Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GSTCD Gene 0 16.59 49.33 22.02 28.59 31.63 40.80 33.77 18.44 20.41 41.14 72.75 105.32 74.30 100.29 56.69 55.61 84.23 41.94 33.80 48.17 15.66 20.62 17.07 2 394730 Transcript 0 0.00 0.68 0.00 0.49 0.00 0.00 2.09 0.00 0.00 1.15 3.35 9.25 2.11 4.71 0.97 1.08 5.95 0.00 1.47 1.09 0.00 0.96 2.59 3 484843 Transcript 0 0.36 3.75 1.27 3.09 2.80 1.38 8.66 1.71 1.55 3.31 3.99 7.34 8.61 5.55 1.25 4.29 7.75 5.13 3.64 7.44 0.71 1.79 0.60 4 360505 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.02 0.00 1.66 0.00 1.02 0.06 0.00 0.04 0.00 0.00 0.00 0.00 0.00 5 394728 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 2.96 3.21 1.49 2.50 1.79 13.98 7.57 3.21 2.29 8.99 10.53 3.67 3.34 24.66 14.91 16.70 17.46 10.51 7.65 19.03 2.55 3.04 6.96 8 E1a_E3a KnownJunction 0 2.89 5.72 4.49 9.96 0.00 13.51 2.12 11.83 7.44 27.69 57.59 7.65 13.47 109.90 32.63 87.75 58.72 49.08 28.05 67.18 7.66 8.76 24.50 9 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.04 0.00 3.31 0.00 2.05 0.12 0.00 0.07 0.00 0.00 0.00 0.00 0.00 10 E2_Da NovelBoundary 1 6.30 3.35 4.38 5.06 3.99 0.00 3.97 4.85 1.74 1.34 0.00 0.00 40.42 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E3_Ab NovelBoundary 0 6.67 13.88 1.60 17.08 0.00 25.16 3.49 11.38 7.20 29.90 45.43 48.77 37.34 58.16 34.37 64.00 40.95 67.28 30.49 51.71 0.00 13.23 4.10 13 ER3a ExonRegion 0 2.60 7.86 3.23 10.72 0.61 12.34 2.47 14.22 7.86 33.63 56.14 28.34 28.57 92.72 48.53 81.46 52.06 51.82 36.49 66.15 4.11 12.22 12.81 14 ER3b ExonRegion 0 1.33 33.29 9.54 21.47 18.47 33.84 32.25 15.84 20.14 50.95 92.34 127.27 92.43 81.97 33.68 63.10 94.38 55.56 28.05 71.86 8.30 24.82 20.56 15 E3_Da KnownBoundary 0 2.96 90.77 27.23 42.79 15.87 18.68 40.59 22.96 33.62 57.89 107.24 150.65 100.97 108.07 40.67 62.63 131.18 43.28 21.74 103.23 17.67 32.76 26.72 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 6.27 0.00 0.00 0.00 10.06 27.76 6.33 14.13 0.00 3.25 17.86 0.00 4.42 3.26 0.00 2.88 7.77 17 ER3c ExonRegion 1 8.39 36.50 14.33 28.65 21.99 38.36 33.07 20.28 34.07 50.08 129.99 211.08 138.71 131.39 32.94 95.34 138.12 65.17 55.84 88.85 22.66 31.49 29.65 18 E3b_E4a KnownJunction 1 3.11 48.35 9.02 25.07 8.23 49.86 31.27 19.26 23.47 44.51 92.23 171.36 204.53 132.38 20.52 135.43 125.20 72.13 55.91 73.25 19.52 15.80 24.58 19 ER4a ExonRegion 1 10.86 43.62 9.84 19.72 23.30 47.50 34.70 22.10 32.46 49.16 141.14 167.22 152.25 181.61 46.29 108.10 174.28 99.57 57.77 71.92 40.86 27.78 33.70 20 E4a_E5a KnownJunction 0 16.00 45.85 16.00 23.27 23.01 59.06 64.92 44.40 30.24 47.30 109.24 219.67 86.84 142.80 87.15 70.75 147.92 68.11 72.28 59.95 30.02 36.86 35.43 21 I4_SR3 SilentIntronRegion 0 0.35 2.43 2.23 6.10 3.21 2.48 5.35 2.50 1.45 5.80 7.62 27.37 22.27 6.91 1.09 7.06 4.01 1.81 3.00 6.76 0.44 4.00 0.80 22 I4_AR4 ActiveIntronRegion 0 0.23 3.08 2.14 3.54 4.93 3.25 5.85 3.13 3.22 5.99 6.33 17.84 20.50 4.29 1.11 5.73 4.60 1.55 0.35 3.21 0.00 2.24 1.62 23 I4_AR5 ActiveIntronRegion 0 1.04 3.99 1.94 6.76 3.15 4.48 7.53 4.04 1.81 5.85 3.98 17.02 16.85 5.77 2.18 6.08 5.18 2.42 0.31 4.38 0.00 1.63 2.59 24 ER5a ExonRegion 0 12.35 53.37 18.42 28.42 21.10 40.45 40.53 29.23 28.12 51.31 106.11 115.93 105.45 166.41 56.87 88.76 147.35 75.74 60.62 77.87 30.53 26.50 28.97 25 E5a_E6a KnownJunction 0 32.38 95.38 21.55 32.66 22.84 60.42 33.12 16.92 28.24 43.09 155.83 164.45 141.71 166.11 66.88 92.45 200.00 91.61 86.68 83.86 28.60 17.88 36.45 26 ER6a ExonRegion 0 15.04 73.25 24.65 29.93 26.33 47.56 39.83 14.16 17.32 46.25 108.67 133.84 112.96 168.03 45.80 103.52 164.31 105.13 73.43 89.09 29.63 19.66 20.96 27 E6a_E7a KnownJunction 0 10.15 66.17 19.57 27.30 59.42 40.60 43.24 0.00 18.69 26.06 88.60 120.04 39.28 178.47 56.37 61.35 147.26 69.93 30.12 106.29 28.48 27.68 20.23 28 I6_AR1 ActiveIntronRegion 0 3.25 12.26 4.49 17.98 10.77 13.52 15.59 7.58 11.56 11.93 4.14 12.77 12.94 1.93 8.39 4.52 7.63 5.02 2.57 8.59 0.81 0.67 2.51 29 I6_SR2 SilentIntronRegion 0 4.36 8.60 4.66 16.08 7.27 9.32 14.66 12.83 7.24 17.30 1.78 8.19 4.55 2.58 6.88 6.60 5.21 6.08 5.64 7.27 0.00 1.00 4.61 30 ER7a ExonRegion 0 7.39 62.97 11.89 22.41 34.62 32.64 39.70 7.20 14.73 31.91 92.76 151.57 67.56 141.69 63.80 47.96 120.28 57.09 43.72 70.56 26.35 17.53 12.38 31 E7_Da KnownBoundary 0 0.00 2.63 0.00 1.56 3.40 2.56 11.26 0.00 1.68 5.61 9.53 6.30 6.17 2.12 0.00 12.56 0.00 4.02 0.00 2.94 0.00 2.33 3.50 32 E7a_E7b KnownJunction 1 0.00 103.73 11.27 12.49 24.11 30.72 18.95 14.29 11.00 31.27 53.38 150.20 75.97 78.58 29.42 24.87 116.41 38.34 40.94 54.33 21.68 7.10 12.21 33 ER7b ExonRegion 0 0.72 4.48 0.07 3.58 4.28 0.51 9.07 1.53 2.42 4.95 7.50 11.87 12.91 8.07 2.26 6.75 11.25 8.16 6.23 8.43 0.87 2.80 0.83 34 E7_Ab KnownBoundary 0 0.00 0.00 0.00 3.63 16.04 2.73 10.60 1.97 2.55 3.33 7.26 6.30 6.49 2.41 0.00 11.62 17.67 4.23 0.00 9.14 0.00 0.00 0.00 35 ER7c ExonRegion 0 5.00 80.33 10.75 23.63 22.80 34.72 29.22 12.22 20.83 26.74 90.32 131.36 61.18 108.08 44.11 45.46 122.28 59.42 35.91 75.43 24.39 19.27 14.08 36 E7_Db KnownBoundary 0 0.00 14.21 0.00 4.56 0.00 0.00 6.36 0.00 0.00 0.00 0.00 5.40 0.00 4.94 0.00 0.00 4.77 4.93 4.42 5.82 0.00 0.00 0.00 37 E7b_E8a KnownJunction 0 3.04 54.53 11.29 26.00 15.62 41.62 38.91 6.74 28.10 16.41 78.91 149.45 55.19 145.62 40.92 50.33 138.85 54.97 44.90 77.85 15.69 21.86 16.56 38 ER7d ExonRegion 0 0.00 3.02 2.47 2.60 1.32 2.25 8.25 1.90 0.68 1.68 0.48 2.82 4.31 3.02 0.25 1.83 4.25 2.11 1.05 6.44 0.54 0.77 0.36 39 ER8a ExonRegion 0 10.86 53.28 14.85 33.52 37.25 40.78 40.86 14.87 19.84 35.42 104.20 193.35 73.91 160.35 74.13 64.35 122.52 50.63 46.40 59.15 22.64 20.96 19.96 40 E8a_E9a KnownJunction 0 10.52 57.95 12.18 38.19 33.62 61.73 48.00 18.24 24.42 38.12 86.13 210.52 75.00 97.83 42.15 92.45 100.05 41.79 20.24 40.91 20.02 18.37 18.69 41 I8_AR2 ActiveIntronRegion 0 0.58 11.32 1.28 9.63 5.78 5.38 22.69 0.47 6.46 6.36 2.20 6.40 9.38 3.91 3.96 2.23 10.73 7.73 0.80 16.30 2.25 0.43 1.33 42 I8_AR4 ActiveIntronRegion 1 0.00 29.83 7.76 11.58 8.03 0.92 7.94 5.47 8.65 11.47 2.58 34.64 9.38 3.25 0.00 2.97 4.95 2.46 0.00 6.38 0.00 6.25 5.87 43 I8_AR5 ActiveIntronRegion 1 0.00 28.47 8.37 11.58 2.68 1.83 7.94 6.91 8.65 11.47 1.93 34.64 9.38 6.50 0.00 2.97 3.30 1.85 0.00 4.26 0.00 6.25 5.38 44 I8_AR6 ActiveIntronRegion 0 0.00 17.02 13.89 14.84 0.00 2.51 1.18 6.47 4.89 8.88 0.07 19.88 5.21 5.59 2.69 4.95 0.00 3.01 3.19 4.73 0.00 7.18 0.65 45 I8_AR7 ActiveIntronRegion 0 12.70 24.09 10.05 12.30 6.71 1.52 6.56 2.01 1.72 6.39 0.92 14.64 5.21 1.06 1.45 0.45 1.43 2.85 3.37 8.71 0.24 3.80 0.00 46 I8_AR8 ActiveIntronRegion 0 12.26 26.08 6.28 14.69 4.49 6.82 8.69 1.98 1.97 4.32 1.91 5.50 9.82 3.30 2.21 3.16 3.51 0.50 1.53 7.00 0.85 2.21 0.00 47 ER9a ExonRegion 0 8.45 42.49 16.64 32.37 16.99 43.75 26.86 13.32 24.09 33.33 117.30 146.78 78.58 149.26 60.49 83.29 115.36 55.50 36.04 48.90 23.90 15.50 16.63 48 E9_Da NovelBoundary 0 0.00 2.50 4.61 4.13 3.23 11.13 11.92 0.00 3.76 2.61 0.00 6.15 14.61 2.47 0.00 6.84 4.77 9.45 14.40 5.94 0.00 3.12 0.00 49 E9a_E10a KnownJunction 0 31.49 58.41 16.50 29.00 39.64 46.39 19.52 7.76 24.80 39.35 114.77 174.81 171.42 151.63 47.59 52.12 95.18 26.94 40.10 44.93 20.32 13.78 29.36 50 E10_Aa NovelBoundary 0 0.00 2.96 1.57 1.70 16.04 5.79 17.75 2.01 0.00 2.66 2.32 18.91 0.00 4.71 4.45 0.00 4.30 2.45 0.00 6.39 0.00 0.00 0.00 51 E10_Da NovelBoundary 1 0.00 2.83 0.00 2.90 10.53 10.85 12.19 0.00 4.98 3.87 0.00 56.72 26.13 17.01 9.77 3.25 0.00 6.18 9.41 16.87 0.00 2.76 0.00 52 E10a_E11a KnownJunction 0 0.00 67.29 16.35 18.18 27.76 44.35 18.99 9.78 18.61 31.27 98.66 226.72 112.49 202.60 75.16 61.10 130.43 72.83 31.25 45.32 34.41 14.57 21.08 53 ER10a ExonRegion 0 17.21 67.57 18.50 23.39 29.26 44.37 16.96 8.25 25.22 40.99 118.28 208.65 129.51 162.99 68.51 58.39 129.48 61.39 40.79 51.41 26.30 10.08 27.09 54 I10 Intron 0 12.38 22.15 14.59 21.63 12.90 15.50 15.17 10.76 8.43 13.86 10.41 24.36 31.07 18.48 12.29 15.83 15.12 15.56 8.23 15.24 2.31 6.14 4.50 55 I10_SR1 SilentIntronRegion 0 12.59 29.46 9.46 21.17 12.45 15.98 14.42 9.10 10.62 13.99 12.64 35.37 49.62 21.19 13.13 12.43 18.27 14.46 8.45 20.05 2.98 7.73 4.84 56 I10_AR1 ActiveIntronRegion 0 19.26 15.63 18.54 21.66 18.85 10.89 14.99 8.60 8.20 15.16 10.83 22.99 18.13 18.65 9.12 21.01 18.37 22.18 11.85 15.01 2.53 6.96 4.34 57 I10_SR2 SilentIntronRegion 1 5.82 16.27 25.58 19.59 8.03 16.50 19.86 9.72 8.65 12.62 15.46 53.58 9.38 11.37 6.53 27.86 11.97 16.17 3.19 16.22 2.20 4.17 0.00 58 I10_AR2 ActiveIntronRegion 0 11.62 17.68 17.38 28.13 12.05 12.64 19.61 10.81 9.02 10.70 11.10 22.62 24.26 17.54 8.09 16.87 12.68 10.93 6.30 17.15 1.26 5.58 3.05 59 I10_SR3 SilentIntronRegion 0 9.81 19.49 16.73 21.25 11.19 17.22 15.29 12.88 6.74 13.69 8.41 16.29 22.42 16.48 13.40 16.37 11.77 14.53 6.98 11.34 1.83 4.67 4.51 60 E11_Aa NovelBoundary 0 17.11 24.86 32.26 36.43 28.27 25.27 10.07 22.96 13.45 21.49 19.06 11.55 14.28 23.84 15.08 15.64 31.14 31.01 9.32 20.39 3.15 2.57 8.71 61 ER11a ExonRegion 0 20.89 97.41 27.82 31.99 37.19 44.22 49.14 12.30 25.94 33.74 125.61 189.07 94.27 181.99 90.31 105.51 141.56 76.55 59.20 49.64 30.95 24.79 26.26 62 E11a_E12a KnownJunction 0 12.00 65.58 32.17 38.69 28.27 54.63 42.31 20.00 28.10 32.18 105.71 175.11 169.96 147.63 126.83 65.79 132.12 52.73 56.57 68.58 23.78 15.43 31.07 63 ER12a ExonRegion 0 21.29 56.84 32.52 38.13 36.50 53.17 32.97 16.22 23.47 57.49 106.09 154.25 91.16 155.12 86.36 72.49 139.97 81.06 62.24 61.74 30.63 20.27 20.22 64 E12_Da KnownBoundary 1 33.27 47.43 61.17 61.93 35.14 57.69 31.27 18.20 43.98 81.96 159.09 104.88 84.25 136.74 128.81 47.17 175.32 85.68 69.55 89.16 20.26 20.33 7.60 65 ER12b ExonRegion 0 28.77 68.24 36.32 41.15 50.65 54.13 43.98 25.69 22.73 51.38 56.82 92.73 66.64 83.98 79.94 45.60 57.09 22.06 26.33 41.07 8.34 25.41 15.21 66 ER12c ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.44 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00