Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CEP135 Gene 0 47.66 74.04 26.67 34.46 71.05 43.66 66.18 39.57 33.81 59.96 63.94 93.18 73.41 63.48 30.66 54.64 61.37 51.81 13.97 59.59 9.51 35.87 19.74 2 422247 Transcript 1 16.27 28.79 1.37 2.27 11.12 7.48 18.82 6.57 2.69 6.81 1.86 26.40 7.54 2.77 4.32 8.80 11.97 15.43 5.12 16.81 1.43 4.82 1.27 3 257287 Transcript 0 42.28 87.34 25.40 36.41 70.81 49.69 77.39 36.54 38.53 60.74 84.60 115.82 86.02 75.43 25.70 67.50 81.33 60.05 15.17 72.91 10.73 39.96 22.25 4 IG49_SR1 SilentIntergenicRegion 0 10.88 0.12 1.49 2.26 7.54 1.08 3.13 4.36 1.20 0.53 2.13 0.84 5.31 2.50 1.58 4.61 2.25 0.00 0.00 0.13 0.31 0.49 0.35 5 IG49_AR1 ActiveIntergenicRegion 0 14.91 0.00 0.65 1.52 8.98 1.09 5.82 4.45 1.75 0.44 1.54 0.53 3.32 2.37 1.11 4.21 3.17 0.00 0.00 0.00 0.20 0.31 0.00 6 IG49_AR2 ActiveIntergenicRegion 0 10.52 0.00 2.76 4.43 4.68 0.00 6.25 4.70 2.35 0.57 2.42 0.00 6.45 1.42 0.54 0.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 12.70 17.56 4.30 2.76 13.72 20.78 28.64 6.56 7.04 11.72 23.26 1.33 2.08 11.48 5.53 31.33 33.01 33.79 6.88 22.49 6.09 3.10 6.23 8 E1a_E2a KnownJunction 0 3.19 0.00 4.20 0.00 0.00 0.00 0.00 2.55 8.97 9.16 11.95 6.00 0.00 15.19 0.00 34.86 17.11 30.80 0.00 17.00 2.53 8.76 8.45 9 ER2a ExonRegion 0 11.56 7.93 14.29 10.01 14.90 8.73 20.55 32.85 18.07 35.85 53.06 23.43 23.03 36.41 8.91 53.93 66.69 54.17 7.38 58.15 7.85 18.67 13.85 10 E2a_E3a KnownJunction 0 13.48 18.55 18.98 12.29 22.50 5.68 30.87 32.82 14.15 50.12 50.28 72.32 54.38 31.79 10.38 95.96 52.45 102.72 18.54 42.70 7.66 24.19 15.11 11 ER3a ExonRegion 0 29.69 46.75 27.34 22.89 48.21 42.17 68.67 30.70 28.51 52.14 61.23 87.38 70.50 48.57 10.66 52.81 72.12 55.36 8.42 71.10 9.29 27.30 14.02 12 E3a_E4a KnownJunction 0 39.93 40.78 34.09 27.60 34.72 50.31 53.17 32.94 44.53 67.07 64.44 155.75 91.07 46.74 20.15 89.81 51.15 78.72 21.46 68.07 10.93 29.21 7.68 13 ER4a ExonRegion 0 24.48 34.80 27.32 20.36 32.70 21.87 58.86 33.80 36.74 60.14 73.78 127.18 97.35 74.93 21.03 81.33 71.21 92.06 17.90 72.97 12.07 21.10 30.78 14 E4a_E5a KnownJunction 0 16.74 67.36 26.79 22.34 36.76 23.40 71.19 43.46 42.39 59.45 87.39 180.81 100.97 82.82 32.02 81.77 70.31 103.59 16.00 80.86 28.11 14.76 46.86 15 E5_Aa NovelBoundary 0 0.00 5.59 0.00 0.00 12.39 13.51 31.09 6.08 0.00 2.74 0.00 0.00 6.82 0.00 5.93 0.00 0.00 3.61 0.00 2.94 0.00 0.00 0.00 16 ER5a ExonRegion 0 24.33 43.58 22.45 19.28 46.32 38.70 49.04 32.20 38.55 53.69 79.86 143.88 76.63 89.40 28.28 101.85 80.66 134.72 25.84 59.93 26.34 25.74 26.37 17 E5a_E6a KnownJunction 0 20.82 59.40 15.97 11.52 24.79 34.41 75.74 25.55 23.26 39.94 69.97 57.17 33.28 79.82 15.82 92.28 85.74 75.61 26.92 40.14 35.95 17.39 20.06 18 E6_Aa NovelBoundary 0 13.63 11.18 6.12 4.83 29.46 0.00 10.33 1.85 5.27 5.13 0.00 0.00 6.82 2.47 11.62 8.63 0.00 0.00 0.00 2.36 0.00 0.00 0.00 19 ER6a ExonRegion 0 40.29 54.12 16.00 15.18 27.67 20.80 61.46 33.04 35.54 47.09 69.02 120.36 55.45 88.07 28.40 70.88 69.51 80.87 19.41 53.12 27.90 17.82 28.99 20 E6_Da KnownBoundary 1 50.90 70.32 4.41 11.52 25.38 10.90 31.49 26.45 9.20 22.00 4.47 51.62 31.00 2.47 4.45 16.83 13.18 28.02 7.72 30.30 3.03 8.76 4.35 21 E6a_E7a KnownJunction 0 0.00 31.18 10.73 8.42 48.30 13.17 41.60 17.21 23.09 17.11 47.33 73.52 34.09 61.33 19.66 29.65 42.73 55.38 9.60 30.55 20.70 16.53 31.76 22 ER6b ExonRegion 1 16.27 28.79 1.37 2.27 11.12 7.48 18.82 6.57 2.69 6.81 1.86 26.40 7.54 2.77 4.32 8.80 11.97 15.43 5.12 16.81 1.43 4.82 1.27 23 E6_Db NovelBoundary 0 93.57 101.56 26.23 33.63 18.68 2.90 12.94 25.30 13.80 23.53 15.11 26.56 6.82 18.84 25.47 23.33 4.21 25.37 0.00 20.90 5.56 8.57 7.51 24 I6 Intron 0 25.87 29.97 16.25 15.84 24.98 7.09 20.25 19.14 10.85 21.04 7.12 18.14 19.14 9.61 12.48 16.06 12.27 19.28 6.07 26.52 1.76 7.10 6.49 25 I6_AR1 ActiveIntronRegion 0 26.81 35.14 9.65 10.73 17.51 5.69 18.55 10.80 8.80 15.92 3.41 17.26 16.57 7.93 12.28 8.48 6.65 9.50 3.74 18.03 1.48 7.52 2.96 26 I6_SR1 SilentIntronRegion 0 26.50 30.56 20.33 18.95 29.86 7.40 21.37 25.94 11.04 23.37 10.26 15.16 15.63 10.73 13.53 22.31 17.52 27.84 7.69 30.65 2.34 6.33 8.73 27 I6_AR2 ActiveIntronRegion 1 20.11 10.66 19.05 18.25 26.94 10.33 20.78 14.99 16.78 27.20 4.77 35.05 44.05 10.02 8.39 12.00 6.34 11.67 6.18 35.42 0.00 9.38 7.69 28 E7_Aa NovelBoundary 1 13.04 33.02 18.92 21.54 24.28 7.38 9.49 8.34 17.36 38.68 9.05 55.82 41.39 20.07 8.90 33.41 13.93 17.66 0.00 45.76 0.00 5.33 0.00 29 ER7a ExonRegion 0 14.24 39.22 20.57 16.16 47.08 22.70 42.31 24.81 28.03 39.81 62.95 107.97 71.40 74.72 19.18 50.71 83.42 58.68 13.09 53.04 14.64 27.94 21.81 30 E7_Da NovelBoundary 0 0.00 2.76 17.50 5.53 3.31 5.39 11.53 5.09 6.11 17.35 7.74 26.26 33.76 0.00 8.90 4.36 4.21 3.40 9.60 17.96 0.00 0.00 3.67 31 E7a_E8a KnownJunction 1 28.89 35.78 17.44 14.72 56.62 9.54 37.32 22.88 39.29 39.43 64.23 97.38 71.91 86.23 15.20 36.83 62.46 50.82 4.61 50.11 6.30 24.92 29.28 32 E8_Aa NovelBoundary 0 10.37 13.02 13.84 13.02 12.56 0.00 5.87 7.27 10.47 20.95 5.21 18.46 14.12 6.95 19.16 7.52 15.61 5.06 0.00 9.14 0.00 0.00 0.00 33 ER8a ExonRegion 0 52.15 70.96 32.68 38.21 48.14 36.89 69.33 27.87 35.72 53.24 76.47 130.83 91.37 73.01 24.81 58.33 85.03 47.38 22.02 66.10 9.06 34.42 28.69 34 E8_Da NovelBoundary 1 6.08 52.69 31.28 35.53 38.03 7.04 58.12 17.66 16.87 15.28 6.95 60.92 13.64 7.42 19.78 32.04 21.04 29.31 4.24 49.60 0.00 14.45 0.00 35 E8a_E9a KnownJunction 1 16.74 53.94 7.69 13.68 52.55 28.45 48.76 12.28 17.51 31.21 61.96 88.53 65.26 51.92 5.32 31.02 46.75 14.59 4.52 41.61 5.50 27.07 8.71 36 I8 Intron 0 14.01 22.35 7.21 11.96 19.82 9.91 19.21 9.70 12.29 17.23 7.75 14.26 18.11 5.35 6.50 11.73 9.42 19.37 5.22 29.07 2.67 7.46 5.71 37 I8_SR1 SilentIntronRegion 0 15.04 25.39 8.33 13.52 21.81 11.11 22.57 10.79 15.00 20.32 8.24 14.62 20.86 5.59 6.47 12.45 10.86 21.93 5.96 31.98 3.13 7.79 6.37 38 E9_Aa NovelBoundary 0 38.38 39.86 5.65 21.81 31.41 27.26 69.87 9.41 24.19 27.51 10.21 32.41 6.82 4.94 14.83 8.03 12.62 10.36 3.86 30.10 0.00 6.12 11.27 39 ER9a ExonRegion 0 21.10 68.49 10.71 17.70 37.26 39.09 65.32 25.30 23.60 48.15 75.06 109.16 105.88 62.09 14.07 65.39 90.57 22.65 19.16 67.31 5.54 35.86 20.02 40 E9a_E10a KnownJunction 0 13.93 50.52 20.70 32.73 34.21 27.03 83.51 44.20 33.71 71.67 63.60 117.34 114.28 58.98 24.72 68.44 102.85 25.08 29.37 97.22 12.48 33.86 3.67 41 ER10a ExonRegion 0 23.69 76.15 19.46 39.79 60.60 43.87 57.70 37.73 26.59 65.34 88.83 152.09 119.71 69.87 23.00 65.54 99.22 32.86 18.77 99.37 13.75 32.24 24.32 42 E10a_E11a KnownJunction 0 26.30 63.94 19.13 43.52 39.73 20.67 100.87 37.54 23.61 66.38 75.55 98.28 153.56 89.06 18.79 79.81 90.51 25.74 29.93 96.26 12.05 27.31 22.19 43 E10a_E12a NovelJunction 0 10.08 24.21 5.20 21.88 17.06 2.84 12.06 2.26 9.35 2.90 4.26 17.86 21.91 4.77 18.91 27.43 13.00 4.97 0.00 7.80 2.97 21.13 0.00 44 ER11a ExonRegion 0 21.74 59.61 14.46 25.79 53.54 40.37 58.85 26.10 20.88 49.02 60.43 106.38 90.14 61.62 15.36 49.15 68.08 28.50 10.95 88.97 7.70 28.83 20.69 45 E11a_E12a KnownJunction 1 8.89 37.16 15.40 36.73 47.88 23.74 44.21 35.12 24.33 52.33 45.85 115.24 154.21 68.57 14.59 109.03 24.68 44.98 9.51 91.72 0.00 63.87 36.79 46 ER12a ExonRegion 0 21.07 53.38 19.09 35.48 65.35 35.79 73.84 45.14 39.90 64.95 74.03 127.68 123.96 67.05 21.86 55.67 62.61 32.82 6.85 72.53 3.01 58.95 25.95 47 E12a_E13a KnownJunction 0 47.71 92.29 26.64 53.71 97.62 51.62 124.05 60.17 48.38 84.48 73.07 149.15 117.52 65.69 26.33 62.55 62.09 31.67 0.00 89.42 0.00 83.09 21.85 48 ER13a ExonRegion 0 42.84 77.61 21.35 31.21 71.25 58.35 83.61 34.29 31.36 60.23 64.73 150.60 133.31 77.75 21.09 66.26 64.70 34.02 13.74 66.92 2.58 51.19 24.28 49 E13a_E14a KnownJunction 1 9.71 60.52 17.18 28.97 75.72 66.95 119.42 38.65 40.77 56.28 44.59 137.74 74.67 72.16 4.45 60.58 44.41 22.80 8.38 59.00 3.09 29.88 23.56 50 ER14a ExonRegion 1 29.17 34.52 11.78 24.53 88.54 51.09 103.22 31.44 28.49 47.58 61.23 159.08 88.45 77.83 11.53 55.17 59.50 41.60 9.11 52.95 2.83 20.41 16.34 51 E14a_E15a KnownJunction 1 34.67 55.45 18.48 29.90 111.04 124.59 82.28 48.02 33.10 58.56 53.17 194.91 81.98 69.46 23.73 76.65 73.21 42.74 4.14 38.73 8.28 25.90 15.45 52 ER15a ExonRegion 1 30.62 54.88 12.82 27.85 70.36 68.16 83.70 35.04 38.04 51.13 74.56 150.34 113.89 80.78 13.86 59.79 77.25 41.33 6.43 52.62 11.13 36.50 21.16 53 E15a_E16a KnownJunction 0 22.00 70.91 5.85 43.45 28.10 54.97 52.24 22.96 31.13 46.82 81.13 92.88 80.68 42.26 9.64 48.96 93.13 33.29 3.58 57.21 14.70 38.21 10.24 54 I15_SR2 SilentIntronRegion 0 4.91 8.22 1.47 1.45 2.71 0.81 7.87 2.45 2.08 4.63 4.20 4.71 7.24 2.89 2.27 3.88 6.87 14.16 1.04 19.74 1.25 1.98 1.40 55 ER16a ExonRegion 1 39.43 83.52 24.50 28.36 56.35 55.24 81.06 33.82 34.59 50.20 88.76 103.61 104.72 98.72 18.71 74.56 82.98 54.62 7.61 69.72 18.62 39.77 21.39 56 E16_Da NovelBoundary 0 8.74 48.54 5.44 16.08 24.19 36.57 24.20 12.32 14.55 10.37 7.58 25.36 21.59 17.31 4.45 23.67 11.97 16.87 0.00 33.88 2.41 23.02 7.94 57 E16a_E17a KnownJunction 0 20.52 61.50 3.25 8.32 53.57 80.86 36.26 10.80 26.82 28.07 61.91 77.28 34.58 52.68 13.35 39.14 25.53 41.79 8.47 19.94 2.72 19.53 11.61 58 I16_SR1 SilentIntronRegion 0 6.08 7.30 0.00 0.00 9.61 11.83 11.41 0.00 0.00 0.00 5.55 15.00 3.37 1.90 0.00 6.40 2.37 1.33 0.00 6.11 0.00 7.48 2.11 59 E17_Aa NovelBoundary 1 31.64 20.46 17.09 9.92 28.95 17.15 44.16 5.96 9.40 19.47 6.90 46.37 5.84 4.83 10.26 8.37 13.37 17.91 0.00 18.73 0.00 6.25 0.00 60 ER17a ExonRegion 0 46.28 70.41 19.89 40.26 74.23 61.49 91.09 28.93 33.42 55.27 85.15 93.63 78.25 74.59 19.82 51.77 69.15 63.09 11.59 64.45 5.99 37.38 20.54 61 E17a_E18a KnownJunction 0 48.60 69.13 20.22 42.09 65.62 72.17 129.66 41.32 42.10 76.72 96.45 81.33 48.21 78.99 23.61 45.71 101.54 67.61 12.61 81.11 5.44 52.78 19.21 62 ER18a ExonRegion 0 50.38 61.84 18.36 38.65 72.39 57.90 93.15 44.79 38.47 72.44 108.17 106.77 63.73 72.62 24.30 63.48 75.68 85.66 19.57 73.14 10.27 36.80 20.29 63 E18a_E19a KnownJunction 0 44.16 86.76 17.98 41.05 74.45 63.66 89.78 34.79 34.26 55.07 92.71 111.79 54.05 85.76 20.40 60.84 83.12 71.26 4.80 73.31 11.92 24.06 23.73 64 ER19a ExonRegion 1 44.95 103.00 18.63 33.47 71.87 60.83 70.87 42.78 31.27 70.71 95.25 113.57 74.01 90.62 17.80 58.91 88.54 80.32 22.56 64.50 14.20 39.66 21.55 65 E19a_E20a KnownJunction 1 53.71 98.14 34.21 28.27 124.79 82.45 84.26 40.33 36.83 69.65 123.08 149.60 88.31 114.02 23.12 109.37 137.17 120.46 13.37 75.29 8.96 12.98 26.97 66 ER20a ExonRegion 0 60.92 59.65 36.14 38.06 72.80 57.24 92.51 42.67 48.09 67.79 117.47 130.90 73.98 120.81 29.20 80.78 104.26 106.82 27.89 74.87 16.04 44.82 35.72 67 E20a_E21a KnownJunction 0 69.35 76.24 42.81 40.22 84.55 68.20 109.97 53.03 47.86 82.39 100.03 84.48 55.19 94.71 33.38 124.67 117.91 67.73 31.06 59.00 11.49 69.26 19.04 68 ER21a ExonRegion 0 47.93 73.46 30.57 28.42 70.16 65.41 69.61 35.81 42.58 77.09 124.69 117.41 63.52 87.37 30.23 89.08 122.81 85.94 24.28 74.32 17.04 43.34 24.49 69 E21_Da NovelBoundary 0 2.82 2.50 0.00 1.66 0.00 0.00 7.77 0.00 0.00 0.00 2.68 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 5.94 0.00 70 E21a_E22a KnownJunction 0 70.61 105.31 31.52 35.73 62.22 44.92 49.11 29.49 49.10 69.12 172.15 94.38 122.39 98.30 41.29 138.77 134.92 58.86 42.17 108.34 11.86 54.31 33.21 71 ER22a ExonRegion 0 53.89 69.38 36.61 32.49 81.05 56.38 84.12 37.16 49.92 76.18 114.31 126.38 84.15 69.64 31.98 73.81 102.97 58.56 19.31 91.93 10.39 38.72 20.84 72 E22a_E23a KnownJunction 0 65.57 179.05 59.61 52.01 71.65 51.50 67.30 43.21 72.54 88.73 120.77 144.05 132.95 59.74 35.11 42.13 80.50 38.76 20.52 75.74 17.48 42.01 19.63 73 E22a_E24a NovelJunction 0 3.19 6.71 3.61 0.00 8.66 0.00 4.24 0.00 6.48 3.12 13.11 0.00 6.49 12.01 10.14 8.72 11.97 16.17 0.00 3.26 0.00 2.88 3.16 74 ER23a ExonRegion 0 61.67 194.33 49.49 61.10 97.53 47.07 79.41 44.57 58.27 76.98 118.60 136.60 83.87 69.89 45.88 67.39 92.85 78.73 20.10 89.95 13.67 50.72 24.30 75 E23a_E24a KnownJunction 0 104.98 131.29 67.15 79.01 150.08 27.37 124.94 51.26 85.76 99.15 193.15 130.54 93.66 72.34 78.62 92.80 141.56 135.93 17.32 125.92 18.04 87.01 19.04 76 ER24a ExonRegion 0 61.76 142.45 42.82 55.01 95.10 53.42 101.57 38.78 52.38 67.67 103.18 110.13 64.14 87.28 45.45 76.14 101.48 121.37 17.69 112.99 21.09 38.22 24.81 77 E24a_E25a KnownJunction 1 94.31 221.47 58.51 65.69 102.12 68.77 103.96 57.96 59.75 75.70 60.75 147.80 48.21 78.99 38.45 88.52 76.76 171.53 20.33 118.63 19.58 54.31 36.11 78 ER25a ExonRegion 0 85.66 261.92 26.15 46.37 91.21 40.49 75.52 32.55 41.48 53.23 83.20 96.31 64.01 75.55 37.61 106.48 85.82 123.31 23.00 88.47 18.09 51.16 27.02 79 E25a_E26a KnownJunction 0 34.23 182.73 23.27 55.90 33.45 11.07 26.50 38.49 35.01 46.20 41.12 56.12 60.22 73.81 46.60 49.90 66.76 52.27 8.09 63.09 17.36 25.29 18.18 80 ER26a ExonRegion 0 66.77 75.65 32.29 43.36 93.37 44.02 62.93 52.26 33.15 67.72 34.22 60.91 62.29 50.40 46.06 36.37 27.81 30.58 10.92 40.08 5.57 39.32 15.47 81 IG50 Intergenic 0 1.35 7.85 4.13 9.29 4.53 6.44 18.07 3.69 6.21 3.30 0.13 0.15 0.36 0.06 0.08 0.07 0.04 4.95 5.19 12.58 0.13 0.06 0.34 82 IG50_SR2 SilentIntergenicRegion 0 1.51 8.55 4.42 9.82 5.12 8.52 20.94 3.58 5.34 3.07 0.17 0.18 0.30 0.06 0.07 0.10 0.03 4.79 5.78 12.86 0.15 0.04 0.36 83 IG50_AR3 ActiveIntergenicRegion 0 1.89 7.89 5.84 14.78 4.51 3.46 26.28 4.54 8.06 4.77 0.34 0.00 0.93 0.00 0.00 0.00 0.00 2.85 8.43 17.10 0.00 0.00 1.04 84 IG50_SR3 SilentIntergenicRegion 0 1.57 9.95 5.27 11.91 5.31 5.58 20.07 5.42 10.22 5.04 0.09 0.19 0.50 0.09 0.11 0.00 0.02 7.35 5.75 16.98 0.16 0.12 0.40