Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DCUN1D4 Gene 0 70.05 185.28 50.14 154.00 115.16 179.89 106.16 74.99 79.42 107.03 76.72 131.72 77.04 60.27 50.38 46.95 48.55 61.92 54.07 116.22 39.68 75.58 53.80 2 381441 Transcript 0 16.23 72.75 6.65 43.05 44.57 69.90 34.54 31.34 18.87 26.43 26.95 18.91 22.24 20.07 30.53 4.02 17.11 43.61 9.22 75.61 12.23 37.66 23.56 3 334635 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 477560 Transcript 0 13.67 17.30 6.04 24.50 12.13 22.76 11.61 9.27 10.88 10.95 17.42 36.33 8.85 17.00 11.46 13.27 5.93 8.00 8.94 18.16 9.60 3.94 7.48 5 451288 Transcript 0 2.45 0.96 2.35 0.33 0.00 3.02 2.44 0.04 7.16 5.65 1.62 0.04 0.76 4.75 0.01 0.50 7.96 2.04 0.00 2.19 11.78 1.96 11.35 6 381437 Transcript 0 1.68 3.05 3.06 3.07 6.19 10.77 3.97 3.02 9.65 10.94 10.23 4.33 5.86 8.22 2.18 7.43 14.30 14.32 3.19 11.97 16.11 7.29 14.19 7 ER1a ExonRegion 1 8.86 13.65 3.58 3.88 12.92 37.34 17.97 5.21 9.13 9.27 31.01 2.12 12.75 19.44 9.13 54.22 35.63 50.55 45.40 20.80 29.97 13.24 57.82 8 E1_Ab KnownBoundary 1 83.13 103.93 27.14 25.80 79.29 230.72 119.11 24.19 51.48 68.31 161.73 42.76 143.17 114.55 61.56 394.08 139.22 326.40 344.67 165.16 108.67 110.77 462.50 9 ER1b ExonRegion 1 32.26 39.71 20.57 22.99 27.98 100.86 45.51 23.93 45.66 59.39 79.94 13.73 44.29 50.93 25.82 186.14 80.78 261.01 142.84 88.27 43.19 50.75 206.24 10 E1a_E4b KnownJunction 0 0.00 12.10 2.96 14.92 7.72 33.84 17.75 7.06 24.83 26.86 28.01 5.70 34.41 21.01 5.69 35.38 37.12 42.95 12.89 33.30 19.40 11.39 11.52 11 E2_Aa NovelBoundary 0 12.74 0.00 5.12 0.00 0.00 0.00 2.25 0.00 0.00 2.39 1.95 0.00 12.99 8.77 0.00 10.68 0.00 2.03 0.00 4.73 15.38 5.33 18.87 12 ER2a ExonRegion 0 1.56 1.92 1.54 0.66 0.00 3.14 0.42 0.08 3.56 2.34 0.81 0.08 1.52 4.91 0.02 1.00 2.73 1.52 0.00 1.56 6.39 3.91 7.84 13 E2a_E4b KnownJunction 0 3.33 0.00 3.16 0.00 0.00 2.90 4.46 0.00 10.76 8.97 2.42 0.00 0.00 4.59 0.00 0.00 13.18 2.57 0.00 2.81 17.17 0.00 14.85 14 I2_AR2 ActiveIntronRegion 0 0.42 4.85 0.04 3.80 1.33 2.88 9.94 4.57 1.71 4.00 6.66 18.06 10.79 10.29 4.59 2.08 7.84 8.23 8.93 11.71 17.76 4.06 4.40 15 I2_AR4 ActiveIntronRegion 1 6.44 19.69 5.68 15.10 11.39 9.98 15.64 6.63 3.40 12.72 0.14 11.43 21.71 2.48 3.14 4.23 0.00 1.96 5.75 10.79 1.16 2.43 3.09 16 ER3a ExonRegion 0 0.18 0.00 0.00 0.00 0.33 0.46 0.00 0.00 0.15 0.10 0.16 0.00 0.00 0.20 0.00 0.00 0.55 0.00 0.00 0.53 0.28 0.00 0.49 17 ER4a ExonRegion 0 3.17 6.10 6.13 6.13 12.04 21.09 7.94 6.05 19.14 21.79 20.30 8.66 11.73 16.24 4.35 14.86 28.06 28.64 6.37 23.40 31.95 14.58 27.90 18 ER4b ExonRegion 1 10.88 19.81 11.83 17.39 36.16 56.77 36.71 17.93 39.91 56.90 126.11 66.74 65.06 60.12 23.33 47.30 135.38 58.65 49.42 83.68 132.69 33.87 66.24 19 E4a_E5a KnownJunction 0 21.19 27.10 13.16 24.27 15.11 67.80 52.42 23.91 43.98 62.10 176.15 133.99 55.03 90.94 33.38 78.36 146.61 59.86 58.45 136.40 96.31 37.84 55.40 20 E4a_E6a NovelJunction 0 0.00 0.00 0.00 5.33 0.00 8.46 1.90 8.58 17.25 17.16 0.00 0.00 0.00 2.47 0.00 0.00 0.00 28.77 3.48 5.50 0.00 0.00 0.00 21 ER5a ExonRegion 0 15.50 30.25 24.08 42.39 12.04 43.51 39.35 40.66 63.24 73.63 140.38 84.75 67.89 110.32 48.52 113.61 99.69 199.70 93.17 130.90 85.39 81.36 96.62 22 E5a_E6a KnownJunction 1 15.04 50.45 35.24 54.47 34.80 16.47 48.18 47.32 67.39 69.55 108.61 37.81 95.45 119.20 55.63 146.29 68.35 300.16 119.82 150.33 78.09 131.10 133.51 23 I5_AR1 ActiveIntronRegion 0 13.78 20.40 7.78 14.01 8.56 3.83 14.01 6.03 5.17 8.66 1.88 6.14 3.84 1.43 5.98 3.96 3.10 12.22 13.64 14.49 2.42 0.74 2.96 24 I5_SR2 SilentIntronRegion 0 12.11 32.93 15.54 31.55 19.04 3.66 12.45 9.05 6.71 9.07 0.00 9.51 6.52 0.82 2.85 2.08 2.13 3.61 8.54 9.91 0.00 0.69 1.26 25 I5_AR2 ActiveIntronRegion 0 4.87 39.19 20.71 23.52 18.50 0.00 18.84 8.30 4.98 8.50 0.00 4.14 1.68 1.60 0.66 1.32 4.24 1.87 7.78 3.77 0.00 0.60 1.80 26 I5_AR5 ActiveIntronRegion 0 2.13 7.82 3.34 4.93 2.31 1.59 7.71 3.33 4.36 5.75 2.13 1.02 1.11 0.77 2.02 3.32 6.28 17.26 7.33 11.14 3.04 1.20 3.80 27 ER6a ExonRegion 1 15.42 42.49 22.78 46.66 51.47 76.88 62.65 44.05 61.66 65.24 108.71 132.52 119.37 111.89 56.59 189.41 79.74 159.07 162.59 131.95 71.94 92.53 235.85 28 E6_Da NovelBoundary 0 0.00 2.70 1.60 3.96 0.00 10.56 17.27 6.78 3.41 0.00 2.37 24.76 12.66 2.12 0.00 0.00 18.14 2.11 21.27 23.71 0.00 0.00 3.50 29 E6a_E7a KnownJunction 0 10.08 48.41 25.22 42.65 46.43 241.57 109.39 43.62 63.51 85.23 146.62 93.18 48.70 63.34 46.73 24.27 77.51 52.27 26.54 118.89 45.65 81.75 36.28 30 I6 Intron 0 4.56 6.00 4.72 9.53 7.43 13.38 21.83 6.65 7.25 4.86 9.86 32.14 33.63 11.49 4.25 7.29 14.14 5.92 9.94 16.40 4.50 6.73 6.26 31 I6_AR1 ActiveIntronRegion 0 1.79 6.76 4.34 7.22 7.35 2.00 12.05 5.72 6.85 0.59 4.17 16.04 28.20 6.02 3.33 5.61 13.27 6.26 11.49 19.52 5.68 1.76 4.84 32 I6_SR1 SilentIntronRegion 0 0.00 8.59 4.08 3.97 9.15 5.92 12.46 4.14 4.37 1.66 4.43 13.92 17.40 2.46 0.84 2.49 11.18 10.17 9.32 11.97 10.64 0.00 6.38 33 I6_AR2 ActiveIntronRegion 0 5.95 4.70 5.79 10.76 7.30 19.36 26.45 6.44 11.53 7.47 13.07 42.33 45.74 16.91 5.23 8.08 20.09 8.37 11.69 22.07 5.22 8.37 9.54 34 I6_SR2 SilentIntronRegion 0 4.49 5.86 3.81 9.38 7.37 13.73 23.59 7.16 5.86 4.44 9.78 32.27 32.10 11.61 4.47 8.11 13.39 4.81 10.17 14.30 3.77 7.88 4.66 35 I6_AR3 ActiveIntronRegion 0 5.43 7.86 6.19 11.04 7.53 10.82 16.57 6.84 4.34 5.17 9.55 28.51 22.82 6.77 3.20 5.57 5.86 3.12 4.48 10.77 2.79 5.19 6.08 36 E7_Aa NovelBoundary 0 18.37 11.71 8.19 21.11 19.95 30.32 29.28 10.80 10.21 0.00 14.06 58.52 26.30 9.30 13.35 11.88 4.02 6.76 0.00 3.07 2.35 3.12 4.35 37 ER7a ExonRegion 0 41.55 114.43 20.13 72.90 54.77 185.57 120.60 46.50 67.99 86.12 157.24 206.40 117.86 98.95 42.57 53.30 84.50 69.49 61.42 155.13 59.43 98.51 51.30 38 E7a_E8a KnownJunction 0 95.94 120.24 24.07 97.99 84.64 81.32 120.70 54.38 67.59 87.92 131.51 170.01 178.88 132.26 66.38 48.71 56.19 96.17 27.48 166.76 58.19 93.32 42.94 39 I7_AR5 ActiveIntronRegion 0 17.58 10.87 5.09 28.36 4.84 0.00 6.77 3.04 5.07 4.25 0.57 1.55 5.83 1.29 2.68 1.37 2.16 3.41 12.58 7.09 1.44 1.36 0.00 40 I7_AR6 ActiveIntronRegion 0 40.95 34.59 6.43 20.67 19.93 7.42 16.06 3.56 3.60 5.03 2.40 8.03 5.97 1.35 1.37 2.85 1.48 3.34 9.18 7.07 0.00 0.94 0.66 41 ER8a ExonRegion 0 50.20 70.46 25.09 92.23 50.84 86.52 85.70 66.00 83.47 89.41 159.12 191.96 140.63 108.79 57.33 53.79 83.45 70.92 50.43 161.76 52.73 109.87 55.67 42 E8_Da KnownBoundary 0 21.11 12.17 6.68 34.36 18.68 5.05 19.61 7.60 13.89 18.94 11.90 17.56 18.83 12.48 0.00 15.89 13.28 3.94 9.60 32.34 10.87 2.33 16.56 43 E8a_E9a KnownJunction 1 37.19 51.24 13.78 53.41 59.85 60.76 76.62 67.20 76.79 90.09 150.35 211.42 155.83 86.29 51.42 36.06 99.67 53.18 43.30 153.40 51.83 96.99 54.12 44 ER8b ExonRegion 0 15.63 17.56 9.37 31.02 24.74 45.41 23.60 11.95 15.99 23.58 16.77 26.21 18.93 22.64 13.17 13.70 11.12 12.93 20.34 35.49 12.27 11.87 20.65 45 E8_Db NovelBoundary 1 881.64 594.24 489.69 462.45 493.12 359.51 682.45 454.28 444.82 401.96 297.76 122.29 261.51 215.20 298.78 567.54 651.61 564.22 387.02 687.37 388.89 245.91 471.29 46 E8b_E9a KnownJunction 0 22.74 16.51 11.86 32.96 16.72 17.77 17.49 27.07 23.58 25.76 12.63 29.41 5.84 26.25 30.66 13.93 11.59 16.37 18.35 34.20 8.59 5.76 14.08 47 ER9a ExonRegion 0 66.88 120.42 27.26 111.34 88.27 101.96 81.67 48.43 74.51 105.88 162.32 292.76 106.85 123.22 61.43 60.41 94.11 69.01 57.13 160.29 69.06 110.45 81.30 48 E9a_E10a KnownJunction 0 111.65 171.09 23.62 131.12 96.35 161.04 110.80 63.87 66.81 81.63 126.77 242.93 100.32 137.68 69.10 55.63 83.59 62.88 43.95 141.90 67.89 106.55 111.48 49 I9_AR1 ActiveIntronRegion 0 2.46 8.66 1.38 7.89 5.75 2.67 11.59 7.00 3.06 8.91 4.82 14.89 7.59 3.97 3.60 4.60 7.74 17.57 3.70 13.76 2.78 0.51 3.97 50 I9_AR9 ActiveIntronRegion 0 15.80 36.55 17.67 20.36 16.14 4.02 18.04 16.07 8.81 13.12 3.53 4.14 8.37 2.95 3.93 4.61 12.21 23.39 9.11 11.52 8.13 1.40 4.86 51 ER10a ExonRegion 0 71.83 199.51 32.58 113.79 119.77 222.60 141.28 74.09 73.48 105.08 131.47 210.48 105.16 118.25 56.91 68.60 61.69 73.86 48.36 134.86 59.54 94.54 69.75 52 E10a_E11a KnownJunction 1 13.04 19.34 6.89 23.14 7.56 29.81 9.76 4.64 9.58 1.67 26.80 87.78 6.82 18.95 4.45 18.71 0.00 3.36 4.80 8.88 8.83 0.00 0.00 53 E10a_E12a KnownJunction 0 70.38 164.51 34.65 82.74 43.63 109.14 95.97 42.80 46.47 77.77 44.12 145.10 54.22 81.58 46.85 50.59 55.07 35.32 20.42 64.68 75.31 61.48 42.51 54 E10a_E13a KnownJunction 0 16.23 72.75 6.65 43.05 44.57 69.90 34.54 31.34 18.87 26.43 26.95 18.91 22.24 20.07 30.53 4.02 17.11 43.61 9.22 75.61 12.23 37.66 23.56 55 I10_AR2 ActiveIntronRegion 0 1.64 3.08 0.64 0.80 1.41 2.66 6.36 1.58 2.20 0.87 6.33 12.18 8.71 5.70 1.78 6.06 7.36 15.02 2.28 14.64 9.53 2.92 4.17 56 E11_Aa NovelBoundary 0 0.00 9.74 1.71 3.50 0.00 0.00 13.51 11.87 3.18 2.61 9.53 5.40 13.64 12.07 0.00 0.00 17.86 15.13 0.00 23.97 13.96 11.94 3.41 57 ER11a ExonRegion 0 13.76 18.37 2.10 18.03 8.41 18.34 7.19 2.69 5.25 0.72 22.54 38.27 12.65 14.68 4.56 12.42 2.18 5.77 1.19 8.97 12.44 2.08 2.67 58 E11_Da NovelBoundary 0 0.00 15.06 0.00 7.49 8.66 5.05 4.24 0.00 7.23 0.99 11.74 5.55 0.00 7.06 0.00 7.60 29.73 22.18 4.24 29.91 10.75 19.29 3.76 59 E11a_E12a KnownJunction 0 3.19 14.73 0.00 17.35 3.23 2.44 0.00 0.00 0.00 3.04 8.37 0.00 0.00 2.47 4.45 7.60 4.77 1.58 0.00 3.26 5.87 0.00 0.00 60 I11 Intron 0 2.34 6.49 1.48 7.57 4.20 13.41 10.69 3.92 7.18 6.96 13.09 11.07 10.97 7.18 1.27 4.88 8.75 19.46 3.05 17.85 8.16 10.27 7.71 61 I11_SR1 SilentIntronRegion 0 2.49 4.82 1.24 7.82 3.88 12.82 10.38 3.44 6.85 6.57 13.42 10.82 9.47 7.15 1.50 5.17 8.16 21.62 2.73 19.85 8.60 10.07 8.33 62 I11_AR2 ActiveIntronRegion 0 1.74 15.78 2.84 6.86 5.95 17.77 13.15 6.92 9.67 9.32 12.22 12.95 19.98 7.96 0.00 3.77 12.73 9.20 5.01 7.91 6.26 12.01 4.99 63 E12_Aa NovelBoundary 0 3.78 27.10 6.53 11.72 4.07 17.43 18.86 3.61 11.86 7.25 5.05 38.71 6.82 4.53 0.00 12.48 4.68 22.47 0.00 23.91 5.87 6.25 3.50 64 ER12a ExonRegion 0 70.69 110.01 34.54 115.96 66.15 98.96 83.03 52.71 66.05 98.83 108.32 219.28 69.32 109.88 48.91 77.11 63.25 51.95 50.54 97.45 77.65 60.12 74.93 65 E12a_E13a KnownJunction 0 119.58 158.26 43.46 146.17 95.67 85.41 108.82 63.05 56.89 112.90 127.30 247.13 126.62 155.45 94.20 111.34 67.70 32.13 47.62 117.99 92.97 56.82 69.31 66 I12_AR2 ActiveIntronRegion 0 2.12 1.86 2.45 10.37 8.03 40.90 18.19 5.19 6.12 1.94 5.38 10.16 7.14 1.91 0.00 0.00 10.48 11.25 6.37 13.60 6.61 6.25 3.19 67 I12_AR3 ActiveIntronRegion 0 2.12 4.07 2.28 11.88 5.35 44.01 16.83 4.94 6.00 2.29 4.97 8.66 4.69 3.25 0.00 0.00 6.60 18.21 6.37 13.68 6.61 3.27 5.87 68 E13_Aa NovelBoundary 0 3.78 9.87 1.83 21.64 12.31 10.05 14.84 6.98 7.81 18.02 9.58 12.45 13.64 14.42 0.00 0.00 4.58 18.90 0.00 10.87 3.03 11.39 3.16 69 ER13a ExonRegion 0 116.18 250.92 32.26 167.30 134.51 220.34 122.11 72.86 88.11 120.22 178.07 170.53 96.94 148.69 89.69 99.64 102.74 119.44 64.08 183.16 98.85 131.63 112.13 70 E13a_E14a KnownJunction 1 106.02 263.18 42.10 173.34 83.36 212.09 123.88 65.47 83.68 108.28 118.29 291.09 67.69 133.32 87.52 58.70 51.89 148.44 58.54 172.32 73.58 114.51 88.61 71 E14_Aa NovelBoundary 0 3.33 3.35 4.61 5.99 4.16 7.27 3.93 2.55 5.01 6.21 5.37 12.60 6.33 2.24 0.00 0.00 12.62 1.74 0.00 6.52 14.95 13.29 0.00 72 ER14a ExonRegion 0 91.78 255.81 69.43 211.31 155.82 236.53 137.42 101.16 102.57 138.89 79.43 155.36 90.64 60.45 61.77 43.20 49.49 64.06 58.30 138.38 38.41 91.66 49.14 73 ER14b ExonRegion 0 1.59 8.13 3.68 4.09 2.68 14.21 5.30 2.59 1.24 8.32 0.48 5.41 0.00 0.81 2.90 1.49 4.13 0.46 3.19 5.32 0.55 0.00 0.00 74 IG11_SR2 SilentIntergenicRegion 0 10.38 26.43 7.44 11.76 16.54 24.91 10.46 10.96 11.75 14.47 3.30 2.00 5.46 2.70 1.53 1.25 1.11 12.54 4.30 11.99 1.98 1.48 3.12 75 IG11_AR1 ActiveIntergenicRegion 0 18.12 37.41 10.94 27.50 27.16 38.49 11.49 20.23 15.66 21.70 7.59 2.59 3.20 4.54 3.80 2.45 2.74 14.02 7.87 15.52 2.45 3.87 5.20 76 IG11_SR3 SilentIntergenicRegion 0 14.39 43.68 11.65 25.33 37.03 32.77 13.86 15.97 11.79 19.50 5.52 3.95 1.51 4.98 3.09 1.32 1.94 8.82 8.02 18.30 0.56 2.87 2.49 77 IG11_AR2 ActiveIntergenicRegion 0 11.32 38.84 6.23 19.88 44.33 28.87 18.95 13.18 11.45 7.73 4.54 5.43 0.00 2.22 3.07 0.08 1.15 9.41 3.75 7.59 0.00 4.06 0.25 78 IG11_AR3 ActiveIntergenicRegion 0 7.13 24.37 9.66 17.05 23.20 22.82 7.80 16.81 12.59 14.31 3.03 2.62 2.33 0.99 3.24 0.21 2.53 8.37 3.72 6.18 0.67 4.15 0.89