Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PKD2 Gene 0 78.89 202.73 73.94 112.51 77.38 85.42 84.68 35.38 61.13 70.23 33.63 67.37 93.97 65.84 47.29 40.92 69.49 85.64 50.64 76.83 105.25 256.04 167.87 2 237596 Transcript 0 41.06 90.35 44.08 74.14 52.90 76.30 79.61 26.77 59.57 55.60 34.48 64.27 113.75 75.58 33.34 49.02 85.93 115.54 53.71 81.80 160.71 237.16 213.61 3 ER1a ExonRegion 0 0.52 2.51 1.91 1.79 0.85 3.65 2.46 1.92 3.53 4.72 4.80 1.20 2.17 15.17 3.80 9.00 15.49 22.61 7.20 13.51 49.00 17.42 41.32 4 E1a_E2a KnownJunction 0 7.41 11.84 12.36 13.75 0.00 7.67 11.13 4.23 16.90 20.28 5.37 6.30 12.66 33.26 9.15 18.63 30.11 78.02 35.20 42.19 91.25 133.06 143.67 5 I1 Intron 0 7.17 14.05 10.54 22.89 5.24 3.72 12.77 2.12 3.90 6.12 2.75 10.00 16.08 3.46 4.85 5.93 9.01 13.58 12.10 25.14 3.62 4.72 15.35 6 I1_SR1 SilentIntronRegion 0 3.86 5.58 8.79 7.04 2.35 0.82 8.83 1.64 3.06 3.18 5.70 7.86 10.40 4.37 4.72 6.91 10.80 12.36 10.23 24.44 2.55 2.56 12.98 7 I1_AR1 ActiveIntronRegion 0 8.47 22.37 7.72 9.54 5.35 0.00 17.21 2.59 4.94 6.42 10.05 14.29 19.23 8.12 3.77 8.92 0.66 9.79 15.93 14.68 4.41 7.50 14.98 8 I1_AR2 ActiveIntronRegion 0 4.02 6.26 10.85 7.09 2.94 1.49 13.29 1.78 3.02 3.69 6.70 17.86 16.77 5.80 4.14 10.24 8.07 10.48 15.45 18.11 3.58 4.65 12.72 9 I1_SR2 SilentIntronRegion 0 11.08 12.75 8.73 6.96 3.81 2.25 10.95 1.66 3.69 3.65 1.75 12.46 24.54 3.29 3.99 2.11 7.47 3.45 7.01 18.29 1.28 5.26 9.11 10 I1_AR3 ActiveIntronRegion 0 4.84 14.18 5.92 10.40 1.45 4.49 14.97 1.35 2.31 5.85 1.97 9.13 13.72 2.21 3.22 5.38 11.76 13.20 11.68 30.53 7.01 4.94 16.14 11 I1_SR3 SilentIntronRegion 0 7.80 16.52 10.01 25.76 6.65 3.54 12.50 2.12 2.85 5.06 1.74 8.68 12.65 2.83 5.47 5.39 7.54 15.78 14.03 23.07 4.29 4.15 15.86 12 I1_AR4 ActiveIntronRegion 0 6.88 15.92 14.65 38.65 5.83 6.20 15.26 2.77 6.86 10.79 3.24 10.79 21.70 4.20 4.90 8.07 11.88 16.46 11.67 33.17 3.47 6.45 19.38 13 I1_SR4 SilentIntronRegion 0 3.75 4.51 3.24 14.46 5.93 4.88 12.33 2.28 2.45 9.87 1.71 9.60 5.79 2.29 1.82 0.08 1.46 4.10 7.06 20.81 0.98 3.70 7.81 14 E2_Aa NovelBoundary 0 10.37 56.31 18.66 42.32 8.06 25.38 22.83 7.64 2.89 14.59 0.00 12.60 45.13 2.47 9.64 14.61 12.53 10.99 20.99 26.65 0.00 7.78 20.91 15 ER2a ExonRegion 1 5.44 21.26 17.37 43.11 24.06 52.39 42.66 13.62 26.53 33.31 24.89 42.31 42.05 66.49 19.67 31.60 75.31 82.32 49.93 81.77 169.47 154.31 171.95 16 E2_Da NovelBoundary 0 6.67 19.01 24.42 44.28 19.61 2.38 28.22 13.39 2.84 10.88 2.53 24.16 37.98 5.30 4.45 7.01 8.70 26.32 9.41 45.06 0.00 8.21 24.76 17 E2a_E3a KnownJunction 0 6.74 15.59 15.26 22.11 24.79 38.27 19.92 18.24 30.41 19.80 25.64 30.01 69.96 55.68 4.45 22.90 44.60 108.52 25.32 47.49 180.20 125.41 141.02 18 I2 Intron 0 18.92 56.88 31.41 54.36 14.46 14.44 27.95 8.09 15.99 27.79 3.44 22.16 32.23 4.78 11.60 8.58 10.29 17.44 19.94 44.27 3.66 15.98 15.73 19 I2_SR1 SilentIntronRegion 0 18.93 56.91 31.43 54.39 14.47 14.45 27.96 8.09 15.99 27.80 3.44 22.17 32.24 4.78 11.60 8.59 10.30 17.45 19.95 44.29 3.66 15.98 15.74 20 Ix Intron 0 15.24 45.56 18.80 33.82 12.80 15.19 29.13 7.98 18.58 24.89 5.83 20.24 37.90 7.49 9.29 12.32 13.28 28.10 22.93 47.85 6.82 18.94 33.43 21 Ix_SR1 SilentIntronRegion 0 15.25 45.59 18.82 33.85 12.81 15.21 29.15 7.98 18.60 24.91 5.83 20.26 37.93 7.50 9.29 12.33 13.29 28.13 22.95 47.88 6.83 18.95 33.45 22 I2 Intron 0 10.31 32.09 14.21 27.73 9.81 11.56 20.83 3.23 7.99 12.43 4.54 17.31 26.93 7.42 9.40 9.18 12.48 28.24 19.52 38.77 7.09 15.28 23.14 23 I2_SR1 SilentIntronRegion 0 7.60 24.65 19.65 28.56 5.64 8.22 16.21 2.94 7.66 12.08 4.74 13.37 20.55 6.43 9.74 7.94 11.10 33.58 19.79 37.48 5.90 13.17 25.44 24 I2_AR1 ActiveIntronRegion 0 7.67 42.12 4.90 23.27 8.67 11.77 24.50 2.21 5.79 11.40 3.69 21.56 22.51 4.57 11.71 7.40 11.96 24.72 14.88 41.54 6.73 12.12 17.91 25 I2_SR2 SilentIntronRegion 0 13.26 33.72 14.29 28.79 12.88 13.26 22.65 3.67 8.75 12.89 4.30 18.15 32.76 8.82 8.67 10.12 12.67 24.93 20.43 38.43 7.15 17.52 22.95 26 I2_AR2 ActiveIntronRegion 0 5.12 23.88 14.27 27.71 6.58 12.82 16.29 4.05 9.86 13.33 8.87 16.93 19.64 8.62 7.06 12.89 20.30 43.51 24.78 40.34 14.67 15.61 30.12 27 E3_Aa NovelBoundary 0 10.45 33.28 23.68 46.18 4.07 20.67 17.71 2.55 13.02 11.20 7.95 25.06 40.91 4.89 9.89 27.51 26.09 51.73 23.81 52.09 12.05 19.04 55.49 28 ER3a ExonRegion 0 10.95 39.12 19.52 41.74 24.54 30.01 41.01 16.82 42.51 45.18 31.43 42.52 87.61 80.77 28.02 44.07 94.08 162.44 78.33 82.34 220.83 251.19 238.28 29 E3_Da NovelBoundary 0 18.60 16.18 12.74 18.35 0.00 13.63 32.15 5.59 9.06 12.97 16.37 56.12 26.78 38.91 10.01 37.08 31.51 30.80 8.00 36.50 11.49 17.02 12.98 30 E3a_E4a KnownJunction 1 9.93 39.14 29.15 41.95 33.70 55.42 58.69 18.65 49.62 47.89 28.95 68.57 87.98 66.40 8.90 44.86 75.08 127.68 47.34 71.46 276.08 234.52 253.44 31 I3 Intron 0 4.81 14.05 6.68 10.87 4.77 5.97 16.82 1.26 6.07 5.71 2.41 11.14 16.45 4.25 2.94 5.17 9.42 11.98 6.82 19.25 2.16 6.41 11.52 32 I3_SR1 SilentIntronRegion 0 4.82 14.08 6.69 10.89 4.78 5.98 16.85 1.27 6.08 5.72 2.42 11.16 16.48 4.26 2.94 5.18 9.43 12.00 6.83 19.29 2.17 6.42 11.54 33 E4_Aa NovelBoundary 1 11.11 6.51 13.48 6.93 0.00 8.69 21.37 2.55 4.83 13.51 2.63 0.00 6.33 2.47 0.00 0.00 25.06 27.48 4.80 23.39 14.15 3.06 10.84 34 ER4a ExonRegion 1 14.75 60.27 28.95 45.40 28.52 58.80 55.80 17.42 48.85 57.42 31.65 68.56 108.77 85.57 18.70 65.85 78.27 167.14 44.91 84.56 206.83 213.02 254.96 35 E4_Da NovelBoundary 0 3.48 11.45 15.85 8.76 4.33 2.90 11.79 0.00 2.81 2.44 2.16 6.45 25.65 7.06 0.00 0.00 13.09 35.77 0.00 22.43 8.65 13.47 11.10 36 E4a_E5a KnownJunction 1 12.30 68.41 14.67 46.11 31.32 52.24 50.26 10.51 34.98 46.01 6.90 56.57 65.90 76.81 10.63 48.62 71.62 62.01 16.66 66.03 168.84 152.66 182.16 37 E4a_E6a NovelJunction 0 0.00 0.00 1.63 3.40 3.65 5.68 4.20 0.00 1.19 2.98 0.00 0.00 0.00 2.35 0.00 3.76 0.00 0.00 0.00 0.00 11.55 13.96 12.12 38 ER5a ExonRegion 1 17.37 79.06 32.99 64.32 37.15 54.17 67.23 15.19 39.14 39.89 34.84 61.82 111.98 78.69 21.57 52.10 82.70 114.81 45.09 83.46 196.76 225.20 237.06 39 E5_Da NovelBoundary 1 10.30 58.08 20.11 46.78 15.70 33.11 23.58 9.20 24.91 23.99 7.48 18.31 86.52 36.32 8.90 23.41 23.94 100.65 25.79 71.46 43.43 22.11 20.06 40 E5a_E6a KnownJunction 0 31.49 45.12 35.01 46.88 20.54 47.81 32.81 7.39 26.30 25.52 19.90 19.21 53.73 38.97 14.22 14.70 52.55 66.74 15.72 32.09 163.59 211.26 140.08 41 I5 Intron 0 17.66 42.18 13.15 21.90 17.03 25.62 41.89 5.40 23.17 17.93 13.23 33.03 58.52 28.50 9.64 21.75 34.31 42.78 27.65 49.97 18.55 26.18 28.77 42 I5_SR1 SilentIntronRegion 1 9.64 38.08 5.21 11.14 18.84 15.57 33.21 1.29 13.98 3.47 4.65 17.78 31.13 25.02 3.77 21.75 19.88 30.23 20.33 31.78 16.69 22.21 14.18 43 I5_AR1 ActiveIntronRegion 1 11.72 39.83 11.61 23.23 11.81 16.82 38.94 6.33 18.85 17.16 17.23 18.36 49.67 34.31 7.56 34.74 37.93 77.57 34.06 59.17 32.90 26.60 42.10 44 I5_SR2 SilentIntronRegion 0 11.07 17.99 4.52 4.30 7.41 4.37 10.49 0.00 3.42 3.26 5.65 5.99 25.98 8.25 2.90 10.29 17.27 13.08 24.01 12.60 0.34 15.23 27.33 45 I5_SR3 SilentIntronRegion 0 24.39 31.27 11.14 14.59 13.22 18.25 35.20 3.23 16.16 14.23 11.63 53.16 85.28 17.56 6.53 12.02 26.98 17.21 16.42 40.13 6.92 21.71 19.91 46 I5_AR2 ActiveIntronRegion 0 25.16 46.05 18.23 24.67 21.89 29.10 44.80 5.56 25.61 16.63 11.65 50.01 73.55 30.88 10.24 17.74 39.62 41.09 28.10 50.26 26.48 32.20 29.74 47 I5_SR4 SilentIntronRegion 0 12.60 46.64 19.71 23.20 15.37 30.92 52.61 6.57 29.23 19.84 17.77 29.25 52.26 30.07 14.81 26.32 41.24 47.88 35.68 56.76 16.79 28.93 32.97 48 I5_AR3 ActiveIntronRegion 0 26.93 74.11 26.35 31.19 15.31 23.13 48.47 8.93 33.83 23.32 22.23 31.99 60.45 40.51 14.18 29.39 48.78 40.55 26.37 74.47 22.28 30.56 30.83 49 I5_SR5 SilentIntronRegion 0 17.38 44.31 10.10 22.75 20.20 31.91 42.10 5.43 26.10 21.18 10.85 29.05 50.72 27.32 10.44 17.24 30.18 29.58 24.91 46.41 9.88 23.68 21.93 50 E6_Aa NovelBoundary 0 19.78 60.91 8.16 40.95 56.71 32.25 74.59 9.45 20.51 19.88 19.22 51.17 19.48 32.02 14.09 15.47 39.93 19.98 46.87 44.36 17.98 25.90 7.34 51 ER6a ExonRegion 0 36.23 87.69 28.37 72.16 57.53 87.36 90.62 26.11 59.49 51.82 38.42 79.08 150.70 67.99 24.88 42.18 126.11 69.66 65.53 93.61 109.07 249.02 187.95 52 E6_Da NovelBoundary 0 3.78 18.29 13.81 22.01 24.45 14.20 29.99 0.00 11.00 10.74 4.79 17.41 45.61 6.59 0.00 7.26 32.54 16.21 12.33 34.00 8.09 11.70 0.00 53 E6a_E7a KnownJunction 1 24.15 45.85 17.18 58.77 43.63 57.86 38.29 26.45 36.17 41.21 15.06 28.66 113.95 38.26 17.06 37.60 72.00 42.61 37.08 61.36 65.36 284.80 117.29 54 I6 Intron 0 11.96 30.19 9.16 26.07 11.30 22.30 24.88 6.61 19.92 14.39 6.83 21.50 43.30 15.77 5.54 13.53 20.18 23.06 13.91 29.14 16.30 22.33 19.70 55 I6_SR1 SilentIntronRegion 0 14.27 28.82 8.26 20.15 14.70 19.69 31.55 5.10 14.16 9.07 6.54 19.63 35.54 13.07 4.80 14.45 17.30 13.72 10.41 28.49 9.28 16.56 13.55 56 I6_AR1 ActiveIntronRegion 0 11.74 26.34 6.43 27.49 9.94 18.55 27.78 8.26 22.08 15.85 7.74 29.13 65.74 16.36 6.88 16.04 20.77 16.04 15.44 39.09 10.48 27.69 18.31 57 I6_SR2 SilentIntronRegion 0 8.44 21.75 12.34 21.14 10.78 18.03 21.05 8.95 20.63 17.20 4.79 23.63 45.39 16.15 4.02 10.24 23.12 15.91 8.02 26.81 9.74 27.13 13.20 58 I6_AR2 ActiveIntronRegion 0 9.30 34.83 6.85 20.73 8.92 18.23 20.76 6.11 14.51 13.95 5.20 21.01 42.40 14.63 5.42 11.91 14.58 23.71 18.57 20.90 17.86 19.42 18.92 59 I6_SR3 SilentIntronRegion 0 15.05 38.63 13.07 33.03 13.19 28.92 25.94 6.89 25.14 17.43 7.94 18.95 33.36 19.68 6.90 16.22 25.72 42.95 18.52 31.46 30.01 24.34 31.02 60 I6_AR3 ActiveIntronRegion 0 8.42 22.78 6.22 28.05 7.42 25.12 17.00 4.88 19.94 12.44 7.07 18.40 44.34 12.21 3.60 8.08 16.12 11.56 8.02 22.97 10.54 19.06 14.02 61 E7_Aa NovelBoundary 0 31.64 36.84 10.08 49.38 3.57 35.43 36.17 3.86 20.98 33.47 2.00 24.61 27.76 28.67 22.25 8.12 8.79 10.65 17.13 29.53 8.65 31.41 0.00 62 ER7a ExonRegion 0 38.84 91.22 41.09 89.46 57.53 81.66 85.81 29.76 88.41 69.99 44.62 107.67 163.73 79.21 37.63 49.27 103.41 69.61 61.77 99.84 105.58 324.11 203.75 63 E7a_E8a KnownJunction 1 69.49 149.12 44.85 125.09 117.83 146.45 172.85 30.39 104.69 79.94 50.49 142.55 304.36 115.78 58.97 66.73 110.61 91.57 70.31 132.82 152.47 351.79 216.99 64 ER8a ExonRegion 1 42.28 131.60 39.91 81.92 61.17 100.09 103.49 32.52 76.40 57.56 53.35 120.42 173.33 91.27 28.53 61.14 106.90 114.92 65.95 100.93 177.85 322.09 263.04 65 E8_Da NovelBoundary 0 0.00 6.45 10.26 13.65 0.00 2.90 12.10 0.00 2.69 8.76 2.68 6.30 58.28 4.36 4.45 7.78 4.30 14.43 3.67 33.56 3.15 3.12 8.54 66 E8a_E9a KnownJunction 1 72.16 17.43 25.22 26.10 56.03 19.53 81.79 21.36 37.15 15.37 54.75 81.93 91.39 87.17 15.58 45.97 63.21 37.39 23.53 43.27 139.37 219.09 184.38 67 E8a_E10a NovelJunction 0 17.48 149.51 10.35 69.49 15.70 88.13 6.40 2.05 27.05 37.42 2.47 5.40 18.99 4.94 0.00 3.50 0.00 40.54 7.62 51.07 3.15 0.00 0.00 68 I8 Intron 0 2.96 10.16 7.20 11.66 8.15 3.84 16.93 1.93 4.14 4.36 1.26 9.48 21.02 4.49 5.05 6.98 10.71 7.12 7.32 16.15 3.30 14.05 9.68 69 I8_SR1 SilentIntronRegion 0 2.97 10.18 7.22 11.69 8.17 3.85 16.96 1.93 4.15 4.36 1.26 9.50 21.07 4.49 5.06 6.99 10.74 7.14 7.33 16.18 3.31 14.08 9.69 70 ER9a ExonRegion 1 49.69 38.13 37.75 31.01 56.48 32.25 126.67 26.96 39.87 27.08 47.44 91.06 180.43 77.64 22.47 50.55 90.60 50.64 48.73 56.37 128.09 286.11 200.83 71 E9a_E10a KnownJunction 1 59.12 19.21 36.49 33.83 58.23 40.83 140.48 21.73 38.86 23.72 41.12 89.58 205.67 68.81 9.64 31.27 81.44 38.51 57.32 41.61 73.52 270.16 189.93 72 ER10a ExonRegion 1 51.48 143.56 51.82 86.92 68.52 115.73 102.59 38.24 70.94 60.64 52.03 75.22 164.25 88.13 23.50 53.68 80.72 103.12 66.83 91.53 115.57 299.63 229.98 73 E10a_E11a KnownJunction 0 53.49 142.47 73.33 94.76 68.59 146.05 122.60 50.89 90.45 95.20 27.16 72.92 151.45 79.64 49.82 44.26 73.12 82.95 69.84 129.18 163.15 295.51 259.33 74 ER11a ExonRegion 0 48.97 142.60 86.95 136.02 63.34 123.60 116.56 39.41 84.39 90.85 44.27 96.85 162.15 95.90 46.40 56.71 103.82 159.29 81.54 123.07 177.72 300.25 266.66 75 E11_Da NovelBoundary 0 0.00 55.06 11.41 19.34 13.92 19.76 17.53 7.93 9.46 16.17 2.68 12.60 0.00 6.83 0.00 3.76 3.74 8.21 21.93 14.83 5.19 28.60 3.33 76 E11a_E12a KnownJunction 0 57.94 166.62 75.28 152.39 71.90 109.37 133.46 43.95 86.43 89.42 44.17 106.53 243.82 101.54 42.03 59.30 123.89 185.26 84.52 103.35 207.08 298.15 325.49 77 I11 Intron 0 6.02 25.21 5.57 10.32 14.68 22.36 24.21 1.05 2.62 5.21 1.57 3.62 9.31 3.84 4.47 3.62 1.34 6.91 7.12 6.92 5.82 13.55 5.37 78 I11_AR1 ActiveIntronRegion 0 6.07 25.39 5.61 10.40 14.80 22.54 24.41 1.06 2.64 5.25 1.58 3.63 9.38 3.87 4.51 3.65 1.35 6.97 7.18 6.96 5.87 13.65 5.41 79 E12_Aa NovelBoundary 0 12.15 67.88 13.10 36.03 15.53 50.94 24.91 1.81 19.30 31.05 7.32 12.30 19.64 2.18 8.90 13.07 3.93 12.68 13.08 19.24 16.74 35.70 6.66 80 ER12a ExonRegion 0 52.68 157.24 77.44 126.16 86.10 132.70 110.01 33.41 88.69 80.16 45.13 67.91 139.39 109.99 54.90 79.62 136.76 201.03 91.27 124.29 221.90 254.97 281.37 81 E12a_E13a KnownJunction 0 56.75 147.08 69.48 121.33 72.16 61.10 104.22 38.73 106.31 88.91 47.22 94.08 127.43 77.23 79.86 86.05 112.48 261.03 67.01 106.23 198.68 295.57 276.15 82 ER13a ExonRegion 0 56.19 125.28 57.38 97.61 55.23 85.08 73.03 29.45 74.20 73.71 46.18 73.44 82.53 103.81 65.51 73.45 117.66 209.13 82.41 109.50 215.74 230.17 291.07 83 E13_Da NovelBoundary 0 0.00 2.76 0.00 4.00 4.16 0.00 31.93 5.75 5.73 6.26 2.68 12.00 13.15 2.47 8.90 15.04 17.95 16.87 0.00 9.14 2.35 3.12 0.00 84 E13a_E14a KnownJunction 0 61.57 109.72 52.27 84.44 49.49 110.67 66.24 37.38 76.94 73.06 36.32 18.91 13.64 89.18 40.05 68.96 75.64 173.48 63.63 76.57 203.12 194.84 263.17 85 E14_Aa NovelBoundary 0 31.12 34.20 11.09 18.85 27.25 13.29 22.21 4.48 15.89 13.67 0.00 0.00 0.00 7.42 9.52 7.95 22.35 31.01 21.84 11.89 5.50 6.06 19.80 86 ER14a ExonRegion 0 43.89 78.95 67.55 99.01 49.43 114.98 67.90 33.42 75.71 73.84 31.28 27.50 69.78 88.08 63.20 80.41 96.08 216.65 63.15 103.52 200.98 186.77 255.17 87 E14a_E15a KnownJunction 0 57.79 83.47 66.32 89.10 91.68 133.45 78.74 38.94 96.67 79.99 30.38 12.30 26.13 70.93 75.90 46.57 139.78 189.11 39.62 90.95 222.34 168.64 236.29 88 ER15a ExonRegion 0 141.07 360.53 122.32 176.87 123.82 113.59 111.34 53.26 76.98 99.91 36.30 80.03 91.77 63.32 71.78 35.53 58.04 62.37 51.80 79.21 60.19 328.08 141.86