Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM190A Gene 0 5.28 11.11 8.67 8.14 6.32 11.96 19.09 11.09 7.56 11.94 11.54 19.64 20.26 20.89 8.70 16.37 40.99 15.04 15.23 18.53 0.05 0.34 0.39 2 432775 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 458365 Transcript 0 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 333691 Transcript 0 6.16 18.51 9.82 10.94 10.81 24.12 17.35 8.97 9.59 18.22 10.76 7.31 10.67 17.14 9.17 13.50 33.93 15.71 21.04 21.72 0.00 0.91 0.00 5 ER1a ExonRegion 0 1.03 1.99 2.71 2.65 1.32 1.42 7.12 2.10 1.82 2.96 0.00 1.74 3.28 0.65 2.61 1.47 5.48 1.52 3.67 2.77 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.50 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 1.86 1.11 3.06 0.00 6.75 15.50 4.19 4.12 3.32 4.51 3.73 1.03 6.59 9.59 6.29 16.21 44.17 6.91 14.79 14.84 0.00 0.00 0.00 8 E2_Ab KnownBoundary 0 6.89 3.35 5.17 1.47 14.26 35.83 12.54 12.12 7.09 11.93 7.58 6.00 15.10 21.31 18.05 22.81 73.40 18.61 35.01 28.44 0.00 0.00 0.00 9 ER2b ExonRegion 0 10.66 17.69 16.61 13.98 10.07 19.04 35.71 22.33 14.98 23.12 26.33 41.85 41.40 43.84 15.31 35.00 93.05 27.00 27.47 36.84 0.03 0.42 0.55 10 E2a_E3a KnownJunction 0 16.97 19.80 18.04 18.55 27.25 35.95 57.54 23.21 6.19 20.31 20.90 39.76 80.51 33.79 11.37 38.37 71.25 19.57 19.29 17.00 3.15 2.69 3.33 11 ER3a ExonRegion 1 16.87 20.31 15.64 14.51 19.03 28.34 40.33 25.92 11.06 28.64 19.73 55.21 62.85 45.95 25.00 35.57 70.91 24.48 19.35 35.81 0.96 1.00 1.52 12 E3a_E4a KnownJunction 1 6.59 19.40 12.21 16.51 28.52 23.62 58.78 30.23 12.12 29.49 17.90 49.37 79.54 60.63 10.88 38.54 72.28 11.98 26.82 39.37 0.00 0.00 3.84 13 ER4a ExonRegion 0 6.46 13.61 14.90 13.56 18.30 22.42 50.85 21.39 9.33 23.29 18.90 56.93 51.64 34.14 16.82 24.22 63.45 24.35 28.46 21.34 0.00 0.00 0.44 14 E4a_E5a KnownJunction 0 13.26 22.30 14.93 9.32 23.94 27.26 29.24 18.03 10.62 22.24 12.42 49.52 26.13 36.49 21.01 15.55 34.13 15.17 20.33 24.86 0.00 0.00 0.00 15 ER5a ExonRegion 0 7.24 18.79 13.51 14.52 10.06 18.35 31.25 20.38 11.85 20.99 16.44 34.56 36.51 53.33 19.49 26.23 58.82 22.83 22.69 31.07 0.00 0.00 0.73 16 E5a_E6a KnownJunction 0 15.71 34.80 26.70 15.25 8.66 18.06 29.15 11.13 15.89 15.45 29.43 27.91 45.61 52.92 34.61 27.51 75.18 38.80 23.72 17.39 0.00 0.00 4.35 17 I5_AR2 ActiveIntronRegion 0 2.25 0.04 0.00 0.00 6.72 0.00 9.84 9.38 0.00 0.54 0.00 0.00 5.55 0.00 1.01 5.46 13.07 0.00 9.95 2.52 0.00 0.00 0.00 18 I5_AR3 ActiveIntronRegion 0 4.50 2.03 0.00 0.00 5.35 0.00 7.45 7.99 0.77 2.44 0.00 0.00 10.55 0.00 2.90 1.86 16.50 0.00 3.19 2.39 0.00 0.00 0.00 19 ER6a ExonRegion 0 7.11 17.09 20.22 16.85 9.76 13.96 30.67 10.01 11.92 15.58 21.77 31.74 29.20 48.01 16.63 28.88 72.18 35.62 26.25 30.26 0.00 0.73 1.45 20 E6a_E7a KnownJunction 0 9.93 28.22 14.99 25.80 8.23 4.71 27.65 7.56 7.09 16.28 22.48 25.51 5.84 50.09 22.25 66.65 43.29 52.81 41.22 50.94 0.00 3.12 4.35 21 ER7a ExonRegion 0 6.73 17.96 21.10 16.16 11.22 15.52 19.71 3.52 6.40 22.75 20.57 19.26 21.83 33.81 15.99 34.29 76.43 34.54 39.33 32.05 0.00 2.14 0.75 22 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E7a_E9a KnownJunction 1 23.86 25.72 24.01 15.88 4.33 22.03 32.55 4.39 8.71 25.87 25.01 12.15 33.60 35.73 13.35 12.90 92.01 20.10 24.38 12.78 0.00 0.00 0.00 24 ER8a ExonRegion 0 0.90 2.86 0.77 1.73 1.23 0.71 4.46 2.35 0.54 0.62 0.57 2.20 3.82 0.68 1.16 1.75 3.24 1.63 1.46 1.95 0.00 0.00 0.19 25 ER8b ExonRegion 0 0.00 1.22 0.00 0.00 0.00 0.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER9a ExonRegion 0 6.25 19.85 13.51 15.82 11.34 33.82 33.02 5.76 5.82 28.03 25.56 20.20 13.90 37.86 21.59 17.90 58.24 25.63 30.53 26.67 0.00 0.57 0.00 27 E9a_E10a KnownJunction 0 3.78 25.06 16.71 13.72 28.52 23.85 21.02 13.18 8.65 39.73 14.11 12.60 19.64 31.55 18.42 35.89 54.89 32.91 22.59 34.20 0.00 3.12 0.00 28 ER10a ExonRegion 0 7.08 13.22 10.97 15.08 13.76 29.39 20.74 15.18 11.62 21.39 16.60 11.66 17.38 29.59 12.09 33.95 56.96 19.59 45.53 30.31 0.00 0.85 0.00 29 E10_Da NovelBoundary 0 0.00 5.99 9.93 7.89 3.48 0.00 22.70 3.86 8.97 14.45 2.63 0.00 6.82 2.41 5.07 11.54 12.53 16.17 8.85 18.02 0.00 0.00 0.00 30 E10a_E11a KnownJunction 0 5.93 12.89 5.00 11.19 12.39 32.82 13.25 7.48 11.52 11.31 2.42 0.00 0.00 0.00 5.19 0.00 4.02 0.00 16.57 26.78 0.00 0.00 0.00 31 I10_AR2 ActiveIntronRegion 0 2.30 11.14 9.18 10.20 1.90 2.53 7.64 5.38 2.24 1.33 1.56 4.25 18.82 1.62 5.80 3.97 2.82 1.47 2.69 8.35 0.00 0.00 0.00 32 I10_AR3 ActiveIntronRegion 0 8.00 1.83 3.88 3.34 8.48 1.25 6.05 4.67 1.58 4.91 10.86 12.38 23.66 17.34 26.58 8.35 29.99 4.92 3.67 4.37 0.00 0.87 0.00 33 ER11a ExonRegion 0 0.85 12.97 2.48 7.84 6.42 20.66 8.56 7.76 12.38 8.74 1.55 0.00 0.00 1.34 0.71 1.92 3.23 4.31 12.03 15.98 0.00 2.08 0.00 34 E11a_E12a KnownJunction 0 0.00 23.42 1.71 3.36 6.45 13.69 3.80 10.68 9.23 4.43 0.00 0.00 0.00 0.00 0.00 4.36 0.00 8.87 4.80 15.02 0.00 0.00 0.00 35 I11_AR7 ActiveIntronRegion 0 1.88 6.65 6.41 10.09 5.65 10.05 16.99 6.34 3.78 5.09 0.25 3.63 0.08 0.17 1.00 0.76 0.84 2.14 5.34 5.37 0.00 0.00 0.00 36 I11_AR8 ActiveIntronRegion 0 2.19 10.92 2.33 5.38 7.87 6.79 17.16 9.31 0.67 4.47 0.00 0.00 0.49 0.00 1.09 0.00 0.42 1.76 3.66 3.26 0.00 0.00 0.00 37 I11_SR2 SilentIntronRegion 0 0.14 0.98 0.50 0.66 0.47 0.24 3.32 1.46 0.43 1.00 0.28 4.19 11.89 10.64 1.83 0.16 6.12 0.09 0.61 0.58 0.00 0.00 0.00 38 I11_AR2 ActiveIntronRegion 1 0.00 0.00 0.00 1.36 0.00 0.00 1.32 1.73 0.00 0.19 1.93 8.66 23.45 26.53 13.06 0.00 16.50 1.85 0.00 0.00 0.00 0.00 0.00 39 I11_AR3 ActiveIntronRegion 1 0.00 0.00 0.15 1.36 0.00 0.00 1.32 1.73 0.00 1.15 1.93 8.66 20.52 22.13 17.41 0.00 16.50 1.85 0.00 0.00 0.00 0.00 0.00 40 I11_AR4 ActiveIntronRegion 1 0.00 0.00 1.23 0.68 0.00 0.00 0.50 1.73 0.00 1.15 0.00 8.66 18.76 24.16 19.58 0.00 9.49 1.85 0.00 0.00 0.00 0.00 0.00 41 I11_AR5 ActiveIntronRegion 0 0.00 1.05 1.36 0.42 0.00 0.32 3.20 2.97 0.00 1.79 1.66 8.09 18.70 70.96 8.83 1.03 6.42 0.33 0.00 0.37 0.00 0.00 0.00 42 I11_SR3 SilentIntronRegion 0 0.24 1.10 0.63 0.77 0.56 0.48 3.31 1.28 0.48 0.77 0.20 7.03 16.99 12.22 0.86 0.36 7.57 0.33 0.47 1.62 0.00 0.00 0.00 43 I11_AR6 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 22.76 3.01 4.21 2.53 2.29 3.05 0.00 0.00 0.00 0.00 0.00 0.00 44 I11_AR7 ActiveIntronRegion 1 0.32 4.34 0.83 0.80 0.00 3.05 10.30 0.53 0.17 0.24 0.00 9.03 27.21 4.04 1.54 0.15 1.61 0.00 0.96 2.00 0.00 0.00 0.00 45 I11_AR8 ActiveIntronRegion 1 0.00 4.52 0.00 2.73 0.00 0.00 12.28 2.69 1.24 0.32 0.00 21.65 11.99 8.48 0.00 0.00 0.00 0.00 0.00 6.38 0.00 0.00 0.00 46 I11_SR5 SilentIntronRegion 0 1.39 17.52 2.15 5.09 5.80 2.11 10.33 6.42 4.29 4.27 0.00 0.45 0.73 0.15 0.26 0.19 0.11 1.46 3.23 6.48 0.00 0.00 0.00 47 I11_AR10 ActiveIntronRegion 0 3.28 19.84 6.13 9.60 8.29 3.36 9.74 7.70 4.04 5.49 0.00 0.00 1.59 0.21 0.19 0.00 0.59 2.55 3.31 7.54 0.00 0.00 0.00 48 ER12a ExonRegion 0 1.55 14.93 4.15 4.63 3.29 16.73 5.90 7.29 8.77 6.28 0.81 1.87 0.81 1.08 1.99 1.07 2.08 14.26 11.88 12.01 0.00 0.66 0.00 49 IG48_AR1 ActiveIntergenicRegion 0 1.86 26.80 5.54 6.83 8.04 17.19 8.62 6.03 5.12 9.81 0.61 0.12 0.58 0.21 0.18 0.10 0.38 2.99 4.77 8.39 0.00 0.00 0.00 50 IG48_AR2 ActiveIntergenicRegion 0 1.83 21.83 3.66 9.23 7.34 18.52 5.01 5.46 5.28 10.32 0.22 0.00 0.32 0.07 0.34 0.00 0.28 0.92 2.93 3.61 0.00 0.00 0.00