Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC110079.2 Gene 0 125.55 179.56 130.61 138.39 79.60 51.36 94.76 140.50 175.62 195.05 102.94 124.35 218.95 179.17 158.48 159.33 140.29 151.12 108.06 124.47 141.49 90.25 91.66 2 426314 Transcript 0 31.87 39.44 37.26 40.21 21.73 13.09 24.47 34.63 36.81 44.74 26.47 31.60 34.59 43.67 42.87 42.66 37.34 38.89 31.96 27.61 39.28 21.24 34.83 3 499986 Transcript 0 57.91 32.90 56.62 53.08 33.85 32.70 45.93 70.45 75.07 96.96 38.37 40.14 47.36 45.58 31.61 58.22 46.82 96.65 52.04 52.45 48.64 23.46 38.53 4 424006 Transcript 1 23.78 17.56 74.27 46.08 26.99 19.25 16.87 78.04 77.86 52.81 43.64 36.01 0.00 30.78 10.75 73.57 40.02 43.36 35.86 40.78 56.65 35.45 42.17 5 ER1a ExonRegion 0 47.41 20.17 19.68 19.76 21.56 4.37 44.38 14.64 12.66 16.65 14.85 2.22 2.97 19.44 19.86 44.75 34.46 33.06 25.09 16.14 32.97 14.35 71.72 6 E1_Da NovelBoundary 0 7.04 6.12 8.22 11.22 11.38 9.65 10.51 27.81 49.94 38.73 7.53 6.00 8.28 9.89 18.42 20.17 12.72 62.72 45.27 9.46 5.62 3.06 13.06 7 E1a_E2a KnownJunction 0 22.08 9.34 7.57 5.49 8.83 0.00 12.81 2.55 6.34 14.67 16.58 5.70 6.82 4.94 4.45 14.70 12.34 9.53 4.89 0.00 22.43 0.00 7.26 8 ER2a ExonRegion 0 17.49 11.18 16.02 12.43 5.28 5.82 12.89 16.07 13.34 19.30 25.13 23.01 5.11 22.36 27.34 30.23 35.63 16.56 18.25 20.38 47.23 13.10 31.59 9 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 0 12.17 18.80 31.54 37.39 28.32 4.21 17.07 31.44 37.26 35.98 26.21 29.16 16.31 37.47 45.83 42.06 50.11 63.83 38.92 30.29 55.08 15.52 42.92 11 E3a_E4a KnownJunction 0 19.48 47.16 24.75 0.00 34.38 7.78 0.00 20.09 21.56 20.87 19.79 26.26 0.00 34.85 73.18 40.42 46.56 0.00 0.00 0.00 15.07 2.69 63.00 12 ER4a ExonRegion 0 67.67 49.14 76.86 125.05 65.74 49.93 88.15 93.12 95.28 95.37 53.39 116.05 77.68 107.05 86.21 96.15 64.54 131.12 108.44 82.52 59.34 49.07 88.62 13 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 I4_SR1 SilentIntronRegion 0 19.24 12.63 32.39 41.42 14.24 12.20 28.77 43.41 26.53 49.64 0.00 4.63 7.89 0.30 4.54 3.30 5.12 23.67 15.54 23.59 0.98 3.70 3.26 15 ER5a ExonRegion 1 21.72 18.65 38.93 73.49 13.96 16.76 27.27 62.09 59.63 72.63 41.22 105.71 86.87 109.17 62.13 91.59 65.26 103.36 121.78 56.66 99.57 39.33 74.55 16 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E6_Aa NovelBoundary 0 1708.67 675.60 399.69 561.27 573.01 616.01 996.80 480.48 411.45 611.59 384.10 591.94 588.60 451.24 366.40 877.63 539.04 948.29 1053.87 671.19 659.72 329.01 795.16 18 ER6a ExonRegion 0 214.41 135.47 158.47 206.79 159.45 141.24 205.25 148.35 157.21 210.17 165.83 192.19 223.82 179.84 138.16 211.22 191.10 257.33 233.40 212.22 256.14 92.89 177.29 19 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER7a ExonRegion 0 24.31 28.80 76.46 94.60 17.07 29.55 49.10 90.70 98.40 128.15 55.48 45.49 42.10 56.15 36.45 40.91 57.66 141.78 78.56 76.80 92.73 24.01 38.20 21 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E7a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 I7 Intron 1 3.55 2.50 31.87 37.48 5.99 2.46 5.92 20.17 30.47 31.54 23.56 18.91 4.72 29.73 12.86 21.28 39.87 17.48 28.86 26.42 45.34 13.28 29.23 24 I7_SR1 SilentIntronRegion 1 3.55 2.50 31.87 37.48 5.99 2.46 5.92 20.17 30.47 31.54 23.56 18.91 4.72 29.73 12.86 21.28 39.87 17.48 28.86 26.42 45.34 13.28 29.23 25 E8_Aa NovelBoundary 1 193.00 86.63 65.14 75.32 129.88 103.58 131.21 26.12 47.60 92.70 36.27 158.00 232.78 210.14 99.14 224.90 68.72 48.46 124.52 139.72 141.41 83.46 153.23 26 ER8a ExonRegion 0 40.56 22.18 45.07 33.48 17.38 19.04 24.54 74.56 76.04 94.84 28.18 42.78 37.24 50.32 45.73 63.30 32.39 104.15 36.05 39.13 17.80 23.11 27.61 27 E8a_E9a KnownJunction 0 67.79 51.18 106.92 72.35 36.08 49.29 39.13 174.24 163.86 237.70 30.96 18.91 42.85 17.25 0.00 86.47 55.54 190.56 49.51 58.55 29.84 20.27 41.49 28 E9_Aa NovelBoundary 0 321.54 151.55 412.23 532.00 317.32 352.13 331.75 284.68 280.90 435.43 142.46 69.77 135.22 101.07 60.82 335.89 201.59 595.31 261.94 383.31 328.96 131.16 321.56 29 ER9a ExonRegion 0 140.49 53.83 140.08 107.70 56.94 50.16 93.21 163.17 195.90 228.39 80.57 60.94 73.68 113.09 56.30 98.83 95.52 217.47 91.00 103.31 82.37 47.21 60.78 30 E9_Ab KnownBoundary 0 450.30 149.97 425.12 368.72 242.70 210.11 202.40 288.79 399.79 407.42 124.51 82.08 169.14 200.72 112.86 176.45 122.30 546.40 174.22 214.83 144.25 92.83 147.68 31 ER9b ExonRegion 0 180.91 65.38 159.88 152.60 132.97 71.16 122.62 158.20 213.03 211.87 176.91 138.29 108.98 177.07 138.25 179.44 173.66 216.47 156.46 172.32 172.99 91.66 141.38 32 E9a_E10a KnownJunction 0 23.78 17.56 74.27 46.08 26.99 19.25 16.87 78.04 77.86 52.81 43.64 36.01 0.00 30.78 10.75 73.57 40.02 43.36 35.86 40.78 56.65 35.45 42.17 33 E9_Db NovelBoundary 0 102.31 46.44 22.15 51.58 11.54 46.00 63.59 27.40 18.52 58.91 23.06 13.35 40.09 12.01 28.43 48.53 35.34 92.28 67.67 32.41 67.96 17.76 49.08 34 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER9c ExonRegion 0 0.00 0.55 2.45 4.34 0.97 1.83 5.30 3.30 7.52 4.59 1.41 6.30 1.28 4.13 12.66 5.94 0.00 3.70 6.37 6.38 3.01 4.17 1.07 36 ER10a ExonRegion 0 64.18 31.22 104.51 96.03 18.44 31.09 67.26 160.51 203.30 180.01 117.34 139.48 117.47 105.14 67.67 135.21 163.72 152.37 109.04 93.62 145.44 52.66 80.74 37 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER11a ExonRegion 0 92.05 69.49 101.12 110.73 63.64 33.57 67.40 120.36 161.72 154.22 112.42 128.07 178.20 145.65 102.83 164.99 150.70 155.67 94.89 116.68 120.95 77.54 119.66 39 E11a_E12a KnownJunction 0 47.34 22.63 69.54 66.16 16.72 0.00 15.94 80.14 104.34 114.14 59.38 52.52 53.41 44.74 9.39 51.01 38.15 91.99 3.86 31.06 42.13 32.76 39.18 40 ER12a ExonRegion 0 334.23 179.03 80.24 115.54 145.41 74.96 108.98 112.95 146.47 156.32 131.07 146.08 242.51 169.44 162.62 270.87 180.47 229.22 184.97 196.88 165.24 111.72 221.26 41 E12a_E13a KnownJunction 0 204.41 88.67 97.69 106.75 56.45 5.68 57.59 97.80 138.08 133.05 101.76 160.25 271.09 197.31 163.92 169.53 151.75 101.35 70.97 92.36 125.90 90.99 175.76 42 E13_Aa NovelBoundary 0 37.71 19.73 41.60 53.81 4.33 5.56 6.54 48.18 42.51 60.01 5.37 0.00 31.49 16.07 6.18 11.96 4.68 26.28 18.07 6.46 12.29 9.19 0.00 43 ER13a ExonRegion 0 149.49 100.19 107.50 137.42 35.44 23.25 78.22 115.14 199.25 184.70 128.51 124.94 280.56 165.29 142.09 149.52 186.12 150.66 81.27 100.44 160.76 107.38 100.60 44 E13_Da KnownBoundary 0 223.08 221.74 320.69 231.24 74.96 183.19 144.06 269.20 390.30 372.20 192.68 77.58 275.47 180.06 113.11 167.05 197.85 363.26 123.39 242.95 195.15 77.15 86.30 45 ER13b ExonRegion 0 129.31 121.88 110.61 125.12 63.20 32.92 85.48 140.00 241.70 193.42 104.35 149.82 336.63 212.41 179.70 185.53 160.30 165.73 106.95 104.65 133.32 99.68 96.22 46 E13_Db KnownBoundary 0 97.50 221.14 269.36 311.62 61.71 38.84 69.42 220.32 291.90 412.47 114.45 103.08 219.63 143.15 128.56 147.48 131.56 288.43 63.72 104.25 101.25 87.32 79.13 47 ER13c ExonRegion 0 152.78 278.68 159.10 163.63 100.74 63.28 115.45 174.23 210.55 247.79 121.82 151.16 292.49 232.93 212.64 195.60 169.67 167.83 123.07 157.04 174.26 115.48 97.06 48 E13_Dc NovelBoundary 1 373.55 281.86 803.46 732.07 154.16 233.96 158.90 513.84 452.48 655.54 264.54 57.47 153.72 204.02 295.20 400.49 252.17 998.45 289.23 278.68 524.12 109.00 272.91 49 E13c_E14a KnownJunction 0 12.89 0.00 2.84 1.96 0.00 8.92 8.52 1.52 2.72 8.22 6.53 0.00 0.00 2.47 4.82 3.76 8.42 11.40 8.38 2.43 2.59 0.00 0.00 50 I13 Intron 0 21.08 28.42 28.78 30.50 15.12 25.90 18.50 20.69 21.35 21.34 20.69 10.64 17.23 25.77 23.55 33.14 28.47 28.28 21.31 15.19 38.66 13.63 23.14 51 I13_AR1 ActiveIntronRegion 1 21.15 28.51 28.86 30.59 15.15 25.98 18.56 20.75 21.40 21.40 20.75 10.67 17.28 25.84 23.60 33.24 28.54 28.36 21.38 15.23 38.78 13.67 23.21 52 E14_Aa NovelBoundary 0 225.74 419.00 726.70 632.72 213.33 1306.24 256.63 653.36 382.49 761.51 248.38 86.73 161.52 170.23 310.53 255.06 232.82 1323.61 136.00 949.87 255.02 82.24 162.45 53 ER14a ExonRegion 0 57.61 52.08 4.88 3.20 12.64 2.74 2.95 11.22 1.47 6.98 18.96 6.78 21.07 28.55 51.05 42.21 20.95 2.41 1.71 1.23 12.42 13.89 18.34 54 E14_Da NovelBoundary 0 492.31 334.55 895.44 618.54 97.62 173.93 163.67 556.18 502.40 831.57 241.96 93.78 169.96 246.87 255.76 457.40 256.57 894.73 297.23 261.74 474.20 231.16 326.00 55 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 I14 Intron 1 36.30 44.72 13.10 19.01 12.52 3.43 10.32 12.05 8.91 14.66 20.50 4.69 10.28 28.04 56.48 29.20 26.26 9.89 10.93 11.61 23.34 13.00 12.37 57 I14_AR1 ActiveIntronRegion 1 36.52 44.98 13.18 19.12 12.60 3.45 10.39 12.13 8.97 14.75 20.61 4.72 10.35 28.20 56.77 29.37 26.40 9.94 11.00 11.69 23.49 13.07 12.44 58 E15_Aa NovelBoundary 1 328.21 366.32 504.62 498.17 166.55 96.82 90.31 436.04 337.41 510.48 135.82 25.66 68.50 184.89 290.62 209.09 109.77 406.04 132.71 232.28 228.14 150.88 196.42 59 ER15a ExonRegion 0 78.71 125.89 214.06 201.01 56.32 45.71 62.01 127.05 127.02 177.38 78.99 39.57 44.12 99.56 98.48 81.13 89.45 83.15 60.88 75.15 107.58 76.37 62.20