Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GRSF1 Gene 0 72.62 103.62 63.05 66.48 74.28 84.95 61.73 43.83 52.63 72.15 130.61 128.88 56.87 106.76 94.21 78.01 95.92 56.14 60.26 91.29 60.93 83.92 50.02 2 254799 Transcript 0 17.79 56.17 27.57 19.79 28.72 46.95 41.87 19.54 43.06 77.28 257.05 18.42 42.14 176.84 79.78 129.96 217.66 108.80 55.11 120.07 133.35 62.69 83.83 3 439371 Transcript 0 5.17 3.35 2.85 0.01 9.43 4.70 2.54 1.49 1.36 4.61 5.65 0.37 3.72 2.12 0.66 5.85 1.28 6.72 8.13 5.69 15.65 0.68 1.85 4 IG38_AR2 ActiveIntergenicRegion 0 4.08 3.94 14.72 8.45 7.98 1.24 5.02 7.01 5.51 2.80 0.00 2.16 3.14 0.52 1.05 0.81 0.00 2.28 2.92 3.74 0.30 0.00 2.76 5 ER1a ExonRegion 0 10.03 12.10 11.94 3.05 9.99 28.87 12.15 7.98 14.68 25.33 90.74 4.72 10.74 65.55 51.27 68.01 88.81 36.29 21.46 36.57 71.11 24.34 28.78 6 E1_Ab KnownBoundary 0 7.26 17.89 13.63 3.13 12.90 21.35 18.50 6.41 19.13 26.86 19.48 6.30 0.00 35.61 31.15 16.06 90.14 1.87 11.58 5.43 43.00 35.58 17.58 7 ER1b ExonRegion 0 12.57 46.52 21.71 15.38 21.24 33.70 34.71 15.39 34.00 67.74 172.81 17.32 46.02 157.08 81.60 68.27 177.22 56.01 38.32 98.47 94.07 57.04 68.00 8 E1_Da KnownBoundary 0 0.00 0.00 3.49 1.93 0.00 0.00 1.81 2.34 0.00 2.36 2.37 0.00 0.00 0.00 0.00 0.00 4.68 12.85 0.00 0.00 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 25.56 100.25 43.20 36.53 47.45 65.02 71.59 31.09 71.44 129.23 423.37 32.11 73.53 288.13 108.29 191.92 346.52 181.32 88.76 203.58 195.59 101.04 138.89 10 ER1c ExonRegion 0 3.08 3.62 2.89 0.01 2.40 6.57 3.27 1.01 1.59 2.88 3.71 0.75 1.27 4.24 1.33 4.10 2.55 5.86 2.15 5.24 8.62 1.35 3.70 11 E1b_E2a KnownJunction 0 7.26 3.09 2.81 0.00 16.47 2.84 1.81 1.97 1.13 6.34 7.58 0.00 6.17 0.00 0.00 7.60 0.00 7.59 14.12 6.14 22.67 0.00 0.00 12 ER2a ExonRegion 0 85.47 138.54 120.44 113.48 116.28 153.90 106.82 83.63 123.60 171.61 442.98 181.81 103.90 402.45 239.53 284.85 341.95 300.02 173.65 296.64 299.35 162.13 180.29 13 E2a_E3a KnownJunction 0 104.46 191.02 187.07 183.89 189.39 245.14 187.87 115.91 166.32 205.31 543.66 238.43 127.91 531.99 350.95 441.68 478.82 414.66 304.95 479.89 395.62 276.35 302.70 14 ER3a ExonRegion 0 103.67 181.47 202.16 228.53 202.64 266.17 156.75 133.22 198.45 243.18 618.94 357.71 202.66 557.74 352.17 388.78 524.82 372.52 319.84 413.91 393.33 302.36 280.84 15 E3a_E4a KnownJunction 0 148.47 199.90 239.94 261.80 231.32 273.65 214.54 146.06 209.20 243.64 681.54 671.02 261.67 576.08 372.46 379.81 533.71 336.15 202.74 422.17 370.60 318.41 312.43 16 ER4a ExonRegion 0 189.31 239.86 197.76 218.36 232.86 294.03 198.83 147.95 196.84 265.07 715.75 540.46 233.69 525.54 390.86 418.90 501.07 329.85 299.87 389.23 332.01 328.94 284.77 17 E4_Da NovelBoundary 0 13.11 30.06 9.08 31.50 18.34 2.90 39.22 10.64 15.74 13.81 29.95 30.76 0.00 14.07 15.20 12.39 26.93 20.81 4.05 20.90 7.97 21.43 7.34 18 E4a_E5a KnownJunction 0 182.11 313.83 232.58 236.17 279.37 313.51 253.10 150.25 205.96 259.03 809.99 429.29 207.45 472.78 453.55 348.46 533.61 193.71 347.87 343.30 273.98 359.01 200.94 19 I4 Intron 0 19.66 18.21 10.90 22.23 16.20 3.50 18.55 9.18 10.23 13.75 8.82 17.59 10.55 9.99 10.18 9.37 10.40 4.27 3.70 13.95 1.28 13.47 7.55 20 I4_AR1 ActiveIntronRegion 0 21.76 21.73 10.87 24.73 16.65 3.22 18.44 5.92 11.45 14.80 8.37 19.57 12.35 10.16 8.50 8.44 10.72 4.23 4.31 15.55 1.79 12.97 6.36 21 I4_SR1 SilentIntronRegion 0 16.54 12.80 11.10 18.51 15.68 3.98 18.96 14.53 8.38 12.24 9.65 14.61 7.78 9.83 12.98 10.94 10.03 4.40 2.77 11.54 0.48 14.44 9.56 22 E5_Aa NovelBoundary 0 19.93 3.35 10.88 37.26 44.65 8.46 46.42 14.91 15.34 8.92 9.11 12.00 12.66 9.54 19.28 14.61 3.83 8.58 7.53 27.36 2.59 17.27 16.82 23 ER5a ExonRegion 0 204.74 415.57 223.19 233.34 228.21 313.96 225.19 142.84 197.39 264.07 615.17 584.48 284.57 471.45 390.33 362.53 435.38 213.94 232.39 367.43 236.83 319.30 219.71 24 E5_Da NovelBoundary 0 6.08 27.10 12.27 31.50 11.88 0.00 13.25 9.94 10.59 3.89 16.79 29.11 6.98 7.42 30.66 7.78 13.37 1.91 4.24 16.55 0.00 19.59 22.96 25 E5a_E6a KnownJunction 0 279.61 385.79 230.09 245.86 242.61 481.71 317.26 133.74 206.80 269.99 581.36 526.52 333.26 393.37 408.56 281.64 504.16 165.81 173.46 340.55 202.01 268.75 170.81 26 I5 Intron 0 17.17 11.00 8.13 14.61 14.14 7.63 11.68 6.43 5.59 5.69 7.56 11.95 7.99 5.71 10.05 11.50 6.73 2.95 4.37 9.38 3.76 11.00 5.13 27 I5_SR1 SilentIntronRegion 0 14.94 10.16 7.40 12.59 12.00 8.35 11.58 5.73 4.78 4.95 7.75 9.48 6.16 5.44 9.78 11.16 6.73 2.95 4.89 8.63 3.85 10.10 5.75 28 I5_AR1 ActiveIntronRegion 0 25.57 14.18 10.91 22.20 22.19 5.01 12.13 9.06 8.64 8.47 6.90 21.20 14.81 6.75 11.14 12.85 6.79 2.94 2.49 12.23 3.45 14.43 2.88 29 E6_Aa NovelBoundary 0 21.26 8.88 25.90 33.93 33.11 30.44 20.62 24.32 19.07 14.08 5.00 34.06 0.00 2.47 10.14 8.54 9.26 13.47 4.80 15.40 5.56 5.82 3.93 30 ER6a ExonRegion 0 270.90 337.04 314.07 299.02 356.58 384.57 278.59 176.82 238.67 317.93 681.32 711.25 329.01 500.95 469.30 382.65 488.48 195.12 301.28 416.26 211.50 380.47 241.38 31 E6_Da NovelBoundary 0 0.00 20.72 7.04 13.78 0.00 22.54 3.62 21.44 14.76 22.51 9.58 19.21 12.82 2.47 15.20 11.79 29.73 25.45 19.77 25.82 2.59 2.39 14.94 32 E6a_E7a KnownJunction 0 343.84 325.27 318.76 256.98 500.76 420.10 303.80 145.77 190.22 266.69 664.75 640.41 353.55 488.79 439.71 317.27 407.20 221.20 238.31 328.15 210.97 288.47 216.14 33 I6 Intron 0 8.29 25.55 13.36 21.77 16.42 12.06 12.33 9.90 6.26 19.08 4.86 6.23 4.53 4.63 7.83 7.03 7.32 12.50 5.65 19.50 1.14 5.39 7.60 34 I6_SR1 SilentIntronRegion 0 8.32 25.12 13.91 21.85 17.24 12.68 12.70 10.25 6.33 19.79 4.67 6.08 4.71 4.94 8.14 7.75 7.08 13.56 5.88 19.71 0.92 5.56 8.09 35 I6_AR1 ActiveIntronRegion 0 8.30 30.44 8.56 21.64 9.06 6.52 9.19 6.81 5.80 12.83 6.78 7.86 2.89 1.77 5.13 0.32 9.85 2.67 3.63 18.10 3.32 3.91 3.07 36 E7_Aa NovelBoundary 0 17.04 43.22 25.10 18.61 26.91 2.27 32.72 12.77 7.41 42.58 4.69 6.30 0.00 4.94 8.90 12.05 17.02 9.74 4.24 25.89 2.66 0.00 8.45 37 ER7a ExonRegion 0 338.47 452.14 314.20 264.05 353.24 356.66 263.60 171.06 205.98 269.17 676.01 617.20 264.64 505.86 503.51 366.08 451.79 307.30 343.58 327.61 342.66 386.01 224.73 38 E7_Da NovelBoundary 0 41.79 80.78 34.21 67.19 57.47 56.39 52.24 31.05 28.85 69.95 28.74 38.11 0.00 34.55 23.36 39.99 36.47 22.30 13.37 62.96 12.66 39.74 16.82 39 E7a_E8a KnownJunction 0 524.09 517.87 251.91 201.57 411.55 313.06 278.14 185.33 135.82 207.37 708.02 478.81 138.30 650.66 595.96 468.77 510.89 249.51 408.95 374.62 440.72 447.07 249.00 40 I7 Intron 0 70.37 56.59 31.74 48.59 55.93 36.26 47.52 31.46 24.80 38.96 40.16 33.58 23.14 35.32 32.62 39.67 29.93 33.78 27.28 46.08 15.82 28.07 31.06 41 I7_AR1 ActiveIntronRegion 0 42.12 46.16 35.82 37.56 44.99 32.89 37.46 23.81 18.57 33.52 47.12 32.61 17.52 34.45 27.43 49.97 31.45 39.39 27.67 49.49 11.73 28.02 30.45 42 I7_AR2 ActiveIntronRegion 0 94.27 65.70 28.66 58.12 65.45 39.37 56.21 38.04 30.16 43.78 34.78 34.66 27.95 36.35 37.18 31.55 28.95 29.46 27.18 43.70 19.32 28.37 31.85 43 E8_Aa NovelBoundary 0 140.77 94.26 71.26 81.94 102.04 62.18 80.11 36.06 30.47 59.23 50.54 24.31 33.93 54.33 58.84 42.72 45.63 36.64 48.00 84.88 20.76 38.70 48.91 44 ER8a ExonRegion 0 255.68 388.14 261.84 246.64 309.80 322.07 240.22 165.68 167.71 239.20 573.15 337.51 174.12 517.74 465.18 361.94 413.80 257.01 259.89 347.18 358.91 328.80 204.70 45 E8_Da NovelBoundary 0 9.85 17.76 43.32 59.60 3.99 5.22 6.09 15.16 15.19 20.47 7.53 11.70 14.28 12.30 10.14 19.23 4.68 22.97 9.51 35.73 6.12 5.51 11.78 46 E8a_E9a KnownJunction 0 235.52 345.99 291.62 235.83 370.37 284.50 265.02 226.48 172.19 258.76 515.29 242.78 111.68 435.75 487.18 294.03 397.29 263.98 233.89 349.18 293.44 259.32 178.49 47 E8a_E10a NovelJunction 0 0.00 0.00 1.80 0.00 4.33 0.00 13.29 0.00 6.25 0.00 2.63 0.00 0.00 17.13 13.35 8.72 4.02 10.28 0.00 6.52 5.62 8.08 20.74 48 E9_Aa NovelBoundary 0 13.34 8.16 8.31 37.06 8.32 0.00 12.23 19.39 11.20 14.21 6.84 20.56 14.28 2.12 11.99 11.02 12.72 14.43 0.00 3.26 2.47 3.12 4.35 49 ER9a ExonRegion 0 325.29 358.53 276.46 246.99 401.65 407.96 282.67 207.88 197.80 290.87 589.48 320.73 211.49 522.23 484.78 319.56 414.11 242.42 260.31 404.57 252.52 362.23 224.91 50 E9_Da NovelBoundary 0 3.78 2.76 6.09 16.88 40.66 5.34 10.95 14.66 5.79 1.21 0.00 0.00 0.00 4.65 0.00 3.76 4.77 3.40 0.00 3.26 2.84 2.69 3.59 51 E9a_E10a KnownJunction 0 263.90 309.02 301.59 291.87 225.47 347.87 284.45 234.90 212.15 340.18 488.07 299.80 170.12 525.22 637.49 328.55 345.96 211.16 282.64 385.29 213.56 522.57 213.75 52 I9 Intron 0 12.33 10.35 8.40 19.67 17.80 9.14 9.46 4.66 5.68 5.27 2.37 3.58 6.24 3.45 4.35 2.18 2.26 4.10 4.83 9.58 1.83 4.89 4.46 53 I9_SR1 SilentIntronRegion 0 12.36 10.38 8.42 19.73 17.85 9.17 9.48 4.67 5.69 5.29 2.37 3.59 6.26 3.46 4.36 2.19 2.27 4.11 4.85 9.61 1.84 4.91 4.47 54 E10_Aa NovelBoundary 0 16.37 26.25 14.52 31.03 30.56 9.37 22.74 17.42 16.52 4.11 2.11 0.00 8.28 2.47 0.00 12.90 3.83 3.77 0.00 14.25 0.00 8.76 4.35 55 ER10a ExonRegion 0 50.90 72.15 32.47 39.15 41.21 45.18 35.30 25.76 27.89 38.91 33.53 71.75 25.91 28.88 34.19 19.96 22.98 11.64 19.50 38.63 9.33 41.69 13.59