Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 THAP6 Gene 0 30.78 42.90 24.64 48.25 45.76 35.16 38.29 22.33 29.47 50.21 32.71 68.20 60.57 39.74 28.33 27.43 33.79 12.72 18.04 40.46 16.57 32.69 23.57 2 380837 Transcript 0 0.00 6.71 0.00 6.39 0.00 0.00 1.99 0.00 0.00 3.01 0.00 7.50 0.00 4.77 0.00 0.00 0.00 0.00 0.00 6.39 0.00 0.00 0.00 3 416533 Transcript 0 11.34 1.50 4.37 20.21 23.43 7.39 7.64 12.73 20.37 6.87 4.51 2.57 11.33 6.18 0.00 4.50 4.14 0.68 7.04 13.55 3.57 4.26 9.22 4 311638 Transcript 0 14.82 17.96 4.85 8.32 8.66 19.25 13.69 9.78 10.76 17.73 38.69 26.11 88.14 16.13 17.80 18.29 31.32 4.15 4.80 16.62 0.00 35.70 7.94 5 ER1a ExonRegion 0 4.23 5.83 2.33 1.73 2.41 1.16 7.72 2.71 5.35 3.10 1.03 0.00 0.00 4.82 5.42 5.55 8.03 1.66 1.27 9.01 2.28 3.06 11.26 6 ER1b ExonRegion 0 80.74 116.26 11.37 34.01 42.64 89.47 72.42 20.70 25.25 26.62 21.34 0.00 4.19 41.36 28.02 34.72 55.41 13.29 21.35 77.64 42.71 39.28 82.29 7 E1_Da NovelBoundary 0 0.00 2.50 0.00 3.63 0.00 0.00 0.00 0.00 3.10 2.74 4.90 0.00 0.00 0.00 0.00 7.09 4.21 8.87 0.00 2.88 0.00 0.00 16.65 8 E1a_E2a KnownJunction 0 240.56 298.04 21.82 71.32 88.88 268.99 140.75 37.75 46.67 55.90 53.12 0.00 13.31 79.46 61.69 69.73 82.94 40.13 52.05 149.44 88.22 56.15 121.22 9 E1a_E3a NovelJunction 0 9.41 0.00 0.00 2.00 20.12 18.91 30.21 4.23 6.19 0.00 4.90 0.00 0.00 7.42 0.00 8.03 14.21 2.57 4.71 23.84 5.44 0.00 8.62 10 ER2a ExonRegion 0 40.17 63.96 15.07 32.57 25.13 57.21 31.68 22.14 32.88 36.99 25.98 16.97 20.07 20.40 12.68 18.16 32.68 12.20 13.57 46.11 36.65 13.48 27.16 11 E2a_E3a KnownJunction 1 6.89 12.96 13.45 29.47 15.62 8.46 5.48 30.48 39.24 48.46 41.69 26.41 12.50 22.37 4.45 4.02 75.08 5.84 9.04 47.94 64.80 19.84 3.59 12 ER3a ExonRegion 0 6.60 31.41 25.82 77.09 52.46 66.98 50.36 47.97 73.94 67.50 61.59 75.56 80.41 56.98 23.75 45.22 55.54 35.36 28.82 75.94 44.47 53.24 53.13 13 E3a_E4a KnownJunction 0 55.49 146.22 20.58 63.63 30.81 45.20 50.26 49.45 71.50 48.06 62.28 111.19 99.34 39.14 14.59 28.54 32.63 10.36 8.94 54.65 28.54 49.23 15.79 14 E3a_E5a KnownJunction 0 0.00 6.71 0.00 6.39 0.00 0.00 1.99 0.00 0.00 3.01 0.00 7.50 0.00 4.77 0.00 0.00 0.00 0.00 0.00 6.39 0.00 0.00 0.00 15 ER4a ExonRegion 0 45.62 58.70 16.91 48.52 44.19 48.76 42.03 25.35 50.92 50.57 52.77 97.07 130.28 51.13 23.14 29.67 49.49 14.20 14.13 50.44 12.51 43.51 19.09 16 E4_Da NovelBoundary 0 6.96 2.63 5.09 7.62 0.00 0.00 6.40 2.30 9.92 2.79 13.00 26.11 13.47 0.00 0.00 7.35 4.77 3.94 0.00 17.07 2.41 0.00 0.00 17 E4a_E5a KnownJunction 0 14.82 17.96 4.85 8.32 8.66 19.25 13.69 9.78 10.76 17.73 38.69 26.11 88.14 16.13 17.80 18.29 31.32 4.15 4.80 16.62 0.00 35.70 7.94 18 E4a_E6a KnownJunction 0 9.48 0.00 6.39 29.50 32.00 8.46 6.14 17.79 28.79 9.99 2.68 0.00 6.82 4.36 0.00 0.00 3.93 0.00 9.60 7.93 3.15 3.12 3.84 19 I4 Intron 0 5.15 7.09 3.40 13.87 8.31 9.11 13.59 7.26 12.31 9.39 5.26 24.80 21.49 6.81 3.88 3.97 5.52 2.90 1.37 22.25 3.16 5.37 4.07 20 I4_AR1 ActiveIntronRegion 0 3.43 6.58 2.32 10.10 6.50 3.18 9.65 3.57 7.88 4.74 2.68 20.97 13.69 6.28 2.94 4.47 1.91 0.43 1.11 15.75 0.51 1.93 2.71 21 I4_SR1 SilentIntronRegion 0 6.39 7.47 4.17 16.57 9.61 13.32 16.42 9.88 15.47 12.69 7.10 27.58 27.06 7.20 4.55 3.64 8.08 4.66 1.56 26.91 5.04 7.82 5.03 22 E5_Aa NovelBoundary 0 10.45 3.03 4.08 17.41 4.33 7.89 9.41 6.78 15.39 7.74 4.69 31.66 20.45 9.65 4.45 3.16 0.00 1.78 11.77 20.07 0.00 5.02 8.71 23 ER5a ExonRegion 0 31.39 42.48 26.12 48.31 47.21 31.87 37.96 21.02 26.16 51.32 31.22 71.32 60.15 39.76 30.23 26.95 32.28 11.49 18.03 37.68 14.21 32.28 21.06 24 E5_Da NovelBoundary 0 16.45 9.87 1.57 10.75 14.18 0.00 13.91 10.10 3.21 4.51 4.79 12.15 6.33 7.71 0.00 3.50 0.00 4.64 3.48 23.46 2.35 5.82 4.35 25 I5 Intron 0 3.32 7.91 3.47 10.59 8.99 6.93 10.09 5.29 9.48 5.59 3.29 5.72 11.55 3.68 1.69 3.48 3.36 4.11 4.72 18.10 4.38 4.19 5.58 26 I5_SR2 SilentIntronRegion 0 4.09 10.27 3.65 12.18 11.42 9.32 12.20 6.81 11.29 7.59 4.00 6.18 13.04 4.13 2.31 4.63 3.47 5.58 5.51 21.13 5.30 5.44 6.77 27 E6_Aa NovelBoundary 0 10.37 6.64 16.17 13.78 16.64 19.31 7.20 8.54 15.39 1.67 2.26 0.00 13.31 11.24 0.00 7.18 17.39 7.50 0.00 18.28 7.91 0.00 8.62 28 ER6a ExonRegion 0 13.19 3.01 2.34 10.92 14.85 6.33 9.13 7.67 11.96 3.74 6.33 5.15 15.84 8.00 0.00 9.00 4.35 1.37 4.48 19.18 3.99 5.41 14.60 29 IG29 Intergenic 0 12.65 17.79 11.28 40.17 25.08 17.79 16.98 13.84 19.82 14.36 3.91 4.38 6.63 3.52 4.09 3.95 3.52 7.85 7.40 15.97 5.48 6.69 7.20 30 IG29_AR2 ActiveIntergenicRegion 0 8.28 10.73 2.82 16.86 9.18 2.81 5.30 2.62 5.11 2.45 0.00 4.68 6.00 0.86 2.02 2.62 3.06 1.65 0.66 10.10 0.23 3.43 2.59 31 IG29_AR3 ActiveIntergenicRegion 0 11.20 20.20 11.37 60.70 42.01 39.51 36.04 25.16 38.82 21.04 9.95 19.07 22.95 9.44 3.37 11.49 5.72 15.34 18.19 29.60 9.78 12.96 16.36 32 IG29_SR3 SilentIntergenicRegion 0 21.39 33.52 15.34 86.04 68.94 42.03 45.57 31.50 45.48 29.24 7.65 9.16 14.89 7.51 6.66 8.53 6.50 12.98 16.55 34.38 9.75 18.30 14.68 33 IG29_SR4 SilentIntergenicRegion 0 27.56 20.36 7.93 18.37 29.79 29.89 26.92 13.97 17.97 14.23 6.55 6.26 9.25 7.42 3.35 8.05 8.71 5.24 15.52 17.58 6.81 17.19 14.97 34 IG29_AR5 ActiveIntergenicRegion 0 36.26 57.31 38.45 112.92 66.52 49.41 42.72 41.14 54.60 45.98 10.68 6.32 8.99 8.73 12.99 8.33 8.19 25.97 19.38 40.88 15.79 13.76 18.46 35 IG29_SR5 SilentIntergenicRegion 0 3.17 4.07 13.48 17.04 0.00 0.00 12.58 6.91 7.41 4.59 2.90 0.00 9.38 3.25 4.35 0.00 3.30 3.70 1.59 0.00 0.00 2.08 1.47 36 IG29_AR6 ActiveIntergenicRegion 0 38.60 28.94 42.32 98.83 44.16 27.05 19.41 28.27 32.58 24.72 6.25 2.67 5.70 6.23 14.89 5.20 5.74 12.80 16.71 28.71 9.35 11.44 8.78