Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UBE2D3 Gene 0 521.03 634.36 460.37 623.56 508.99 535.15 397.96 367.72 338.02 534.16 973.54 1115.29 789.29 838.40 846.87 723.51 731.97 296.14 351.10 498.52 288.98 802.26 382.03 2 338145 Transcript 0 2.28 4.68 1.81 1.65 3.81 10.27 6.82 1.82 0.96 0.60 2.01 0.97 0.00 2.74 4.55 2.30 4.51 1.24 1.19 3.44 1.54 0.00 0.07 3 357194 Transcript 0 0.00 5.72 1.71 0.00 0.00 0.00 0.00 2.22 1.27 2.69 2.05 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 5.75 3.15 3.12 0.00 4 394803 Transcript 0 31.20 18.84 8.33 7.49 9.06 70.68 30.86 3.57 6.80 14.65 27.07 26.34 4.62 28.30 15.96 54.80 48.09 34.95 14.82 23.97 43.50 27.67 30.06 5 394804 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 6 453744 Transcript 0 0.00 3.35 0.00 0.00 4.33 0.00 0.00 0.00 1.48 0.00 2.42 0.00 0.00 2.47 0.00 4.36 17.67 2.57 4.61 3.13 0.00 0.00 0.00 7 394801 Transcript 1 5.93 13.62 34.12 27.40 0.00 2.90 1.77 31.87 16.52 104.47 183.73 18.76 6.17 102.66 129.92 123.13 221.04 86.93 54.68 121.31 164.33 37.78 55.40 8 321805 Transcript 0 0.21 0.31 1.78 0.27 0.13 3.21 0.99 1.21 2.35 3.96 3.03 3.03 0.00 3.00 11.07 9.37 0.17 2.66 0.32 2.87 3.96 4.06 1.32 9 394798 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 349311 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 343106 Transcript 0 11.02 5.21 8.22 6.11 5.02 13.46 8.72 6.43 6.82 9.40 30.83 13.96 9.14 38.89 24.62 39.37 38.65 35.50 15.44 14.43 50.08 30.61 40.22 12 350435 Transcript 0 0.00 0.30 0.00 0.20 0.00 0.00 0.20 0.00 0.18 0.00 0.29 1.44 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 13 ER1a ExonRegion 0 4.55 2.64 3.61 1.50 7.63 20.54 11.65 1.30 1.91 1.20 1.45 1.95 0.00 3.25 4.64 4.61 5.28 0.00 2.39 4.26 0.11 0.00 0.15 14 ER1b ExonRegion 0 10.07 11.16 12.44 10.97 19.24 31.59 29.15 5.37 6.50 6.94 7.05 10.04 3.09 13.52 12.14 23.02 12.71 7.60 17.06 21.23 7.05 0.35 11.77 15 E1a_E4c KnownJunction 0 0.00 6.71 0.00 1.80 0.00 0.00 1.99 2.34 0.00 0.00 2.58 0.00 0.00 2.24 4.45 0.00 3.74 2.49 0.00 2.62 2.97 0.00 0.00 16 E1a_E6a KnownJunction 0 0.00 5.72 1.71 0.00 0.00 0.00 0.00 2.22 1.27 2.69 2.05 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 5.75 3.15 3.12 0.00 17 ER2a ExonRegion 0 13.73 9.86 2.49 3.39 3.00 40.79 15.13 1.10 1.65 4.94 17.81 15.61 2.42 22.34 20.92 27.83 32.51 13.27 11.39 14.76 24.24 15.97 13.35 18 E2a_E4c KnownJunction 0 48.68 27.82 14.16 11.59 15.11 100.57 46.59 6.04 11.95 24.36 36.32 37.06 6.82 34.26 11.00 81.77 63.67 56.63 18.26 33.17 62.77 39.37 46.78 19 ER2b ExonRegion 0 19.58 12.20 4.60 4.09 5.35 56.85 21.18 1.73 2.47 8.60 27.06 25.98 4.69 30.45 29.01 39.38 50.34 22.17 12.74 27.13 40.77 18.75 14.68 20 ER2c ExonRegion 0 1.68 0.00 1.23 0.00 0.11 1.83 0.00 0.79 1.03 0.76 0.16 1.62 0.00 1.15 0.73 0.00 0.00 4.47 0.00 2.13 3.12 0.17 0.00 21 ER2d ExonRegion 0 29.22 21.69 12.19 9.05 15.85 71.30 34.99 10.18 7.99 23.58 60.70 2.81 2.66 62.89 73.96 78.58 62.18 55.97 47.33 36.95 42.88 18.77 51.18 22 E2_Db KnownBoundary 0 201.37 66.37 22.06 14.05 85.48 252.53 40.36 39.51 7.55 89.56 166.52 0.00 6.66 175.23 300.88 142.10 124.08 150.23 105.60 50.43 218.82 20.57 79.05 23 E2b_E4c KnownJunction 0 0.00 3.35 0.00 0.00 4.33 0.00 0.00 0.00 1.48 0.00 2.42 0.00 0.00 2.47 0.00 4.36 17.67 2.57 4.61 3.13 0.00 0.00 0.00 24 ER2e ExonRegion 1 76.30 16.33 30.07 21.09 29.96 74.48 8.33 25.83 21.00 89.28 201.56 19.23 34.08 183.74 176.29 138.65 149.93 144.49 84.60 68.01 196.87 60.68 81.08 25 E2c_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 26 E2c_E4c KnownJunction 1 5.93 13.62 34.12 27.40 0.00 2.90 1.77 31.87 16.52 104.47 183.73 18.76 6.17 102.66 129.92 123.13 221.04 86.93 54.68 121.31 164.33 37.78 55.40 27 ER3a ExonRegion 0 0.42 0.61 3.55 0.55 0.27 6.42 1.99 2.42 4.69 7.91 4.06 6.06 0.00 6.01 17.70 15.16 0.33 2.96 0.64 5.74 5.07 8.13 2.64 28 ER3b ExonRegion 1 163.19 116.63 81.59 46.54 40.30 234.00 133.55 41.30 45.52 104.25 308.02 15.87 23.94 370.37 430.23 559.13 278.58 152.67 149.25 238.52 108.72 138.38 308.16 29 E3_Ac KnownBoundary 1 563.06 398.48 222.11 148.43 169.86 838.61 398.61 124.58 128.50 243.37 729.92 29.56 73.21 1014.07 836.77 1654.69 866.76 558.54 494.04 438.54 246.00 266.55 877.62 30 ER3c ExonRegion 1 229.50 198.44 127.42 80.55 81.75 396.48 234.18 64.34 68.63 138.09 490.84 17.45 25.41 318.30 285.02 711.54 496.56 351.35 302.70 217.56 155.97 135.99 368.75 31 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 4.45 3.59 0.00 2.36 0.00 0.00 2.84 0.00 0.00 32 E3a_E4c KnownJunction 0 60.01 60.52 51.27 33.30 57.22 102.04 62.05 44.24 31.86 63.82 147.98 65.12 40.42 105.54 110.39 121.93 132.77 161.75 42.64 67.75 84.57 50.40 53.69 33 E4_Aa NovelBoundary 0 13.71 25.92 34.77 41.29 8.57 65.76 37.05 30.07 62.99 48.65 147.09 78.93 21.59 145.80 164.29 213.19 172.42 259.91 140.71 117.16 176.13 157.19 244.91 34 ER4a ExonRegion 0 33.05 13.59 23.43 14.23 15.07 40.39 23.51 19.30 20.47 27.04 92.49 41.87 27.42 116.66 73.86 115.14 115.95 104.66 46.32 41.18 148.05 89.74 120.66 35 E4_Ab KnownBoundary 0 90.16 40.39 32.97 28.50 39.13 102.33 61.61 31.50 29.77 30.19 95.55 45.16 32.47 128.73 71.95 156.63 107.43 84.11 52.33 33.43 186.32 73.42 124.37 36 ER4b ExonRegion 0 88.00 37.85 44.02 31.33 33.77 122.99 55.16 42.73 48.50 51.03 183.93 39.24 45.01 210.53 151.06 250.74 252.80 85.97 84.14 59.92 331.35 175.30 202.83 37 E4_Ac KnownBoundary 0 185.96 58.28 84.92 62.90 31.58 98.35 71.99 80.38 97.45 93.53 259.70 66.92 67.85 305.96 271.09 464.41 303.60 175.14 191.16 97.03 337.68 435.00 425.54 38 ER4c ExonRegion 1 359.11 405.10 397.63 328.31 269.72 423.72 220.37 316.00 342.00 599.92 1768.70 412.39 514.26 1793.11 1522.49 2479.52 1700.60 1321.94 966.77 736.20 1120.23 1073.83 1293.52 39 E4a_E6a KnownJunction 1 353.99 879.25 589.28 528.24 484.04 1065.35 446.18 524.27 587.15 945.11 3149.01 757.60 773.00 1753.67 1475.99 3106.28 2390.55 1716.87 1115.51 1063.01 1521.33 1190.26 1637.69 40 ER5a ExonRegion 0 0.00 0.30 0.00 0.20 0.00 0.00 0.20 0.00 0.18 0.00 0.29 1.44 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 0.00 0.00 41 E6_Aa NovelBoundary 0 71.27 222.53 87.40 240.10 69.10 49.01 98.88 59.48 64.15 40.02 33.96 70.22 26.78 29.31 4.45 44.86 4.77 46.51 27.11 84.75 44.97 52.05 35.34 42 ER6a ExonRegion 0 319.89 529.81 479.33 515.98 442.46 920.94 442.00 405.78 476.12 750.13 2152.83 811.84 841.79 1489.11 1256.88 1440.88 1698.21 943.45 532.50 745.58 1152.68 907.11 722.64 43 E6a_E7a KnownJunction 0 532.61 619.36 438.72 537.13 945.50 1457.57 656.70 365.27 396.70 592.06 1620.04 1144.87 1015.03 1299.61 1391.68 1093.82 1468.72 541.59 384.11 596.67 890.83 820.59 499.12 44 ER7a ExonRegion 0 405.51 585.29 597.18 752.23 801.89 1095.87 599.59 522.21 578.07 856.88 1733.75 1388.95 1294.01 1348.63 1371.20 1012.29 1538.94 687.65 371.19 714.76 889.06 1007.97 484.55 45 E7a_E8a KnownJunction 0 494.09 688.43 657.87 889.33 909.08 1032.02 686.16 635.95 656.45 928.75 1707.27 1678.90 1812.22 1699.87 1565.98 1060.32 1566.34 1059.55 404.81 986.69 844.62 1131.04 604.80 46 ER8a ExonRegion 0 797.25 901.06 1020.55 1319.36 507.43 1191.19 618.63 846.45 912.97 1294.44 3277.16 2437.60 2026.94 2958.83 2534.95 2925.18 2465.01 998.45 1273.04 1521.71 995.77 2492.18 1413.96 47 E8a_E9a KnownJunction 0 606.77 747.56 1066.99 1276.89 349.15 318.74 323.01 773.47 749.62 1074.83 2632.88 934.80 876.24 1510.87 1024.66 1231.13 1970.92 471.45 665.43 996.02 588.24 1168.46 553.07 48 ER9a ExonRegion 0 662.73 893.60 975.23 1187.57 922.40 1076.04 806.64 823.97 775.29 1163.17 2571.63 2410.94 2236.66 2133.73 1784.02 1449.78 2041.32 558.18 599.51 1105.86 579.28 1500.88 668.47 49 E9a_E10a KnownJunction 0 1192.21 1213.60 1447.64 1842.09 1474.19 1342.12 781.72 1096.27 1033.81 1458.71 2513.90 3754.97 3616.32 1992.30 1962.43 1842.68 1959.23 881.42 534.60 1254.82 482.67 2116.47 860.89 50 ER10a ExonRegion 0 993.14 1076.02 1123.90 1520.78 880.98 1168.34 733.83 880.68 881.67 1249.25 2961.53 3679.08 2919.39 2850.55 2261.00 2377.99 2336.02 829.21 1020.06 1374.33 618.45 2587.09 1039.63 51 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.18 0.00 3.25 3.74 0.00 0.00 0.00 0.00 0.00 0.00 52 E10a_E12a KnownJunction 0 524.98 578.65 1097.00 1422.56 487.52 911.41 544.97 822.43 830.34 1313.82 2673.52 2475.36 1639.50 2006.84 2351.57 1883.18 2068.63 436.92 1000.78 1204.65 531.53 3882.39 761.35 53 ER11a ExonRegion 0 1.12 6.64 1.63 2.09 3.44 1.27 3.43 1.13 1.41 1.99 3.67 5.30 1.34 4.54 5.39 9.46 3.50 2.30 1.43 3.13 2.97 3.57 1.32 54 E11b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 ER11b ExonRegion 0 0.00 2.03 1.23 4.09 0.00 0.00 2.65 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 2.97 0.00 1.85 0.00 2.13 2.20 2.08 0.00 56 ER12a ExonRegion 0 677.00 705.05 988.69 1348.40 900.31 943.40 651.13 866.32 841.28 1304.77 2675.36 2891.38 2144.20 1925.78 1497.72 1403.30 1955.30 460.21 665.89 958.65 483.46 1991.70 661.03 57 E12_Da KnownBoundary 0 1706.52 1317.07 1226.95 1891.57 2015.71 1745.76 1353.94 1024.39 1067.26 1537.61 3117.68 4465.15 3968.41 3068.24 2159.47 2619.57 2342.68 664.79 1249.45 1287.23 453.08 2478.43 1270.46 58 ER12b ExonRegion 0 1048.06 929.71 887.55 1279.39 1456.19 1488.08 1068.97 814.88 703.69 1135.34 2287.39 3333.03 2757.78 2140.33 1822.84 1901.54 1612.19 529.11 850.55 896.88 292.69 2388.39 879.06 59 E12_Db KnownBoundary 0 983.06 737.96 528.93 767.10 813.92 1228.38 882.95 480.40 415.71 709.48 1260.00 1989.80 1511.59 1168.94 1078.07 1008.80 795.42 272.06 370.65 539.59 152.96 945.81 511.33 60 ER12c ExonRegion 0 1058.32 1184.62 754.57 1086.44 997.50 891.02 770.29 612.40 507.83 842.07 1270.04 2035.54 1315.30 1109.98 1455.73 747.20 832.71 228.29 415.82 743.43 210.40 1217.79 403.85 61 E12_Dc KnownBoundary 0 467.71 791.90 259.96 432.88 312.82 260.42 286.57 200.98 168.92 293.04 237.74 397.63 197.88 138.74 87.15 182.09 103.69 45.10 145.32 237.45 21.50 364.22 123.69 62 E12_Dd KnownBoundary 0 600.03 739.34 290.79 449.26 428.01 268.88 281.10 159.61 193.05 349.64 208.95 325.46 201.29 149.33 193.21 125.78 135.58 58.37 74.92 262.12 30.46 380.63 106.02 63 ER12d ExonRegion 1 1097.41 1547.55 692.33 1048.74 857.58 708.76 700.38 474.46 453.29 750.65 585.67 1736.12 846.55 630.16 763.03 393.81 320.19 161.68 283.50 604.25 71.62 888.62 265.77 64 ER12e ExonRegion 0 815.48 1226.06 704.82 997.13 771.91 586.15 493.69 489.94 436.04 684.98 721.86 1256.63 598.84 516.93 667.59 387.99 457.60 190.83 334.13 586.74 168.54 739.27 264.16 65 E12_De KnownBoundary 0 488.83 756.64 488.07 800.80 378.10 325.38 297.13 375.54 350.31 499.61 366.62 449.40 245.44 205.72 371.59 236.60 281.35 92.40 168.76 435.28 92.30 815.69 158.26 66 ER12f ExonRegion 0 286.47 713.71 210.82 380.17 247.80 224.19 204.66 180.31 185.13 253.55 211.09 305.13 132.64 128.99 192.02 104.01 129.18 52.50 95.26 240.56 36.61 308.90 73.19 67 ER12g ExonRegion 0 6.35 6.10 0.00 5.45 5.35 1.83 5.30 3.46 2.47 1.15 5.80 0.00 0.00 1.62 2.90 0.00 0.00 1.85 0.00 6.38 0.00 2.08 0.00 68 IG49 Intergenic 0 26.62 58.20 15.56 47.66 34.75 38.34 28.95 23.60 37.51 30.81 15.54 27.20 16.65 12.66 11.75 11.43 14.71 10.62 11.97 30.79 4.31 16.56 7.04 69 IG49_AR3 ActiveIntergenicRegion 0 110.21 245.66 64.05 197.73 142.42 155.42 112.32 95.08 133.52 128.23 65.92 106.79 59.24 52.69 47.91 43.73 54.51 38.38 45.30 112.33 17.06 67.66 23.49 70 IG49_SR3 SilentIntergenicRegion 0 7.05 12.32 3.72 10.30 8.99 12.89 9.13 3.92 25.15 7.06 3.67 9.16 11.44 3.32 1.32 6.16 5.62 5.34 5.54 17.56 0.59 5.30 1.80 71 IG49_AR2 ActiveIntergenicRegion 0 6.49 16.41 5.08 18.15 13.02 17.21 17.77 8.21 31.18 13.62 2.59 21.17 15.15 5.28 3.63 12.40 15.80 10.16 5.11 31.81 2.59 6.10 10.53