Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	PAQR3	Gene	0	28.53	150.26	73.01	218.35	58.31	57.86	78.71	68.74	48.80	74.50	37.03	64.05	31.93	35.15	23.29	16.04	34.66	41.82	25.86	101.19	12.71	54.57	27.43
2	395594	Transcript	0	18.83	113.24	59.28	168.25	43.70	43.22	57.69	52.73	34.31	54.13	17.18	41.25	20.32	16.47	12.20	6.88	12.77	16.61	14.56	60.51	4.19	36.65	13.97
3	295462	Transcript	0	0.00	5.06	14.49	14.05	0.00	0.00	7.99	0.00	4.11	2.69	7.84	0.00	0.00	5.18	0.00	0.00	8.88	17.33	4.52	9.27	6.30	5.39	4.35
4	443344	Transcript	0	0.00	0.00	1.36	8.69	0.00	0.00	8.26	0.00	3.21	1.53	7.63	0.00	6.17	2.41	0.00	0.00	4.77	15.42	0.00	5.88	2.53	3.12	0.00
5	380645	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
6	342820	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	ER1a	ExonRegion	0	1.21	0.00	0.00	0.00	0.00	1.89	0.00	0.00	0.00	0.59	3.98	0.00	0.00	0.14	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
8	E1_Ab	KnownBoundary	0	7.19	0.00	0.00	0.00	0.00	10.11	0.00	0.00	0.00	2.66	12.63	0.00	0.00	0.00	0.00	0.00	3.74	6.18	0.00	0.00	2.84	0.00	3.59
9	ER1b	ExonRegion	0	0.65	10.21	8.33	18.70	5.24	12.09	13.24	10.47	11.81	18.14	16.97	4.57	5.26	21.75	5.26	5.45	24.92	48.10	10.81	40.46	15.49	15.20	18.88
10	E1_Da	NovelBoundary	0	0.00	0.00	0.00	4.10	0.00	2.78	0.00	1.73	3.24	3.22	6.58	0.00	0.00	4.94	0.00	0.00	12.53	11.03	0.00	25.82	13.16	3.12	0.00
11	E1a_E2a	KnownJunction	0	6.37	14.93	6.80	40.82	20.97	21.07	38.51	33.52	24.71	36.83	30.74	37.36	12.99	39.56	8.90	7.60	37.87	58.20	12.61	83.86	12.17	38.45	22.71
12	E1a_E3a	KnownJunction	0	0.00	5.06	14.49	14.05	0.00	0.00	7.99	0.00	4.11	2.69	7.84	0.00	0.00	5.18	0.00	0.00	8.88	17.33	4.52	9.27	6.30	5.39	4.35
13	I1	Intron	0	0.94	6.31	1.70	5.66	0.94	2.63	5.09	2.63	5.30	4.26	7.26	11.70	7.07	5.21	0.30	3.04	7.91	10.17	6.45	29.86	3.03	4.18	4.91
14	I1_SR1	SilentIntronRegion	0	1.26	3.62	0.87	3.62	0.32	0.87	2.98	0.92	6.11	2.64	6.19	6.37	7.33	6.38	0.24	4.58	4.31	8.61	5.29	31.04	2.61	2.22	4.88
15	I1_SR2	SilentIntronRegion	0	0.89	6.82	1.85	6.05	1.06	2.95	5.49	2.95	5.16	4.56	7.46	12.70	7.02	4.99	0.32	2.75	8.59	10.46	6.68	29.66	3.11	4.55	4.92
16	E2_Aa	NovelBoundary	0	3.04	25.39	3.13	12.85	8.15	0.00	9.54	3.94	10.73	11.85	15.27	43.21	6.82	2.47	0.00	0.00	4.30	8.17	0.00	49.02	2.90	3.06	4.35
17	ER2a	ExonRegion	1	5.17	58.84	18.60	62.90	21.37	43.68	46.64	39.19	38.55	59.97	55.07	72.67	25.87	56.00	8.26	16.99	56.76	73.74	29.10	132.88	27.49	58.49	29.47
18	E2_Da	NovelBoundary	0	0.00	26.31	3.05	9.96	0.00	6.64	6.14	0.00	7.55	10.69	12.63	47.27	34.58	9.65	0.00	0.00	3.65	18.07	3.95	44.55	6.30	3.12	0.00
19	E2a_E3a	KnownJunction	0	10.22	79.06	28.89	85.54	46.86	26.35	41.56	34.87	37.33	66.43	50.12	44.86	12.99	43.32	23.36	22.47	55.17	38.55	38.50	125.41	16.49	35.70	41.49
20	I2	Intron	0	5.00	28.95	6.39	30.18	6.79	7.57	12.85	10.63	10.52	14.54	8.55	20.10	15.84	5.13	1.32	3.15	6.45	8.15	5.92	37.83	3.80	9.58	7.01
21	I2_SR1	SilentIntronRegion	0	2.44	18.59	2.50	16.49	4.33	5.36	10.13	7.45	9.33	11.43	7.45	21.79	15.75	4.69	1.19	2.13	7.29	5.78	4.26	36.72	3.36	7.84	6.48
22	I2_AR1	ActiveIntronRegion	0	3.75	55.19	4.25	24.54	0.00	2.30	8.00	5.40	7.95	15.12	7.58	16.25	10.46	4.31	0.92	3.60	2.72	12.51	12.06	45.06	8.33	9.46	2.65
23	I2_SR2	SilentIntronRegion	0	7.31	36.97	10.20	43.62	9.22	9.53	15.55	14.15	12.03	17.88	9.68	19.24	16.84	5.64	1.47	4.00	6.11	10.23	7.13	39.23	4.10	11.03	7.92
24	I2_AR2	ActiveIntronRegion	0	4.50	16.54	0.11	4.90	8.78	12.66	11.67	1.37	4.05	1.29	6.22	13.39	4.45	3.84	1.09	3.22	3.51	2.44	3.38	21.56	0.00	11.07	3.40
25	E3_Aa	NovelBoundary	0	10.74	54.66	27.11	86.07	4.24	12.10	32.72	15.85	7.96	22.62	9.27	20.26	6.49	12.60	0.00	0.00	13.93	14.55	4.80	40.52	2.97	19.66	4.10
26	ER3a	ExonRegion	1	17.79	142.17	45.32	177.41	41.54	62.37	75.65	54.29	66.18	85.79	63.56	74.18	35.30	60.11	12.14	25.63	67.75	101.19	49.41	200.69	30.50	63.95	53.05
27	E3_Da	NovelBoundary	0	0.00	3.35	1.24	15.38	8.66	0.00	8.48	4.93	4.37	4.06	4.26	11.55	0.00	2.24	0.00	0.00	15.43	2.11	0.00	6.52	4.94	4.71	0.00
28	E3a_E4a	KnownJunction	1	25.86	100.31	61.65	232.30	53.74	75.07	80.86	43.74	55.64	80.91	37.96	82.83	6.82	60.80	28.93	44.01	71.72	174.77	76.24	195.52	35.58	84.13	56.00
29	I3_AR2	ActiveIntronRegion	0	3.44	6.63	0.00	4.18	2.76	0.00	7.14	0.00	0.36	1.03	2.06	17.32	0.00	1.06	2.00	0.10	4.55	5.15	0.00	5.16	0.00	2.05	4.09
30	ER4a	ExonRegion	1	19.59	154.72	42.77	232.85	42.88	65.31	83.34	57.78	60.94	86.49	66.64	81.82	40.65	76.22	19.58	39.00	79.20	164.53	64.48	220.51	48.00	68.57	79.94
31	E4a_E5a	KnownJunction	0	13.71	239.63	40.18	241.16	85.06	102.27	142.29	64.32	56.16	75.91	65.44	69.47	39.61	91.77	28.56	33.24	53.20	210.17	78.31	190.41	53.07	83.64	106.87
32	ER5a	ExonRegion	0	23.96	176.59	30.63	210.48	55.78	57.71	72.69	63.97	54.89	82.33	58.28	73.08	40.56	69.52	22.73	24.50	70.19	160.45	52.68	196.77	36.40	50.85	73.29
33	E5a_E6a	KnownJunction	0	0.00	0.00	1.39	8.99	4.07	0.00	6.09	0.00	1.42	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.16	0.00	2.56	0.00	0.00	0.00
34	E5a_E7a	KnownJunction	0	0.00	0.00	1.36	8.69	0.00	0.00	8.26	0.00	3.21	1.53	7.63	0.00	6.17	2.41	0.00	0.00	4.77	15.42	0.00	5.88	2.53	3.12	0.00
35	E5a_E8a	KnownJunction	0	36.23	194.77	52.75	180.06	33.19	67.92	97.69	50.32	60.71	76.45	33.06	83.43	52.43	72.11	30.16	32.30	50.58	107.41	63.91	182.29	28.29	40.05	38.50
36	E6_Aa	NovelBoundary	0	0.00	0.00	1.83	5.66	7.89	2.84	10.33	2.55	2.46	1.24	4.79	24.16	0.00	2.41	0.00	11.28	13.09	5.10	0.00	18.92	3.15	6.25	0.00
37	ER6a	ExonRegion	0	0.70	4.68	1.08	9.09	3.09	1.21	7.29	1.69	1.90	2.25	4.45	7.26	1.27	3.08	0.67	0.98	7.54	1.63	0.21	10.56	3.63	2.06	3.81
38	E6a_E7a	KnownJunction	0	0.00	0.00	0.00	1.86	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
39	ER7a	ExonRegion	0	3.46	14.13	5.76	33.92	6.35	5.99	10.84	6.08	7.34	6.43	11.97	5.33	4.69	7.36	0.37	8.63	12.01	18.06	14.24	22.69	7.79	11.15	7.97
40	E7_Da	NovelBoundary	0	0.00	2.50	3.22	18.38	0.00	4.60	16.65	1.64	4.48	5.59	17.48	7.50	6.17	0.00	0.00	12.56	3.55	7.79	0.00	5.62	3.15	8.76	4.35
41	E7a_E8a	KnownJunction	0	0.00	3.29	1.80	14.25	11.71	0.00	0.00	0.00	5.76	0.00	7.58	0.00	0.00	7.06	0.00	0.00	4.77	0.00	0.00	9.59	2.53	0.00	0.00
42	I7	Intron	0	2.73	4.70	5.60	18.06	9.52	6.52	13.60	7.45	6.38	6.84	7.31	14.92	7.41	4.53	1.10	4.49	3.08	3.44	4.39	13.81	1.18	10.66	2.74
43	I7_SR1	SilentIntronRegion	0	2.10	5.44	2.98	6.92	4.45	3.21	12.05	5.00	5.89	5.48	7.90	11.42	6.44	5.29	1.22	4.27	3.51	3.60	3.53	10.70	0.54	7.04	2.50
44	I7_AR1	ActiveIntronRegion	0	3.35	4.61	6.72	23.97	12.60	8.72	13.60	10.68	6.88	7.67	7.25	17.02	9.60	4.19	0.69	5.62	2.53	2.91	5.37	15.65	1.96	13.62	2.93
45	I7_SR2	SilentIntronRegion	0	2.12	1.76	7.76	34.16	19.27	11.25	19.42	6.91	4.94	8.26	8.25	12.99	0.00	5.52	2.90	0.00	4.84	7.76	4.25	7.66	0.00	11.53	10.38
46	I7_AR2	ActiveIntronRegion	0	2.50	3.62	8.20	25.41	11.63	7.54	16.64	4.23	6.32	7.54	6.17	17.23	4.30	3.74	1.80	2.36	3.52	4.21	3.68	16.29	0.58	10.63	2.21
47	E8_Aa	NovelBoundary	0	24.37	68.74	28.30	100.89	13.50	56.39	44.96	24.27	30.18	38.68	14.90	28.06	6.33	22.13	9.52	17.35	18.89	37.02	26.35	73.89	4.82	30.49	16.99
48	ER8a	ExonRegion	0	21.31	179.89	45.73	217.64	34.84	52.50	82.00	60.20	63.16	81.86	60.17	76.91	28.55	42.37	18.43	22.45	64.06	81.83	51.42	179.60	20.50	45.80	38.53
49	E8_Da	KnownBoundary	1	15.56	211.28	80.13	243.59	47.03	88.59	107.49	57.67	78.30	83.76	51.22	75.62	6.82	65.87	23.12	15.81	48.15	85.81	44.52	173.47	15.51	84.87	22.37
50	E8a_E9a	KnownJunction	0	2.96	11.71	0.00	7.49	0.00	2.90	0.00	0.00	0.00	1.02	0.00	0.00	0.00	0.00	0.00	3.76	0.00	0.00	0.00	8.88	0.00	2.69	0.00
51	ER8b	ExonRegion	0	36.44	226.49	118.55	336.51	87.41	84.56	115.39	105.46	68.61	107.68	30.39	82.49	40.65	32.80	24.40	13.75	25.55	33.21	29.12	121.02	8.38	73.29	27.93
52	ER9a	ExonRegion	0	5.80	4.54	0.86	6.56	2.50	3.09	4.62	5.55	3.99	5.28	7.84	1.95	6.06	5.36	2.37	1.19	7.01	4.88	2.71	6.61	1.05	4.93	2.57
53	E9a_E10a	KnownJunction	0	2.89	2.76	2.90	7.06	0.00	0.00	4.50	2.14	1.42	1.29	7.26	0.00	6.66	2.35	10.38	0.00	4.77	2.03	0.00	2.68	0.00	2.94	0.00
54	I9	Intron	0	94.81	32.01	19.16	36.09	51.54	17.36	30.22	24.21	11.67	22.08	71.04	70.63	62.18	46.79	94.33	29.46	44.65	2.96	5.20	9.23	5.09	62.19	11.16
55	I9_AR1	ActiveIntronRegion	1	231.75	77.99	46.72	87.18	125.43	42.19	72.21	58.90	27.71	53.41	172.14	171.83	151.49	112.01	231.07	72.30	108.65	6.96	12.58	19.86	12.36	149.86	26.72
56	E10_Aa	NovelBoundary	0	301.91	80.51	63.24	139.71	205.52	69.56	182.48	44.85	45.17	73.79	294.55	153.80	108.76	162.05	225.60	97.07	180.36	17.70	21.27	17.19	25.88	128.65	26.29
57	ER10a	ExonRegion	0	160.40	78.25	40.38	65.43	101.50	39.18	63.21	32.57	23.83	32.09	232.91	157.61	83.17	150.16	191.68	95.85	185.98	15.81	9.08	17.93	31.95	93.84	39.95
58	E10_Da	NovelBoundary	0	197.44	142.94	30.01	73.52	146.94	63.09	118.93	59.76	38.28	76.48	354.14	158.60	125.97	166.52	263.06	106.21	237.03	15.88	26.73	30.42	29.22	111.26	36.96
59	E10a_E11a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	4.20	0.00	0.00	2.95	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
60	I10	Intron	0	62.07	38.44	14.26	49.41	71.37	39.68	56.62	27.26	23.95	43.82	217.56	250.91	213.40	155.18	81.71	68.52	166.34	10.51	7.94	23.41	19.24	103.23	27.16
61	I10_AR1	ActiveIntronRegion	1	62.12	38.47	14.27	49.44	71.42	39.71	56.66	27.28	23.97	43.85	217.72	251.09	213.55	155.28	81.77	68.57	166.45	10.52	7.94	23.42	19.25	103.30	27.18
62	Ix_SR3	SilentIntronRegion	0	11.17	4.96	2.54	8.80	7.08	8.37	8.22	6.51	3.77	9.09	18.89	16.55	15.93	7.01	3.12	5.76	25.84	2.32	1.78	9.99	2.15	9.46	3.92
63	E11_Aa	NovelBoundary	0	0.00	0.00	0.00	2.06	0.00	2.61	6.32	2.09	1.36	1.21	6.63	30.31	14.93	5.12	4.45	7.86	26.37	0.00	0.00	9.52	0.00	5.27	0.00
64	ER11a	ExonRegion	0	2.04	0.11	0.16	0.73	0.00	0.00	1.27	0.32	0.09	2.34	2.29	6.98	4.34	0.18	5.86	0.00	3.30	0.14	0.00	0.08	0.24	0.00	0.00
65	E11_Da	NovelBoundary	0	0.00	2.76	0.00	1.40	0.00	9.77	5.65	0.00	0.00	0.00	12.58	12.60	6.82	4.71	4.45	0.00	4.77	0.00	0.00	2.49	5.50	0.00	0.00
66	E11a_E12a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
67	Ix_AR1	ActiveIntronRegion	0	21.19	2.56	3.31	6.56	11.81	0.72	7.31	4.67	2.90	4.04	7.47	25.43	18.92	2.29	8.76	7.97	24.72	1.02	1.26	2.18	2.08	0.99	0.93
68	E12_Aa	NovelBoundary	1	24.37	0.00	2.42	8.39	3.74	0.00	12.94	12.77	6.16	2.66	9.48	43.51	60.55	4.65	17.80	7.86	13.28	0.00	0.00	6.26	0.00	2.39	0.00
69	ER12a	ExonRegion	1	1.35	3.54	0.00	5.71	7.75	1.06	2.30	2.81	1.07	0.99	12.26	18.20	15.72	4.71	10.81	0.00	17.22	1.07	0.00	1.23	1.28	1.21	1.77
70	E12_Da	NovelBoundary	0	11.26	0.00	6.77	14.92	12.99	0.00	6.32	19.80	4.60	8.54	30.85	31.06	13.47	9.95	19.66	16.41	16.83	0.00	0.00	3.13	0.00	8.14	4.35
71	E12a_E13a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
72	E13_Aa	NovelBoundary	0	7.26	0.00	1.74	2.90	4.07	0.00	28.13	6.57	1.68	4.00	7.32	24.76	20.29	21.78	5.19	8.20	35.25	0.00	0.00	0.00	0.00	2.88	0.00
73	ER13a	ExonRegion	0	1.38	0.66	1.19	3.32	2.61	0.00	2.58	2.51	0.60	2.78	6.91	6.95	10.04	2.20	6.78	2.90	8.58	0.00	1.03	0.00	0.00	1.35	1.87