10.18 7.53 13.83 60 ER14a ExonRegion 0 10.18 286.79 23.73 60.31 82.49 378.98 93.92 105.32 338.65 162.34 0.95 10.95 4.96 7.14 0.14 7.92 25.42 387.90 69.50 346.73 146.80 143.82 131.64 61 E14a_E15a KnownJunction 0 27.34 348.95 26.37 81.04 141.94 513.51 138.94 129.26 369.44 214.60 0.00 7.35 12.50 10.60 0.00 12.30 30.95 353.35 58.26 308.08 155.56 161.11 103.29 62 ER15a ExonRegion 0 8.58 227.46 27.38 67.82 93.79 408.26 109.55 90.31 309.65 161.35 0.00 15.59 4.75 5.74 0.00 5.18 24.54 342.99 65.11 369.03 139.07 124.70 125.03 63 E15a_E16a KnownJunction 0 14.22 417.23 41.84 62.63 185.74 495.62 165.96 102.48 344.61 164.40 0.00 18.61 0.00 13.60 0.00 3.85 47.87 426.06 108.24 416.42 157.16 147.51 166.63 64 ER16a ExonRegion 0 14.82 336.22 31.04 53.15 139.14 438.89 132.40 90.46 322.36 148.72 0.00 12.99 0.00 9.74 0.00 5.94 36.31 421.29 87.07 381.56 165.28 143.76 153.68 65 ER16b ExonRegion 0 11.95 395.94 22.96 49.11 82.29 359.42 110.87 82.83 293.09 141.01 0.00 11.01 4.58 5.68 0.47 6.23 32.61 336.02 61.25 344.10 140.37 114.56 137.47 66 E16_Da NovelBoundary 0 3.26 58.87 3.08 17.45 8.66 14.25 19.74 16.06 41.20 20.55 0.00 12.30 0.00 5.36 0.00 3.50 8.60 87.92 40.47 94.47 13.59 20.15 16.39 67 E16a_E17a KnownJunction 0 19.48 332.97 15.52 51.54 74.45 365.93 93.36 111.11 312.29 156.50 0.00 6.00 0.00 8.01 4.45 3.59 16.74 294.11 47.91 344.77 123.99 124.49 145.29 68 ER17a ExonRegion 0 12.52 316.04 23.82 75.57 132.77 475.99 171.82 122.40 341.22 172.78 0.22 13.90 0.00 4.30 1.14 2.55 19.34 382.93 67.48 392.36 136.10 164.72 199.48 69 E17_Da KnownBoundary 0 3.78 22.50 18.51 27.20 7.81 6.53 19.03 14.66 21.67 16.55 0.00 0.00 0.00 0.00 4.45 0.00 17.30 17.04 0.00 12.34 5.93 2.27 0.00 70 E17a_E18a KnownJunction 0 25.78 300.34 20.16 77.41 186.50 671.66 257.34 153.49 405.35 179.01 2.05 37.81 0.00 4.83 0.00 4.36 13.37 487.74 85.93 433.17 116.08 196.19 227.58 71 ER17b ExonRegion 0 3.61 20.93 9.42 13.81 13.83 15.96 24.81 10.15 16.94 11.43 0.58 1.60 2.35 1.34 1.49 0.00 2.62 13.58 4.72 28.15 5.36 6.55 9.57 72 I17_AR3 ActiveIntronRegion 0 3.95 33.11 9.94 31.61 19.08 19.55 24.17 14.91 22.11 13.17 0.00 0.52 0.63 0.95 0.50 1.53 2.42 12.99 4.87 27.86 1.63 6.63 7.83 73 I17_AR4 ActiveIntronRegion 0 1.59 23.88 6.68 27.81 16.50 22.65 21.68 16.94 25.72 18.41 0.00 1.55 0.76 0.63 0.27 1.58 2.86 10.17 4.43 21.82 1.43 10.19 7.63 74 ER18a ExonRegion 0 12.74 327.85 32.09 88.46 131.19 542.28 162.73 127.16 350.17 191.51 0.88 11.67 2.63 8.42 3.15 6.70 29.80 532.26 93.91 414.32 140.07 166.93 179.53 75 E18a_E19a KnownJunction 0 10.30 461.56 24.13 76.11 101.27 407.66 154.22 128.97 388.05 188.65 2.68 26.11 6.82 14.54 0.00 4.19 18.14 529.73 116.71 444.80 116.33 158.59 158.18 76 ER19a ExonRegion 0 26.97 285.71 46.37 122.86 185.78 933.14 231.28 191.39 519.60 268.94 0.36 12.77 6.20 7.59 0.53 8.39 36.19 352.94 119.14 428.73 115.43 251.08 194.03 77 E19_Da KnownBoundary 0 127.65 550.95 53.96 127.79 364.09 1754.33 432.26 180.85 314.03 172.24 0.00 5.55 0.00 5.53 0.00 7.78 37.21 200.72 214.50 460.20 121.21 243.83 253.87 78 ER19b ExonRegion 0 50.21 552.97 136.48 286.49 341.35 1156.01 275.24 332.20 513.38 328.86 0.27 11.05 5.95 5.77 3.12 3.72 18.14 155.24 73.52 301.20 42.13 226.88 102.50 79 ER19c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00