Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AASDH Gene 0 38.76 67.55 27.74 52.64 52.47 53.05 35.51 24.19 40.73 31.17 62.66 73.70 80.66 50.26 38.53 42.48 61.81 32.18 38.22 53.82 27.06 29.96 29.71 2 451613 Transcript 0 0.00 6.51 2.72 6.03 0.00 2.21 1.90 0.00 7.67 0.00 0.00 0.00 0.00 0.00 10.38 0.00 0.00 1.91 8.85 0.00 0.00 0.00 0.00 3 434343 Transcript 0 7.48 32.95 9.40 7.79 0.00 36.06 14.18 2.09 5.56 6.47 7.00 0.00 0.00 4.83 22.25 8.12 0.00 6.76 4.05 8.50 0.00 3.12 0.00 4 205214 Transcript 0 40.95 58.53 23.78 39.84 30.17 26.83 25.33 16.67 15.86 13.15 33.82 32.96 41.20 16.10 24.32 30.09 39.60 11.61 16.59 19.07 8.51 16.17 12.96 5 IG4 Intergenic 0 5.04 6.51 3.22 8.11 6.44 6.31 5.44 3.01 7.31 6.19 3.92 13.65 10.65 8.12 2.91 6.43 8.81 5.75 6.54 10.99 0.92 1.70 1.88 6 IG4_AR5 ActiveIntergenicRegion 0 6.28 11.25 5.78 10.23 9.17 5.53 5.72 4.91 6.28 4.90 4.71 9.22 16.89 6.78 3.37 6.81 11.56 3.86 6.94 7.81 0.63 3.38 1.08 7 IG4_SR3 SilentIntergenicRegion 0 8.03 7.30 2.29 9.15 5.20 10.29 6.25 2.24 9.56 7.84 4.15 19.59 10.77 9.13 3.43 6.38 8.94 6.60 7.50 14.06 0.49 1.96 1.83 8 IG4_AR4 ActiveIntergenicRegion 0 2.12 3.56 2.11 4.67 3.73 7.06 2.80 1.62 9.18 6.78 5.34 10.98 8.51 11.36 3.41 10.76 12.23 8.77 8.71 14.15 1.70 1.76 3.31 9 IG4_SR2 SilentIntergenicRegion 0 1.20 6.45 3.49 7.69 5.38 3.08 6.55 0.85 6.80 6.24 5.75 36.13 11.29 18.19 0.64 6.13 5.09 7.21 8.81 19.25 4.87 1.03 0.00 10 IG4_AR3 ActiveIntergenicRegion 0 0.00 8.78 5.16 4.95 3.24 0.00 11.36 2.09 8.06 7.79 2.95 34.18 21.48 15.90 2.60 13.61 9.90 13.62 5.03 6.83 0.23 1.21 0.46 11 ER1a ExonRegion 1 29.50 51.81 2.78 12.86 18.77 44.23 18.97 2.12 12.79 9.11 30.70 4.39 3.85 27.25 19.57 73.37 30.05 56.95 57.05 28.52 24.90 31.19 50.67 12 E1_Ab KnownBoundary 1 108.54 175.30 9.73 35.76 62.73 132.54 66.55 8.26 32.81 23.58 99.08 6.30 13.15 59.45 34.24 230.97 76.86 142.27 155.58 96.71 73.64 80.28 129.07 13 ER1b ExonRegion 1 44.79 98.08 11.73 26.03 31.41 54.26 32.56 11.59 27.15 25.72 72.34 7.67 14.84 25.53 20.21 77.08 51.84 89.15 75.82 58.35 33.60 26.78 46.17 14 E1_Da NovelBoundary 0 3.41 11.45 11.27 11.95 0.00 7.21 2.03 0.00 3.15 7.25 4.69 0.00 0.00 0.00 0.00 6.84 0.00 20.44 3.95 5.69 2.90 0.00 3.67 15 E1a_E2a KnownJunction 1 3.11 11.77 13.28 15.02 4.33 5.51 8.79 9.61 19.70 19.53 9.74 5.40 6.01 0.00 8.90 4.36 44.04 20.93 0.00 23.20 13.71 0.00 7.00 16 ER2a ExonRegion 0 8.99 37.43 13.93 35.03 20.39 25.83 18.86 14.44 32.30 24.73 61.45 42.24 46.23 36.73 20.87 45.90 56.69 49.68 41.84 58.46 26.82 23.95 25.93 17 E2a_E3a KnownJunction 1 31.12 62.95 6.39 35.49 37.01 45.60 32.06 17.58 26.01 22.43 39.17 56.12 55.35 42.62 14.71 16.15 57.69 11.36 16.47 43.53 19.71 17.08 7.26 18 E2a_E4a NovelJunction 0 0.00 20.59 0.00 4.89 0.00 5.34 0.00 0.00 2.55 4.32 5.37 0.00 0.00 0.00 4.45 0.00 0.00 1.82 0.00 5.62 0.00 0.00 0.00 19 E3_Aa NovelBoundary 0 13.63 5.66 13.16 8.56 3.65 0.00 10.16 5.75 9.72 2.79 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 7.72 0.00 0.00 3.06 0.00 20 ER3a ExonRegion 0 25.19 61.44 7.25 29.68 26.96 18.14 29.03 17.50 26.47 22.06 42.04 58.50 88.30 45.48 20.16 22.75 46.29 9.77 19.67 54.42 17.14 23.92 16.67 21 E3_Da NovelBoundary 0 10.15 20.46 2.99 20.44 13.33 14.48 19.34 6.94 2.98 10.18 0.00 12.60 0.00 0.00 10.75 0.00 4.77 0.00 4.05 0.00 3.09 8.57 0.00 22 E3a_E4a KnownJunction 1 23.49 52.95 8.22 27.27 34.55 35.26 26.06 26.41 37.47 21.36 42.17 107.89 200.47 55.09 4.94 44.18 41.80 18.07 22.68 34.00 11.00 19.90 27.23 23 E4_Aa NovelBoundary 0 3.04 8.88 3.37 8.36 20.88 10.85 12.45 6.70 6.05 9.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 4.01 24 ER4a ExonRegion 0 22.81 72.32 25.84 45.64 46.68 46.60 33.74 22.39 40.29 26.09 68.27 127.64 157.83 46.86 27.04 36.70 55.85 28.36 33.90 52.58 15.28 32.00 27.75 25 E4a_E5a KnownJunction 1 17.93 65.25 44.20 56.07 50.34 31.86 51.67 29.00 62.47 43.14 117.35 232.58 110.54 89.82 23.49 72.20 82.09 34.28 37.93 77.53 29.59 45.93 57.45 26 E4a_E6a NovelJunction 0 0.00 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 1.45 2.00 0.00 0.00 9.30 0.00 3.59 0.00 2.03 0.00 0.00 0.00 3.12 0.00 27 ER5a ExonRegion 0 22.90 75.62 32.67 43.16 47.01 49.29 34.62 23.65 49.02 31.40 73.76 139.80 108.38 60.42 35.97 64.00 68.89 43.29 48.41 70.28 40.10 26.85 47.63 28 E5a_E6a KnownJunction 0 16.82 79.85 18.51 37.32 71.31 61.84 17.58 32.82 44.59 27.72 67.75 62.42 54.54 62.57 40.92 53.23 84.06 39.13 9.13 70.82 64.19 6.06 29.79 29 ER6a ExonRegion 0 20.94 48.60 14.60 36.58 42.96 45.60 31.46 29.26 44.44 26.66 67.81 70.34 94.21 70.38 33.74 47.00 71.60 37.54 42.83 61.88 35.84 24.46 34.34 30 E6_Da NovelBoundary 0 0.00 6.45 8.69 10.95 4.33 4.88 4.02 3.82 8.07 2.50 0.00 6.30 8.28 16.30 10.38 0.00 4.68 4.68 0.00 8.82 2.47 14.27 0.00 31 E6a_E7a KnownJunction 1 21.26 50.52 6.80 31.73 20.46 59.06 20.98 17.99 51.50 19.34 46.12 55.22 69.96 70.46 20.89 16.83 61.80 31.79 48.57 44.29 18.16 30.19 31.93 32 I6_AR1 ActiveIntronRegion 0 2.45 9.46 7.06 8.66 5.71 7.82 6.68 4.99 7.80 4.96 2.25 17.19 13.25 5.80 0.96 5.76 4.44 1.78 3.09 7.01 0.00 8.08 2.28 33 E7_Aa NovelBoundary 0 14.08 0.00 9.55 1.56 34.80 7.95 9.72 2.55 8.45 4.11 10.53 31.36 0.00 2.47 4.45 0.00 13.93 0.00 8.75 8.12 3.15 12.49 0.00 34 ER7a ExonRegion 0 16.75 41.13 9.79 23.33 30.21 47.28 25.43 14.13 35.95 22.25 59.49 69.92 82.19 56.12 29.15 47.94 76.41 34.00 29.65 51.26 25.89 22.06 36.75 35 E7_Da NovelBoundary 0 11.34 15.98 8.84 2.83 0.00 18.97 18.59 13.55 9.52 7.79 14.16 6.30 13.47 11.95 13.97 4.19 18.61 4.35 13.37 14.06 3.15 11.14 0.00 36 E7a_E8a KnownJunction 1 13.11 23.29 7.10 18.48 11.80 74.28 27.43 11.05 34.90 24.93 65.17 81.63 66.72 81.94 14.34 50.33 72.37 43.07 28.52 68.26 21.62 31.05 51.90 37 I7 Intron 1 4.01 7.71 3.66 6.20 12.41 9.28 8.09 7.87 9.31 4.86 1.43 18.36 28.33 4.97 3.20 3.76 3.83 1.65 3.69 15.03 0.46 10.31 1.24 38 I7_AR1 ActiveIntronRegion 0 3.23 8.00 3.84 7.33 13.18 8.81 6.04 8.79 8.66 5.24 1.26 19.71 23.84 3.66 2.67 2.42 3.24 1.20 5.18 17.01 0.00 9.70 0.96 39 I7_SR1 SilentIntronRegion 1 5.51 7.28 3.36 4.19 11.11 10.24 11.98 6.27 10.63 4.21 1.74 16.06 36.99 7.47 4.22 6.28 4.96 2.50 0.98 11.53 1.33 11.58 1.77 40 E8_Aa NovelBoundary 0 3.70 3.35 10.14 8.46 19.95 10.39 8.39 8.17 15.22 14.85 15.11 12.45 15.10 9.54 0.00 3.85 0.00 2.57 4.52 17.07 11.74 6.25 8.62 41 ER8a ExonRegion 0 14.11 41.55 7.95 33.87 39.69 52.71 33.26 16.43 36.62 27.13 70.60 72.67 78.13 65.38 28.36 40.84 78.15 36.02 25.41 47.63 39.62 25.57 37.16 42 E8_Da NovelBoundary 0 7.56 5.79 4.38 9.06 20.20 0.00 19.56 8.46 16.58 8.46 5.00 19.06 21.91 0.00 0.00 4.19 4.11 6.67 4.42 5.43 2.59 5.08 11.69 43 E8a_E9a KnownJunction 0 11.26 44.93 12.57 38.56 26.91 53.09 37.76 16.06 22.45 35.27 67.28 41.71 41.56 70.16 27.94 27.86 68.35 41.62 4.05 48.19 29.10 20.51 56.77 44 I8 Intron 0 3.42 9.39 1.05 4.45 8.64 6.35 6.11 3.57 6.16 2.17 4.68 18.57 15.18 4.13 1.42 3.77 2.67 1.81 6.62 4.17 0.50 4.33 3.73 45 I8_SR1 SilentIntronRegion 0 3.43 9.43 1.06 4.47 8.68 6.38 6.14 3.58 6.19 2.18 4.70 18.66 15.24 4.15 1.42 3.79 2.68 1.82 6.65 4.19 0.51 4.35 3.74 46 E9_Aa NovelBoundary 0 6.15 9.93 6.15 5.29 15.96 19.42 9.41 8.26 5.21 2.66 18.11 0.00 6.82 12.13 4.45 11.11 12.16 9.04 0.00 9.14 5.81 5.88 15.54 47 ER9a ExonRegion 0 22.79 44.66 18.79 38.13 43.98 58.23 35.75 20.13 33.16 34.99 72.46 63.08 77.57 60.16 28.52 46.54 58.99 31.37 25.52 51.36 21.88 32.06 31.41 48 E9a_E10a KnownJunction 1 20.82 46.37 11.59 35.56 28.27 57.64 41.65 8.71 32.96 28.74 60.12 57.32 21.91 53.68 0.00 20.25 30.39 12.27 13.27 39.76 11.86 28.17 26.97 49 E9a_E11a NovelJunction 0 0.00 3.16 0.00 1.86 0.00 0.00 0.00 0.00 1.79 2.20 7.42 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 50 ER10a ExonRegion 0 29.69 53.71 19.10 40.25 74.97 63.52 46.56 19.92 32.23 38.20 66.87 103.50 88.34 46.85 30.79 42.22 48.94 18.62 27.76 45.32 19.99 32.28 21.44 51 E10_Da NovelBoundary 0 0.00 30.92 3.34 5.79 6.79 0.00 7.29 0.00 4.92 4.06 0.00 12.30 13.64 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 52 E10a_E11a KnownJunction 0 14.37 39.80 20.52 32.16 47.37 64.91 30.83 17.87 32.03 35.00 56.54 69.32 109.25 36.61 29.79 23.84 47.69 13.14 25.69 41.55 30.52 40.05 37.90 53 ER11a ExonRegion 0 37.74 57.83 28.55 54.40 59.40 61.14 42.91 23.47 43.05 37.22 71.90 90.73 84.50 62.50 39.12 43.05 78.33 34.44 51.78 57.31 36.15 36.90 31.17 54 E11_Da NovelBoundary 0 3.33 8.62 7.95 7.72 18.51 26.46 27.12 10.35 18.92 14.08 11.58 0.00 6.82 20.72 8.90 4.27 0.00 7.96 25.13 20.20 3.09 5.45 11.52 55 E11a_E12a KnownJunction 0 30.89 36.44 18.80 30.13 11.80 24.53 31.80 14.83 4.57 13.89 36.64 26.11 48.05 11.54 13.35 38.54 48.99 11.90 16.75 15.98 8.65 17.21 15.02 56 E11a_E13a KnownJunction 0 7.48 32.95 9.40 7.79 0.00 36.06 14.18 2.09 5.56 6.47 7.00 0.00 0.00 4.83 22.25 8.12 0.00 6.76 4.05 8.50 0.00 3.12 0.00 57 E11a_E15a KnownJunction 0 0.00 6.51 2.72 6.03 0.00 2.21 1.90 0.00 7.67 0.00 0.00 0.00 0.00 0.00 10.38 0.00 0.00 1.91 8.85 0.00 0.00 0.00 0.00 58 I11 Intron 0 13.97 26.05 8.99 18.48 17.24 24.49 16.29 8.45 14.45 10.08 13.59 14.83 17.17 12.64 9.78 10.21 7.48 11.06 8.46 21.02 4.82 13.02 10.09 59 I11_AR1 ActiveIntronRegion 0 5.04 15.21 8.07 7.60 22.74 23.03 13.50 0.88 7.51 8.14 7.89 21.36 14.41 12.96 14.68 6.06 3.37 5.01 11.91 16.64 1.50 17.00 8.99 60 I11_SR1 SilentIntronRegion 0 9.66 18.55 5.70 13.16 10.92 18.48 9.21 9.58 10.38 6.97 16.00 10.67 12.75 11.26 5.98 9.27 9.11 10.04 9.56 20.17 3.96 11.50 9.51 61 I11_AR2 ActiveIntronRegion 0 18.35 32.72 11.12 23.88 19.85 28.35 21.03 9.37 18.28 12.32 13.39 15.96 20.35 13.41 11.00 11.64 7.39 12.93 7.13 22.48 6.01 13.12 10.68 62 E12_Aa NovelBoundary 0 27.78 55.19 27.20 42.42 35.82 51.62 15.77 14.50 31.92 15.93 20.27 18.16 12.82 11.54 30.41 12.05 42.26 4.15 3.48 47.11 9.20 7.90 10.93 63 ER12a ExonRegion 0 58.76 96.86 46.72 70.26 69.67 61.37 35.21 27.73 39.64 23.90 56.21 65.63 50.85 40.55 52.05 40.88 48.31 26.00 31.89 50.30 13.29 28.11 22.22 64 E12_Da NovelBoundary 0 35.27 36.57 26.82 26.97 15.79 7.89 19.48 2.55 23.12 19.45 9.58 19.81 19.48 24.07 5.19 8.12 8.88 27.94 17.13 40.65 11.37 3.12 3.24 65 E12a_E13a KnownJunction 0 74.16 90.64 27.97 58.07 39.22 21.41 34.31 22.39 19.21 14.83 42.43 37.21 65.90 12.30 31.89 40.93 58.91 8.54 17.69 7.86 12.11 19.35 14.60 66 I12 Intron 0 16.50 40.00 13.72 22.37 20.48 19.28 15.53 7.74 18.56 16.01 4.29 17.74 21.73 8.20 8.57 4.89 3.31 4.61 2.28 17.05 2.20 7.60 4.42 67 I12_AR2 ActiveIntronRegion 0 10.04 25.35 2.95 11.34 11.73 7.57 16.73 3.86 7.23 9.69 1.36 3.68 8.28 2.56 9.94 3.10 4.57 0.43 0.00 9.46 0.00 2.17 0.00 68 I12_SR1 SilentIntronRegion 0 17.35 41.97 14.81 23.68 21.58 20.57 15.80 8.20 19.81 16.83 4.60 19.16 23.20 8.79 8.67 5.13 3.29 5.02 2.50 17.99 2.41 8.17 4.84 69 E13_Aa NovelBoundary 0 25.04 104.39 4.52 14.55 31.41 36.23 13.12 11.67 20.54 3.89 10.69 11.70 13.64 2.12 14.96 4.19 8.42 1.95 14.40 15.47 3.15 13.23 0.00 70 ER13a ExonRegion 1 90.58 155.10 52.86 82.97 77.55 86.68 61.78 26.38 40.41 36.47 53.70 60.75 84.31 32.40 69.54 46.90 49.49 16.30 41.36 49.78 15.80 32.61 31.25 71 E13_Da NovelBoundary 0 10.30 69.99 24.07 45.88 63.24 23.11 20.18 16.51 33.74 24.20 13.69 12.00 26.30 12.30 17.80 3.59 3.55 6.26 7.81 22.95 0.00 11.51 4.10 72 E13a_E14a KnownJunction 0 40.90 70.32 68.21 115.74 31.58 28.00 21.60 35.24 37.47 30.70 28.06 49.37 47.89 41.79 61.56 23.75 43.85 6.30 33.04 36.62 9.33 21.98 7.68 73 I13 Intron 0 20.31 54.60 12.40 17.30 30.58 30.85 20.56 11.94 21.04 19.35 6.46 10.13 15.20 8.21 6.86 6.41 8.19 7.74 8.24 15.14 2.14 7.41 4.43 74 I13_SR1 SilentIntronRegion 0 20.40 54.83 12.46 17.37 30.71 30.98 20.64 11.99 21.12 19.43 6.48 10.18 15.27 8.24 6.89 6.44 8.22 7.77 8.28 15.21 2.15 7.44 4.45 75 E14_Aa NovelBoundary 0 31.56 29.60 18.75 37.42 15.45 24.82 21.11 23.08 39.79 28.53 11.85 18.31 6.82 4.94 15.58 3.67 22.44 5.39 15.44 26.53 0.00 5.69 7.94 76 ER14a ExonRegion 0 85.82 86.24 59.16 104.10 67.30 76.52 36.87 39.32 47.58 34.35 55.60 67.60 71.06 37.17 56.22 38.46 63.12 12.07 34.99 46.29 19.13 28.29 23.36 77 E14_Da NovelBoundary 0 14.97 14.14 8.22 15.02 7.81 21.64 9.49 9.90 13.77 14.18 5.11 11.25 0.00 9.65 4.45 0.00 8.51 3.52 8.66 23.52 0.00 8.08 0.00 78 E14a_E15a KnownJunction 1 140.25 177.86 53.81 123.99 119.95 103.52 54.94 45.14 55.32 27.72 54.22 67.67 75.16 37.61 89.87 34.01 67.88 18.12 41.22 52.09 25.21 27.98 37.90 79 I14 Intron 0 17.39 46.91 11.98 15.62 19.34 10.96 10.18 8.12 14.88 13.02 3.68 5.82 6.91 4.04 7.14 1.37 2.17 4.23 5.23 13.28 0.43 8.76 2.12 80 I14_SR1 SilentIntronRegion 0 13.18 63.43 8.56 10.76 12.60 7.74 5.05 6.34 14.14 12.44 1.14 8.65 7.81 3.66 6.16 1.40 1.55 2.36 5.60 11.05 0.78 7.12 1.73 81 I14_AR1 ActiveIntronRegion 0 22.86 26.10 16.43 21.90 28.06 15.13 16.79 10.44 15.91 13.83 6.96 2.25 5.79 4.56 8.42 1.34 2.97 6.63 4.78 16.21 0.00 10.90 2.64 82 E15_Aa NovelBoundary 0 34.97 25.59 21.50 48.51 26.06 20.84 16.25 27.40 22.25 26.35 13.90 12.30 5.84 6.83 15.20 10.77 11.69 21.39 16.75 23.07 0.00 13.41 8.37 83 ER15a ExonRegion 0 75.31 93.30 45.52 84.23 74.37 53.64 34.10 37.49 52.02 36.85 46.08 32.78 55.41 35.70 61.76 27.93 46.54 22.94 24.58 48.99 21.89 28.85 20.97 84 ER15b ExonRegion 0 0.00 10.17 1.63 0.91 0.00 0.00 0.00 1.73 0.00 0.00 0.00 2.89 0.00 0.00 0.00 0.00 2.20 0.00 0.00 2.13 0.00 0.00 0.00 85 IG3 Intergenic 0 3.37 33.80 8.52 12.26 9.75 24.21 9.19 9.09 19.91 11.48 0.88 0.41 0.82 2.34 0.00 0.00 0.00 6.81 1.81 13.32 0.00 2.37 1.00 86 IG3_SR1 SilentIntergenicRegion 0 3.42 34.23 8.64 12.42 9.88 24.54 9.31 9.20 20.17 11.61 0.89 0.41 0.83 2.37 0.00 0.00 0.00 6.91 1.84 13.50 0.00 2.40 1.02