Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SYNPO2 Gene 0 39.52 220.76 8.01 52.38 49.41 24.19 40.07 49.97 33.13 26.77 0.35 1.99 0.97 0.70 0.90 1.06 0.73 126.44 4.79 208.55 24.53 15.38 5.46 2 424855 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 429713 Transcript 0 59.30 213.59 9.53 69.94 62.94 27.46 50.51 50.22 30.09 23.53 0.31 2.85 0.71 0.62 0.36 0.63 0.33 57.91 3.96 170.36 23.32 18.76 5.88 4 434046 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 307142 Transcript 0 32.81 173.14 5.33 29.29 37.28 7.86 29.50 25.68 22.18 14.57 0.34 0.58 0.87 0.41 1.25 1.02 0.93 86.46 6.04 80.82 7.95 10.69 7.10 6 448416 Transcript 0 0.00 8.55 1.80 5.43 0.00 9.65 0.00 0.00 3.50 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 7.99 4.82 2.39 0.00 7 IG45_AR2 ActiveIntergenicRegion 0 0.00 2.92 0.56 0.00 2.01 3.90 4.43 0.00 1.79 0.00 2.60 13.39 3.08 5.56 1.13 2.69 0.00 1.91 0.00 4.95 6.37 1.17 1.10 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 9 ER1b ExonRegion 0 4.67 78.16 1.04 7.27 10.35 19.53 14.59 22.07 13.03 12.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 107.99 2.40 169.10 13.88 2.03 1.79 10 E1a_E2a KnownJunction 0 0.00 101.17 1.63 24.21 50.00 42.25 25.44 50.03 36.95 23.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 293.66 9.41 348.67 31.32 2.94 4.35 11 I1_AR2 ActiveIntronRegion 0 0.00 50.84 0.00 6.81 4.20 0.00 12.29 10.12 8.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 13.07 0.00 0.00 0.84 12 I1_AR3 ActiveIntronRegion 0 0.62 64.97 0.00 9.29 5.74 0.99 13.82 9.25 5.28 1.29 0.00 1.54 0.00 0.00 0.00 0.00 0.00 0.67 0.00 20.85 0.00 0.00 2.37 13 I1_AR4 ActiveIntronRegion 0 2.57 116.38 0.00 11.30 1.73 0.00 11.31 7.33 2.36 1.83 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.70 0.00 23.13 0.00 0.00 1.78 14 I1_AR5 ActiveIntronRegion 0 0.00 71.18 0.00 14.43 0.00 0.00 13.90 6.36 2.98 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.70 0.00 0.00 0.00 15 I1_AR6 ActiveIntronRegion 0 0.96 88.76 0.96 14.34 11.11 0.56 9.28 6.94 2.01 0.32 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.56 0.27 16.82 0.00 0.00 0.00 16 I1_SR2 SilentIntronRegion 0 0.18 116.25 2.20 16.18 17.50 1.22 14.07 8.43 0.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.92 16.58 0.00 0.00 0.00 17 I1_AR7 ActiveIntronRegion 0 2.12 98.80 1.23 16.01 15.16 3.67 16.55 8.64 0.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.62 0.00 0.00 0.00 18 I1_SR3 SilentIntronRegion 0 3.23 47.90 1.59 11.63 9.49 0.57 8.99 6.37 1.45 1.13 0.00 0.00 0.00 0.00 0.00 0.33 0.00 3.95 0.71 14.40 0.00 0.00 0.33 19 I1_AR8 ActiveIntronRegion 0 3.97 70.68 0.86 10.34 7.56 0.90 4.84 6.19 1.05 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.51 0.00 16.75 0.00 0.00 0.36 20 I1_SR4 SilentIntronRegion 0 1.66 78.77 1.25 12.07 6.82 0.56 9.56 10.25 2.07 1.82 0.00 0.00 0.00 0.00 0.10 0.00 0.00 6.90 0.43 26.42 0.23 0.14 0.60 21 I1_AR9 ActiveIntronRegion 0 2.15 77.16 0.62 9.15 6.13 0.00 9.65 3.92 2.51 1.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.36 26.01 0.25 0.00 0.00 22 I1_SR7 SilentIntronRegion 0 3.56 46.86 0.73 5.42 8.23 0.25 11.88 3.93 2.16 1.66 0.00 0.08 0.05 0.03 0.00 0.00 0.08 7.47 0.37 30.97 0.23 0.05 0.24 23 I1_AR12 ActiveIntronRegion 0 9.67 73.64 2.21 11.69 25.51 0.73 19.30 8.23 4.18 0.81 0.00 0.00 1.22 0.00 0.00 0.00 0.00 6.15 0.00 31.56 0.35 0.00 0.00 24 I1_SR8 SilentIntronRegion 0 1.98 65.55 0.40 8.00 8.98 0.20 11.00 6.87 3.28 1.79 0.02 0.10 0.11 0.00 0.04 0.00 0.09 3.31 0.36 23.88 0.06 0.00 0.13 25 ER2a ExonRegion 0 1.59 189.77 3.68 22.32 27.20 36.39 31.24 54.58 42.97 31.04 0.00 0.00 0.74 0.00 0.00 0.00 0.00 305.91 11.67 421.47 23.15 12.42 5.39 26 E2a_E3a KnownJunction 0 11.34 137.41 1.09 18.45 25.13 37.93 38.07 67.53 32.29 29.98 0.00 0.00 6.82 0.00 0.00 0.00 0.00 234.83 4.33 483.28 23.48 12.19 0.00 27 E2a_E5a KnownJunction 0 0.00 8.55 1.80 5.43 0.00 9.65 0.00 0.00 3.50 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 7.99 4.82 2.39 0.00 28 ER3a ExonRegion 0 9.32 151.95 3.74 24.05 20.89 34.28 28.73 49.01 46.34 32.14 0.00 0.77 0.87 1.13 0.26 0.75 0.00 285.25 6.72 413.55 26.18 10.32 5.70 29 E3a_E4a KnownJunction 0 14.30 224.57 12.21 31.76 19.27 20.27 29.19 47.89 38.74 28.72 0.00 0.00 6.82 2.41 0.00 0.00 0.00 267.95 0.00 507.37 52.57 9.86 14.85 30 ER4a ExonRegion 0 20.84 279.93 9.77 59.72 47.80 46.18 49.73 98.53 72.18 56.98 0.32 3.45 1.15 0.98 0.38 1.46 0.69 448.79 8.57 537.53 80.84 28.32 10.23 31 E4_Da KnownBoundary 0 18.60 338.69 8.84 55.24 144.82 70.93 42.84 94.88 63.83 42.93 0.00 13.65 0.00 0.00 0.00 0.00 0.00 257.92 0.00 482.38 52.45 16.53 8.11 32 E4a_E4b KnownJunction 0 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 33 E4a_E5a KnownJunction 0 22.30 51.24 1.83 10.79 17.74 2.90 23.36 12.24 20.78 6.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 137.09 7.15 81.81 13.28 11.02 10.07 34 ER4b ExonRegion 0 59.30 213.59 9.53 69.94 62.94 27.46 50.51 50.22 30.09 23.53 0.31 2.85 0.71 0.62 0.36 0.63 0.33 57.91 3.96 170.36 23.32 18.76 5.88 35 E4_Ab KnownBoundary 0 39.93 76.57 15.70 83.44 53.14 5.68 31.09 50.44 12.79 19.47 0.00 5.70 0.00 0.00 0.00 0.00 0.00 4.68 0.00 85.78 10.50 14.70 4.27 36 ER4c ExonRegion 0 33.15 58.13 13.10 86.80 49.97 9.79 27.36 52.08 14.15 16.21 0.00 0.34 0.00 0.00 1.02 0.00 0.00 12.12 2.85 103.34 7.10 11.12 3.13 37 E4_Db KnownBoundary 0 57.05 62.88 10.02 107.71 40.58 5.22 27.73 57.30 17.16 10.96 0.00 0.00 0.00 0.00 4.45 0.00 0.00 16.58 4.61 109.43 5.62 0.00 0.00 38 ER4d ExonRegion 0 16.42 37.32 1.86 17.35 10.87 2.81 11.79 8.20 4.91 3.60 0.00 0.27 0.00 0.23 0.10 0.00 0.00 9.49 0.32 49.45 1.67 2.65 0.57 39 I4 Intron 0 2.83 52.46 0.74 9.08 6.01 1.04 9.49 4.99 2.84 2.56 0.02 0.10 0.06 0.05 0.04 0.03 0.00 14.78 0.53 40.75 0.39 0.76 0.24 40 I4_AR2 ActiveIntronRegion 0 1.40 40.79 0.00 7.52 3.05 0.00 5.50 2.99 3.69 1.13 0.00 0.18 0.00 0.11 0.00 0.00 0.00 10.49 0.18 45.73 0.73 1.38 0.00 41 I4_SR2 SilentIntronRegion 0 3.76 36.19 0.64 6.72 5.97 2.65 8.45 4.12 3.54 2.66 0.17 0.19 0.41 0.12 0.09 0.00 0.00 15.86 0.00 45.62 0.29 1.91 0.26 42 I4_AR3 ActiveIntronRegion 0 2.90 37.63 0.99 9.19 3.07 0.50 7.97 5.43 3.60 2.55 0.00 0.39 0.00 0.00 0.00 0.00 0.00 5.44 0.51 46.86 0.65 1.52 0.00 43 I4_SR3 SilentIntronRegion 0 7.02 60.81 0.00 13.12 5.86 0.75 8.23 5.90 0.25 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.80 1.39 43.29 2.48 0.75 0.00 44 I4_SR4 SilentIntronRegion 0 4.62 46.25 0.66 15.04 10.09 2.17 13.35 8.51 4.65 2.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.24 1.12 45.27 0.78 1.52 0.52 45 I4_AR5 ActiveIntronRegion 0 6.17 80.28 1.61 16.49 10.31 0.31 13.71 5.52 2.28 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.82 2.07 36.49 0.29 0.50 0.38 46 I4_SR5 SilentIntronRegion 0 4.48 70.16 3.90 15.08 8.45 1.19 14.79 5.21 4.17 4.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.82 2.75 46.29 0.39 0.34 0.00 47 I4_AR6 ActiveIntronRegion 0 12.60 115.02 3.59 32.03 22.47 1.18 12.79 16.57 9.12 4.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.59 0.51 69.20 0.77 2.67 0.00 48 I4_SR6 SilentIntronRegion 0 1.88 46.16 0.35 8.52 4.21 0.56 8.73 3.09 2.03 2.15 0.00 0.05 0.06 0.04 0.06 0.04 0.00 12.19 0.70 36.95 0.23 0.21 0.22 49 I4_SR7 SilentIntronRegion 0 1.82 50.62 0.34 5.78 6.60 1.13 10.46 4.96 2.57 3.02 0.00 0.22 0.00 0.00 0.00 0.00 0.00 20.05 0.20 39.43 0.07 0.45 0.54 50 I4_AR8 ActiveIntronRegion 0 2.77 89.72 1.94 10.12 8.32 1.20 13.50 6.64 3.54 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.62 0.00 43.30 0.00 0.51 0.00 51 I4_SR8 SilentIntronRegion 0 2.45 104.96 1.32 12.05 9.29 1.33 12.64 11.74 3.87 5.07 0.00 0.00 0.00 0.17 0.00 0.00 0.00 22.55 0.69 43.11 0.48 0.00 0.42 52 I4_AR9 ActiveIntronRegion 0 2.32 115.52 2.00 3.34 4.40 0.00 9.44 0.00 2.96 2.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.55 0.00 23.27 0.00 0.00 0.00 53 E5_Aa NovelBoundary 0 12.59 161.55 0.00 17.55 10.87 0.00 14.18 12.65 7.09 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.28 9.04 41.42 5.07 0.00 4.18 54 ER5a ExonRegion 0 22.29 133.88 2.44 23.71 18.43 11.69 31.56 22.45 20.43 15.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.52 1.41 103.18 11.88 6.63 5.03 55 E5_Da KnownBoundary 0 13.78 208.84 3.90 28.00 31.15 20.10 38.47 23.86 23.61 18.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 113.21 0.00 106.10 2.90 6.00 8.45 56 ER5b ExonRegion 0 43.32 295.03 8.83 47.79 56.82 12.82 35.64 39.12 23.58 22.15 0.69 1.17 1.75 0.82 2.49 2.03 1.85 35.83 4.93 79.82 2.61 10.37 4.13 57 IG46_SR1 SilentIntergenicRegion 0 1.94 57.46 0.00 3.49 3.20 0.00 1.58 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 0.00 0.00 0.00 58 IG46_AR2 ActiveIntergenicRegion 0 1.63 28.75 0.00 1.92 1.27 0.00 0.21 1.76 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.23 0.00 0.00 0.00 59 IG46_AR3 ActiveIntergenicRegion 0 1.58 36.05 0.58 4.53 6.20 0.00 1.29 4.75 1.12 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 2.59 0.00 0.00 0.00 60 IG46_SR3 SilentIntergenicRegion 0 0.90 31.05 0.57 4.84 2.04 0.08 0.84 1.00 1.21 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 2.83 0.00 0.00 0.12 61 IG46_AR4 ActiveIntergenicRegion 0 0.97 27.70 0.00 3.69 1.21 0.28 1.40 0.78 0.56 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 1.64 0.33 0.00 0.00 62 IG46_SR4 SilentIntergenicRegion 0 0.00 18.23 0.16 2.09 0.00 0.00 0.00 1.76 0.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.33 0.00 0.67 0.00 63 IG46_AR5 ActiveIntergenicRegion 0 0.83 29.05 0.00 0.97 0.00 0.00 0.71 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 0.00 5.55 0.00 0.00 0.00