Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CXXC4 Gene 0 25.16 197.56 63.61 164.64 116.14 305.32 112.68 74.19 115.80 193.93 65.54 97.78 51.84 62.89 32.01 43.59 59.37 70.93 27.70 121.76 0.04 0.49 0.16 2 466963 Transcript 0 1.08 4.10 7.02 19.91 4.90 12.16 5.05 14.04 36.92 31.80 22.11 27.46 16.03 28.05 6.06 37.80 26.03 46.77 22.86 43.21 0.00 0.00 0.00 3 305749 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.21 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 4.52 0.00 0.00 0.00 0.00 4 394767 Transcript 0 5.29 117.06 9.48 21.05 35.15 38.74 14.40 9.77 5.68 20.48 4.29 18.10 7.90 6.96 8.49 2.63 1.87 1.15 2.40 6.37 0.00 0.11 0.00 5 426831 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.00 0.00 0.31 0.34 2.01 0.92 0.66 0.00 0.00 0.57 2.17 0.00 0.00 1.62 1.81 0.00 7.43 0.92 0.00 5.32 0.00 0.00 0.00 7 ER1b ExonRegion 0 2.58 24.43 11.56 34.87 19.98 114.08 33.00 20.35 45.41 59.01 61.12 18.35 11.11 48.99 18.35 73.29 103.73 142.71 42.15 99.87 0.00 0.00 0.78 8 E1_Da NovelBoundary 0 0.00 0.00 3.31 15.18 12.56 22.77 5.79 4.23 11.66 4.86 10.11 18.46 11.53 14.66 10.63 25.04 21.51 4.77 22.40 6.52 0.00 0.00 0.00 9 E1a_E2a KnownJunction 1 3.78 5.66 17.50 45.22 8.66 19.65 2.25 30.44 82.32 75.78 53.80 63.77 45.29 59.04 9.15 36.57 62.83 104.67 33.88 88.21 0.00 0.00 0.00 10 E1a_E3a KnownJunction 1 0.00 0.00 7.45 15.28 4.16 7.21 0.00 5.71 15.25 42.12 39.12 18.01 6.82 19.25 4.45 7.78 85.55 37.43 0.00 114.54 0.00 0.00 0.00 11 ER2a ExonRegion 1 0.56 5.14 8.58 29.97 8.94 25.19 15.52 21.36 51.53 49.27 32.45 46.09 18.82 44.13 13.28 111.38 33.88 81.50 57.55 76.62 0.00 0.00 0.00 12 E2a_E3a NovelJunction 0 0.00 7.96 8.25 12.25 12.31 34.24 7.42 13.55 28.39 51.74 35.69 6.15 20.29 9.54 8.90 4.19 13.00 51.36 7.72 29.34 0.00 0.00 0.00 13 E2a_E4a KnownJunction 0 0.00 5.59 1.69 4.13 0.00 2.90 1.77 4.35 13.83 1.56 0.00 0.00 0.00 7.42 0.00 3.25 0.00 0.00 0.00 2.68 0.00 0.00 0.00 14 E3_Aa NovelBoundary 1 0.00 0.00 4.55 1.86 0.00 0.00 1.94 0.00 1.19 1.24 32.06 23.41 0.00 7.18 0.00 0.00 54.14 0.00 0.00 4.99 0.00 3.12 0.00 15 ER3a ExonRegion 0 1.21 6.60 7.18 12.55 6.28 40.25 10.05 8.80 21.99 39.42 42.16 22.54 9.74 37.10 10.66 33.28 41.46 59.21 15.15 54.20 0.00 0.00 0.28 16 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.67 1.81 0.00 1.07 3.33 6.69 0.00 0.00 2.35 0.00 0.00 7.39 1.70 0.00 8.12 0.00 0.00 0.00 17 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 1.21 0.00 0.00 0.00 2.35 0.00 0.00 0.00 0.00 4.52 0.00 0.00 0.00 0.00 18 ER3b ExonRegion 0 0.00 2.12 0.00 0.03 0.00 3.31 1.06 0.00 0.97 0.86 2.94 0.00 2.00 9.84 1.86 2.31 3.70 0.48 1.65 3.40 0.00 0.00 0.00 19 E3_Ab KnownBoundary 0 0.00 0.00 0.00 1.43 0.00 0.00 0.00 0.00 1.42 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 20 E3_Ac KnownBoundary 0 0.00 2.96 4.55 0.00 3.65 4.83 0.00 0.00 5.15 7.28 4.69 11.40 0.00 11.07 0.00 0.00 3.46 3.32 0.00 2.81 0.00 0.00 0.00 21 ER3c ExonRegion 0 0.00 3.11 0.79 0.64 2.05 4.75 1.56 0.00 2.25 5.53 2.16 4.07 0.55 5.73 2.22 2.45 0.78 3.04 1.31 5.51 0.00 0.00 0.00 22 ER3d ExonRegion 0 4.18 54.98 28.94 59.91 27.02 114.14 36.08 33.96 59.05 105.34 94.49 55.25 22.63 90.66 27.02 61.52 94.48 136.62 25.41 100.04 0.40 0.19 0.53 23 E3_Db NovelBoundary 1 0.00 12.70 8.72 12.45 4.33 11.07 18.24 4.23 9.49 21.76 76.28 40.51 0.00 45.44 31.40 70.58 83.03 35.77 0.00 74.85 0.00 2.88 0.00 24 E3b_E4a KnownJunction 1 10.37 164.77 50.12 74.95 89.56 136.63 49.24 60.83 109.78 148.98 82.86 36.61 42.21 103.77 9.89 71.52 97.15 82.37 30.02 139.34 0.00 0.00 0.00 25 I3 Intron 0 0.51 13.22 4.66 9.15 5.66 12.02 15.19 3.77 6.18 11.91 13.68 35.16 14.44 16.12 2.70 8.63 11.16 5.32 1.92 28.91 0.00 0.10 0.08 26 I3_SR1 SilentIntronRegion 1 0.24 4.04 3.13 3.15 2.70 4.67 12.01 3.36 2.78 8.21 24.35 55.89 19.16 23.27 4.73 12.64 17.42 4.64 2.39 30.42 0.00 0.17 0.12 27 I3_AR1 ActiveIntronRegion 0 0.00 1.37 1.23 3.50 2.10 3.50 11.67 3.48 2.71 7.54 11.69 56.07 23.26 17.96 2.72 7.43 15.72 1.97 1.29 28.52 0.00 1.03 0.00 28 I3_SR2 SilentIntronRegion 0 0.37 6.37 4.97 8.62 4.32 6.60 18.63 2.12 2.06 5.71 9.69 32.71 10.72 14.29 2.96 6.47 7.82 3.75 1.01 22.69 0.00 0.03 0.07 29 I3_AR2 ActiveIntronRegion 0 0.00 4.07 7.82 10.31 3.47 2.64 7.29 3.05 1.86 12.48 11.71 11.05 4.53 10.31 2.42 4.23 12.22 3.13 3.44 23.36 0.00 0.00 0.00 30 I3_AR3 ActiveIntronRegion 0 0.63 19.46 7.44 9.46 5.26 6.25 17.19 4.93 6.41 11.59 6.64 29.05 11.27 12.25 4.05 5.47 4.08 3.52 1.48 26.82 0.00 0.41 0.00 31 I3_SR3 SilentIntronRegion 0 0.27 19.12 3.37 7.07 4.16 12.09 14.23 3.60 6.76 10.22 6.64 23.90 13.95 14.09 2.19 7.75 9.70 6.64 3.44 31.60 0.00 0.00 0.00 32 I3_AR4 ActiveIntronRegion 0 0.64 12.09 0.36 2.45 1.33 13.05 12.50 1.04 4.31 4.70 4.72 20.53 11.13 7.61 0.36 2.63 3.00 1.95 0.48 20.53 0.00 0.00 0.00 33 I3_SR4 SilentIntronRegion 0 1.34 42.46 2.11 8.97 6.74 19.03 16.51 3.77 9.74 16.85 10.91 18.44 11.33 13.65 0.37 9.43 11.92 12.25 2.53 36.14 0.00 0.00 0.23 34 I3_AR5 ActiveIntronRegion 1 0.63 36.30 6.54 21.32 10.48 34.79 30.20 6.83 21.29 26.22 12.33 18.86 16.54 14.37 1.15 7.93 9.03 7.93 2.53 48.71 0.00 0.00 0.00 35 I3_SR5 SilentIntronRegion 0 0.77 16.05 7.59 19.91 12.98 28.92 13.63 6.68 15.17 25.65 8.36 20.76 14.08 10.10 0.40 6.47 6.59 4.54 1.47 29.04 0.00 0.00 0.00 36 I3_AR6 ActiveIntronRegion 0 1.39 31.89 29.02 54.59 27.88 53.62 28.63 14.01 30.50 39.92 8.41 15.87 19.19 13.54 1.65 5.51 8.04 7.01 2.58 43.82 0.00 0.42 0.00 37 E4_Aa NovelBoundary 0 6.45 58.08 26.31 47.18 26.91 52.81 19.70 7.11 24.62 51.55 20.27 19.81 15.10 25.13 0.00 4.36 12.34 6.84 9.51 52.67 0.00 0.00 0.00 38 ER4a ExonRegion 0 26.04 238.64 86.36 169.32 151.68 303.06 122.31 72.02 147.50 174.84 78.80 93.58 78.21 83.56 19.68 52.04 59.80 95.67 25.98 141.66 0.00 0.59 0.00 39 E4_Da KnownBoundary 1 7.11 44.73 20.67 30.97 26.57 173.25 104.40 26.25 34.17 57.89 18.95 124.69 53.73 51.39 5.19 7.52 12.16 9.49 7.91 71.72 0.00 0.00 0.00 40 ER4b ExonRegion 0 20.81 215.33 57.81 172.74 124.51 373.04 140.92 84.17 142.25 235.08 69.41 133.93 72.00 69.95 27.19 45.34 64.28 58.70 25.45 141.33 0.00 0.72 0.11 41 E4_Db KnownBoundary 1 62.46 306.85 115.73 265.70 236.50 609.99 187.03 92.42 184.23 272.27 49.33 75.47 116.23 68.63 108.66 19.74 36.00 57.00 13.93 120.80 0.00 0.00 0.00 42 ER4c ExonRegion 0 69.98 393.11 148.89 348.09 240.81 503.21 182.72 135.73 170.82 304.34 71.75 112.01 57.18 60.71 69.90 36.08 48.86 75.85 43.63 156.19 0.00 0.56 0.00 43 E4_Dc KnownBoundary 0 6.67 51.24 11.50 28.37 3.82 34.47 9.14 8.71 10.27 39.43 8.90 6.15 0.00 2.24 8.90 0.00 0.00 0.00 0.00 8.44 0.00 2.57 0.00 44 ER4d ExonRegion 1 10.58 232.01 18.95 42.08 70.30 74.17 27.75 19.53 10.40 40.10 5.63 36.19 13.80 4.08 15.13 2.94 0.03 1.83 3.15 9.34 0.00 0.22 0.00