Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EPHA5 Gene 0 0.50 4.52 8.03 90.32 56.69 59.65 0.07 4.85 197.96 131.32 0.00 0.49 0.00 0.02 0.00 0.00 0.00 1.67 18.89 24.84 0.00 1.17 0.36 2 273854 Transcript 0 0.23 1.48 4.91 33.01 12.47 13.47 0.17 0.85 88.03 50.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 11.80 15.33 0.00 0.45 0.36 3 432638 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 354839 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 IG35_AR16 ActiveIntergenicRegion 0 0.00 0.00 0.00 1.06 5.60 0.25 0.00 0.00 14.16 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 0.00 0.00 6 IG35_AR15 ActiveIntergenicRegion 0 0.00 0.79 0.38 0.76 4.70 1.06 0.79 0.37 20.63 8.52 0.00 2.98 0.38 0.01 0.52 0.00 0.00 0.00 2.44 0.01 0.00 0.26 0.00 7 IG35_AR14 ActiveIntergenicRegion 0 0.44 0.09 2.70 13.25 44.96 15.37 0.00 2.38 47.24 31.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.06 3.06 3.02 0.00 0.22 0.31 8 IG35_SR13 SilentIntergenicRegion 0 0.46 0.63 2.83 13.02 46.09 21.05 0.05 2.76 71.31 44.82 0.00 0.26 0.00 0.00 0.00 0.00 0.00 0.31 4.45 4.91 0.00 0.23 0.00 9 IG35_AR13 ActiveIntergenicRegion 0 0.00 0.78 1.35 10.42 41.82 12.01 0.00 0.98 46.08 28.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 6.26 2.13 0.00 0.00 0.00 10 IG35_SR12 SilentIntergenicRegion 0 0.00 0.00 2.45 6.13 22.74 9.17 0.00 0.00 49.40 26.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 15.93 6.38 0.00 0.00 0.00 11 IG35_AR12 ActiveIntergenicRegion 0 0.00 0.68 1.29 8.47 31.78 16.60 0.00 1.29 53.31 27.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 4.93 5.99 0.00 0.00 0.00 12 IG35_AR11 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 21.37 9.01 0.00 1.56 15.24 8.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 13 IG35_SR9 SilentIntergenicRegion 0 0.00 0.33 0.08 2.07 6.19 1.87 0.00 0.00 15.30 8.97 0.00 0.00 0.18 0.12 0.00 0.00 0.00 0.00 0.88 2.16 0.00 0.00 0.00 14 IG35_AR6 ActiveIntergenicRegion 0 0.00 1.19 0.00 5.22 11.75 8.70 0.00 0.63 27.58 17.62 0.00 0.95 0.00 0.00 0.00 0.00 0.00 1.71 12.39 2.02 0.00 0.00 0.00 15 IG35_SR5 SilentIntergenicRegion 0 0.04 0.37 0.70 4.69 9.69 5.37 0.00 0.61 21.12 12.72 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.25 2.31 3.44 0.12 0.04 0.00 16 IG35_AR4 ActiveIntergenicRegion 0 0.60 0.29 0.52 32.29 13.63 3.66 0.00 1.10 14.36 11.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.36 6.55 0.00 0.00 0.00 17 IG35_SR3 SilentIntergenicRegion 0 0.00 0.00 2.72 16.94 9.22 0.68 0.00 0.00 11.15 5.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 18 IG35_AR3 ActiveIntergenicRegion 0 0.00 1.49 2.40 43.33 17.20 5.09 0.00 0.75 11.30 10.00 0.00 1.04 0.00 0.00 0.00 0.00 0.00 0.00 4.66 10.88 0.00 0.00 0.00 19 IG35_SR2 SilentIntergenicRegion 0 0.16 0.66 2.14 26.86 12.33 2.69 0.00 0.67 12.12 11.56 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.09 2.79 9.94 0.00 0.00 0.06 20 IG35_AR2 ActiveIntergenicRegion 0 0.00 0.00 1.32 24.69 10.50 1.75 0.00 0.00 18.76 8.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.52 1.38 11.26 0.00 0.00 0.00 21 IG35_SR1 SilentIntergenicRegion 0 0.00 0.00 3.14 25.38 24.95 6.07 0.00 0.00 13.81 14.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 8.23 10.86 0.00 0.00 0.00 22 IG35_AR1 ActiveIntergenicRegion 0 0.42 1.29 9.15 47.32 27.72 6.85 0.00 2.86 20.00 36.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.56 12.93 14.82 0.00 0.00 0.00 23 ER1a ExonRegion 0 0.90 2.03 14.35 77.46 39.71 39.32 0.66 3.42 195.57 141.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.64 47.20 40.73 0.00 1.82 1.46 24 E1_Ab KnownBoundary 0 3.19 0.00 11.09 54.67 60.02 42.42 0.00 2.42 144.67 119.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 31.15 42.82 0.00 0.00 0.00 25 ER1b ExonRegion 0 0.65 0.78 7.74 29.96 15.00 26.78 0.00 0.88 90.30 66.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 21.83 26.85 0.00 2.41 0.57 26 E1_Ac KnownBoundary 0 0.00 0.00 9.58 30.40 32.77 15.28 0.00 7.27 81.68 61.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.52 40.19 19.94 0.00 0.00 3.84 27 ER1c ExonRegion 0 2.00 2.52 4.25 27.95 21.90 26.83 0.00 0.86 119.57 70.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.29 22.15 25.49 0.00 0.98 0.00 28 E1a_E2a KnownJunction 0 0.00 6.18 0.00 29.40 12.31 47.19 0.00 1.68 97.42 62.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.87 8.38 8.56 0.00 0.00 0.00 29 ER2a ExonRegion 0 0.00 7.29 1.40 36.19 17.70 48.69 0.00 2.66 176.03 88.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 10.14 27.43 0.00 0.00 0.00 30 E2a_E3a KnownJunction 0 0.00 6.58 3.67 46.91 48.73 87.39 0.00 2.55 281.71 124.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 42.82 62.06 0.00 0.00 0.00 31 ER3a ExonRegion 0 0.00 6.20 12.15 77.32 45.59 57.91 0.00 7.65 292.63 132.71 0.00 0.55 0.00 0.00 0.00 0.00 0.00 4.38 36.72 49.82 0.00 3.04 2.48 32 E3_Da NovelBoundary 0 0.00 0.00 3.22 11.42 0.00 2.73 0.00 0.00 73.21 15.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 17.39 0.00 0.00 0.00 33 E3a_E4a KnownJunction 0 0.00 0.00 4.67 72.45 26.74 30.72 0.00 5.79 245.95 141.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.22 21.41 0.00 0.00 0.00 34 E3a_E6a NovelJunction 0 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 22.89 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 35 I3_SR1 SilentIntronRegion 0 0.00 0.80 1.17 8.38 11.15 3.22 0.00 2.54 77.06 21.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 4.76 10.41 0.00 1.43 0.38 36 I3_AR1 ActiveIntronRegion 0 0.00 0.45 4.71 19.04 14.98 6.45 0.00 3.56 107.88 25.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 5.98 12.32 0.00 1.62 0.83 37 I3_SR2 SilentIntronRegion 0 0.42 1.15 5.94 25.80 20.28 4.82 0.00 2.44 104.98 31.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 7.84 11.47 0.00 2.56 0.14 38 I3_AR2 ActiveIntronRegion 0 0.36 1.04 9.49 37.08 22.00 10.17 0.00 4.01 114.84 38.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 6.44 9.04 0.00 2.39 0.37 39 I3_SR3 SilentIntronRegion 0 0.75 1.01 4.43 41.49 24.06 12.01 0.09 2.63 86.08 31.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.33 10.64 7.13 0.00 1.28 0.21 40 I3_AR3 ActiveIntronRegion 0 0.00 5.19 8.10 56.81 19.18 4.30 0.00 5.06 76.92 22.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.30 6.99 0.00 1.29 0.00 41 I3_AR4 ActiveIntronRegion 0 0.86 1.98 18.47 85.94 32.04 12.48 0.00 3.74 110.45 43.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 4.63 7.59 0.00 1.21 0.34 42 ER4a ExonRegion 0 0.00 4.04 3.16 70.14 24.51 59.99 0.00 3.58 190.20 96.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 32.73 26.38 0.00 0.68 0.00 43 E4a_E5a KnownJunction 0 0.00 0.00 0.00 55.80 24.11 63.60 0.00 7.60 178.88 98.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 20.05 27.36 0.00 0.00 0.00 44 E4a_E6a NovelJunction 0 0.00 0.00 0.00 9.59 3.90 0.00 0.00 0.00 26.19 7.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 45 ER5a ExonRegion 0 0.00 4.19 1.92 61.82 19.47 49.11 0.00 1.58 136.64 96.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.98 19.79 26.61 0.00 0.32 0.10 46 E5a_E6a KnownJunction 0 0.00 3.35 3.10 49.78 20.37 64.34 0.00 2.55 125.37 105.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.98 21.41 0.00 0.00 3.59 47 ER6a ExonRegion 0 0.00 5.92 8.93 76.28 33.69 56.83 0.00 1.69 180.64 124.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 16.00 37.33 0.00 0.85 0.94 48 E6a_E7a KnownJunction 0 0.00 3.03 9.40 54.94 31.41 58.83 0.00 2.51 184.98 116.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 22.97 21.22 0.00 0.00 0.00 49 ER7a ExonRegion 0 0.67 4.84 11.83 62.45 46.54 59.53 0.00 5.02 161.45 103.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 18.16 30.16 0.00 0.00 0.94 50 E7a_E8a KnownJunction 0 0.00 6.71 8.31 68.36 11.38 37.82 0.00 4.44 129.34 80.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.41 18.02 0.00 0.00 0.00 51 ER8a ExonRegion 0 0.00 5.45 4.76 51.79 20.39 38.03 0.00 1.69 131.76 87.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.15 16.14 26.42 0.00 0.00 0.00 52 E8a_E9a KnownJunction 0 0.00 2.57 1.80 14.08 8.32 5.79 0.00 0.00 57.55 24.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 53 E8a_E10a KnownJunction 0 0.00 10.00 6.74 41.42 19.78 55.99 0.00 2.55 79.66 71.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.91 24.93 0.00 0.00 0.00 54 ER9a ExonRegion 0 0.00 1.32 1.73 19.31 1.86 5.89 0.00 0.00 41.98 15.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.90 0.00 5.06 0.00 0.00 0.00 55 E9a_E10a KnownJunction 0 0.00 0.00 1.77 21.18 0.00 2.90 0.00 0.00 57.03 21.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.53 0.00 0.00 0.00 56 E10_Aa NovelBoundary 0 0.00 0.00 0.00 35.13 4.16 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 ER10a ExonRegion 0 0.00 2.48 4.96 75.34 58.67 66.04 0.00 2.14 167.76 111.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.04 25.01 33.70 0.00 0.89 0.00 58 E10a_E11a KnownJunction 0 0.00 0.00 3.16 95.76 41.43 79.10 0.00 2.30 214.81 147.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.69 32.38 37.71 0.00 3.12 0.00 59 ER11a ExonRegion 0 0.00 3.84 2.38 86.90 41.84 101.28 0.00 3.26 180.07 121.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 19.16 21.58 0.00 0.66 0.00 60 E11a_E12a KnownJunction 0 0.00 3.09 3.28 122.60 47.37 102.04 0.00 5.01 195.83 149.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 37.08 30.62 0.00 3.00 0.00 61 ER12a ExonRegion 0 0.18 5.39 6.98 107.08 61.83 56.50 0.00 5.67 213.77 130.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.38 24.08 32.13 0.00 0.87 0.00 62 E12a_E13a KnownJunction 0 3.48 8.16 8.52 122.96 70.71 135.72 0.00 5.09 213.71 125.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 39.81 26.46 0.00 2.27 0.00 63 ER13a ExonRegion 0 2.94 5.38 7.45 125.76 82.69 99.65 0.00 7.61 222.12 125.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.56 22.30 40.56 0.00 0.77 0.00 64 E13a_E14a KnownJunction 0 0.00 3.35 2.75 144.57 104.33 75.35 0.00 8.30 232.29 136.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 14.21 46.28 0.00 2.94 0.00 65 ER14a ExonRegion 0 0.00 7.14 6.57 107.97 58.46 59.17 0.32 7.42 198.10 116.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 28.24 38.60 0.00 1.07 0.00 66 E14a_E15a KnownJunction 0 0.00 0.00 3.43 99.89 35.40 46.00 0.00 2.18 169.41 128.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 25.98 30.30 0.00 5.51 0.00 67 ER15a ExonRegion 0 2.16 3.57 15.88 97.61 48.91 64.34 0.41 4.10 179.85 128.22 0.00 3.64 0.00 0.00 0.00 0.00 0.00 2.57 29.22 32.44 0.00 0.47 0.00 68 E15_Da NovelBoundary 0 0.00 2.70 1.24 16.35 23.43 5.34 0.00 3.78 10.62 9.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 69 E15a_E16a KnownJunction 0 0.00 6.38 6.48 108.34 83.28 80.24 0.00 3.29 185.41 127.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.94 26.59 0.00 0.00 0.00 70 ER16a ExonRegion 0 1.11 5.75 14.10 99.38 47.69 61.33 0.03 3.15 190.63 128.69 0.00 2.81 0.00 0.00 0.00 0.00 0.00 2.31 33.82 35.00 0.00 1.14 0.00 71 E16a_E17a KnownJunction 0 0.00 11.05 14.52 129.29 50.08 91.59 0.00 4.44 211.92 160.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.02 17.60 44.81 0.00 2.51 0.00 72 ER17a ExonRegion 0 1.95 4.63 13.68 103.46 76.38 90.97 0.00 5.44 196.52 139.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.91 28.89 35.35 0.00 0.55 0.00 73 E17_Da NovelBoundary 0 2.82 5.46 10.76 92.26 29.80 55.42 0.00 2.42 105.87 63.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.19 11.63 0.00 0.00 0.00 74 E17a_E18a KnownJunction 0 0.00 0.00 3.05 43.28 28.01 27.94 0.00 5.09 145.75 74.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 42.82 29.85 0.00 0.00 0.00 75 I17 Intron 0 0.27 0.96 2.94 34.23 10.91 9.21 0.09 1.51 28.96 17.57 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.05 1.28 1.98 0.00 0.06 0.04 76 I17_AR1 ActiveIntronRegion 0 1.32 3.58 10.99 102.39 51.19 40.18 0.27 4.69 93.73 54.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 2.31 8.06 0.00 0.00 0.61 77 I17_SR1 SilentIntronRegion 0 0.48 7.56 10.43 120.81 58.14 58.40 0.72 8.86 115.83 80.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.50 5.34 5.22 0.00 0.57 0.00 78 I17_AR2 ActiveIntronRegion 0 0.55 1.80 12.78 123.04 31.02 30.68 0.27 6.56 89.72 53.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 3.89 5.17 0.00 0.32 0.00 79 ER18a ExonRegion 0 0.43 2.52 3.33 69.56 42.12 44.67 0.00 4.33 181.05 113.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.03 25.04 20.08 0.00 0.70 0.00 80 E18_Da KnownBoundary 0 0.00 0.00 3.67 62.70 37.78 35.04 0.00 2.09 187.21 129.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.92 21.67 0.00 0.00 0.00 81 ER18b ExonRegion 0 0.47 4.73 7.58 104.38 71.34 64.93 0.03 5.46 205.42 146.65 0.00 0.60 0.00 0.04 0.00 0.00 0.00 0.50 10.68 16.88 0.00 1.07 0.07