Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 YTHDC1 Gene 0 188.92 199.19 100.71 216.30 190.55 157.32 127.53 106.72 109.64 130.05 153.34 178.49 132.92 159.92 113.64 132.97 143.11 96.80 79.61 99.44 55.94 106.69 74.72 2 355665 Transcript 0 21.34 89.98 46.15 116.10 36.93 56.62 14.22 35.61 78.21 63.23 42.48 37.06 12.66 13.71 15.70 14.87 8.32 25.29 25.88 25.89 0.00 7.41 0.00 3 344157 Transcript 0 77.36 170.76 92.34 202.68 249.68 163.06 166.95 99.77 106.23 126.62 229.38 306.91 177.94 236.20 104.22 252.79 226.36 126.71 116.56 133.79 57.48 169.44 148.79 4 ER1a ExonRegion 1 82.93 60.38 32.14 66.81 103.43 169.18 101.86 25.31 45.83 46.79 88.68 10.69 31.49 108.85 51.24 101.03 150.30 113.83 62.09 78.20 80.90 23.09 89.87 5 E1a_E2a KnownJunction 0 55.34 164.90 51.54 124.59 238.46 173.71 126.92 62.97 69.82 75.80 89.02 49.07 107.79 123.73 67.62 104.42 112.58 124.53 53.65 89.61 56.28 50.89 55.40 6 ER2a ExonRegion 1 168.28 199.33 134.90 307.45 382.05 437.97 420.28 103.15 118.23 142.25 177.73 138.84 273.54 265.56 128.57 134.15 198.67 123.60 93.22 152.57 54.34 102.71 71.34 7 E2a_E3a KnownJunction 1 212.33 242.06 159.40 320.47 229.20 177.57 167.73 126.10 111.46 169.69 285.55 146.30 418.80 192.01 63.29 77.76 285.37 61.64 43.77 124.00 59.80 87.07 27.49 8 ER3a ExonRegion 1 188.50 173.29 150.66 330.56 287.74 170.28 194.10 118.78 127.00 154.35 217.14 388.78 385.99 324.09 102.19 176.57 230.63 134.93 99.16 154.67 61.36 103.34 100.93 9 E3a_E4a KnownJunction 1 156.47 143.07 165.37 325.97 272.41 141.85 167.60 90.40 100.55 118.22 191.10 359.22 257.78 461.77 78.37 189.61 204.49 143.39 148.71 142.41 102.24 96.08 97.83 10 ER4a ExonRegion 1 154.18 171.49 84.22 179.16 211.45 147.46 150.53 66.70 91.23 91.51 188.83 179.48 98.91 262.99 78.00 166.94 222.17 123.20 108.63 129.87 88.90 85.66 88.45 11 E4a_E5a KnownJunction 1 49.05 123.93 108.98 227.24 160.78 109.71 106.17 103.84 179.11 164.29 411.37 267.84 99.51 187.71 65.76 159.79 453.11 100.65 91.11 209.58 200.10 87.20 96.97 12 I4_AR2 ActiveIntronRegion 1 33.44 17.69 8.58 43.07 58.33 5.50 20.92 7.78 16.43 9.18 13.14 0.43 36.58 31.83 7.54 19.62 16.50 4.25 38.22 17.45 11.24 14.38 19.09 13 ER5a ExonRegion 0 65.56 169.17 142.76 308.98 169.88 157.95 147.34 146.88 209.98 208.29 417.03 340.15 172.07 333.94 153.38 323.33 385.98 194.67 153.22 261.44 132.81 288.06 166.02 14 E5a_E6a KnownJunction 0 83.35 188.72 135.54 288.61 242.87 204.31 200.01 136.04 157.00 174.90 273.28 420.59 179.53 360.71 159.47 429.63 303.32 209.84 200.57 168.23 71.79 295.88 247.55 15 E5a_E7a KnownJunction 0 21.34 89.98 46.15 116.10 36.93 56.62 14.22 35.61 78.21 63.23 42.48 37.06 12.66 13.71 15.70 14.87 8.32 25.29 25.88 25.89 0.00 7.41 0.00 16 ER6a ExonRegion 0 103.91 218.16 123.40 276.72 311.48 204.57 186.60 136.55 141.81 166.41 321.83 358.46 243.27 290.63 130.07 325.50 313.95 187.55 178.68 162.57 81.66 239.10 204.97 17 E6a_E7a KnownJunction 0 118.39 273.90 107.42 240.70 439.73 241.57 278.14 123.30 120.75 161.66 320.92 445.20 287.32 292.07 126.09 254.46 286.86 108.65 85.37 201.72 75.74 140.65 141.36 18 ER7a ExonRegion 0 197.73 545.53 158.27 356.50 341.00 344.95 259.43 160.75 201.27 243.37 342.49 489.28 282.24 265.60 140.24 185.87 286.38 136.01 111.55 196.08 67.71 197.93 94.96 19 E7a_E8a KnownJunction 0 383.55 933.98 151.95 378.81 193.55 313.68 246.60 222.79 261.28 264.78 347.09 599.75 286.18 355.88 172.20 208.49 344.65 144.51 154.36 181.40 95.63 226.69 120.87 20 ER8a ExonRegion 0 259.57 700.26 186.08 364.14 312.06 320.49 271.91 194.97 232.65 271.76 389.43 663.40 365.39 380.10 176.07 234.72 325.49 162.99 155.64 207.75 78.95 253.35 145.86 21 E8a_E9a KnownJunction 0 322.43 627.39 192.04 444.87 486.76 432.31 386.60 207.67 251.36 269.00 355.51 579.49 397.21 398.50 306.94 311.20 345.77 202.17 141.18 213.74 77.04 281.31 147.76 22 ER9a ExonRegion 0 175.03 414.37 214.89 474.61 318.44 307.63 248.59 241.65 287.02 341.26 435.61 671.10 383.87 462.02 245.99 393.68 368.61 330.09 269.19 246.01 140.98 317.79 212.16 23 E9_Da NovelBoundary 0 3.04 0.00 32.52 9.32 0.00 0.00 21.77 2.55 2.78 1.42 7.48 31.51 0.00 19.48 0.00 7.78 3.65 0.00 0.00 7.99 0.00 13.04 0.00 24 E9a_E10a KnownJunction 0 245.67 478.86 242.72 520.71 349.15 337.65 211.23 239.05 290.68 343.91 400.84 702.53 322.22 491.50 347.86 581.04 381.86 339.63 328.48 251.90 171.06 301.51 268.47 25 E10_Aa NovelBoundary 0 3.04 5.59 6.45 10.42 4.33 10.79 27.65 6.12 10.07 6.69 16.48 63.02 0.00 2.77 4.45 16.15 12.16 13.43 8.75 14.00 8.40 41.21 7.43 26 ER10a ExonRegion 0 209.04 502.70 225.25 464.84 366.51 269.61 241.07 252.62 320.88 339.83 471.24 575.62 345.90 460.73 284.43 395.22 411.52 384.55 230.40 279.20 211.06 259.09 235.97 27 E10a_E11a KnownJunction 0 432.30 884.65 248.87 530.44 465.87 405.05 407.71 323.42 365.39 436.13 517.82 606.65 380.49 534.17 331.67 501.41 451.89 498.93 270.03 291.59 227.90 360.60 296.81 28 ER11a ExonRegion 0 241.18 605.92 197.72 369.02 355.12 382.96 278.33 226.69 260.44 331.85 446.80 391.65 367.98 442.71 271.07 404.80 401.23 376.96 254.70 265.36 214.25 235.25 224.94 29 E11_Da NovelBoundary 1 61.27 60.91 13.19 57.04 123.60 70.36 76.89 64.49 91.17 41.61 107.66 158.45 171.25 136.62 19.66 104.93 134.83 86.72 17.51 90.63 52.51 83.09 62.83 30 E11a_E12a KnownJunction 0 130.10 404.27 177.67 346.18 200.51 337.82 163.31 208.74 214.06 277.16 268.12 218.02 228.23 373.07 188.64 314.02 284.34 374.49 145.70 208.50 124.54 148.80 154.59 31 I11 Intron 0 56.33 57.14 18.41 65.63 82.05 77.29 73.54 37.91 61.92 48.88 71.42 141.59 116.78 81.42 26.44 55.77 72.30 24.09 22.38 46.25 23.86 106.26 48.55 32 I11_AR1 ActiveIntronRegion 1 56.51 57.32 18.47 65.85 82.30 77.54 73.77 38.03 62.11 49.04 71.65 142.03 117.15 81.68 26.52 55.94 72.53 24.16 22.45 46.40 23.93 106.60 48.71 33 I11 Intron 0 75.16 82.97 13.38 81.79 120.28 94.21 63.12 57.41 55.90 54.62 33.59 129.15 111.78 41.17 18.53 24.25 20.20 6.55 8.18 26.04 4.66 113.50 20.86 34 I11_AR1 ActiveIntronRegion 0 75.27 83.09 13.40 81.91 120.46 94.34 63.22 57.49 55.98 54.70 33.64 129.33 111.94 41.23 18.56 24.28 20.23 6.56 8.19 26.07 4.67 113.66 20.88 35 E12_Aa NovelBoundary 1 121.06 78.93 22.06 135.35 161.12 116.81 105.42 87.78 81.05 60.31 57.80 166.70 62.33 43.32 39.31 30.16 38.24 16.46 18.26 35.35 10.44 106.42 45.93 36 ER12a ExonRegion 0 218.94 344.26 212.74 436.02 365.00 362.65 227.51 237.53 254.48 330.42 402.42 411.87 366.10 467.79 336.23 478.83 396.43 425.58 291.13 252.40 145.87 278.76 229.52 37 E12_Da NovelBoundary 1 11.78 49.14 12.60 73.52 49.07 67.29 45.84 28.26 34.32 44.99 29.01 99.03 6.17 27.49 4.45 15.55 22.63 6.84 4.14 27.48 5.44 112.91 23.05 38 E12a_E13a KnownJunction 0 259.90 310.93 268.56 533.23 375.38 266.95 223.90 277.66 296.47 360.78 399.79 328.46 208.59 469.31 358.74 596.17 383.82 438.37 358.60 236.88 150.86 248.85 289.64 39 I12 Intron 0 25.43 37.08 14.88 71.84 59.46 47.15 36.93 33.12 39.67 36.98 27.29 67.67 56.34 22.24 10.12 14.73 17.75 8.90 4.68 20.83 6.39 93.31 23.57 40 I12_SR1 SilentIntronRegion 0 12.96 45.64 12.85 47.89 43.23 29.23 26.70 19.53 20.27 27.05 17.84 63.29 42.31 18.65 3.16 10.75 15.29 7.64 2.30 17.51 3.53 71.27 15.59 41 I12_AR3 ActiveIntronRegion 0 28.17 37.56 15.80 78.12 64.19 51.56 39.89 36.35 43.95 39.89 29.72 71.20 60.25 23.55 11.47 15.90 18.84 9.45 5.20 22.17 7.04 100.27 25.64 42 E13_Aa NovelBoundary 0 107.80 67.42 51.27 115.97 185.23 96.48 82.36 49.58 46.12 53.99 68.75 89.73 67.04 33.26 20.03 41.10 36.19 22.51 12.71 32.98 16.68 134.90 39.27 43 ER13a ExonRegion 0 265.88 243.26 235.04 440.62 260.27 242.76 203.71 250.95 272.66 336.63 366.10 298.85 234.63 374.34 302.83 510.56 378.80 431.77 330.93 249.17 178.44 255.48 230.49 44 E13_Da NovelBoundary 0 56.16 34.66 25.78 57.57 53.40 44.07 27.25 28.22 30.41 24.15 29.59 76.83 34.41 17.01 8.90 28.11 51.15 8.83 0.00 13.81 14.46 110.16 22.71 45 E13a_E14a KnownJunction 0 386.22 279.23 155.41 321.87 265.11 294.26 246.25 189.60 196.58 249.28 344.67 204.67 235.54 341.58 312.13 437.58 365.40 289.18 285.37 246.91 190.21 246.10 176.62 46 I13 Intron 0 26.99 16.21 9.70 24.82 22.74 12.66 16.18 15.05 22.49 24.53 18.48 62.64 21.40 9.74 12.96 22.11 29.81 6.85 3.38 12.43 8.20 61.98 23.40 47 I13_AR1 ActiveIntronRegion 1 27.56 16.55 9.89 25.34 23.23 12.93 16.51 15.37 22.94 25.04 18.86 63.79 21.80 9.95 13.24 22.58 30.41 7.00 3.46 12.70 8.35 63.28 23.87 48 E14_Aa NovelBoundary 0 189.29 131.29 68.24 163.38 135.06 127.48 129.40 91.14 68.46 81.23 227.32 141.50 177.10 216.96 159.47 181.58 136.61 94.26 84.90 102.20 57.14 244.26 112.59 49 ER14a ExonRegion 0 452.67 333.66 261.86 526.58 357.55 382.90 251.29 296.13 292.54 375.78 495.02 350.36 279.53 473.02 324.65 439.35 438.28 400.55 237.31 272.02 203.57 207.62 201.67 50 E14_Da NovelBoundary 0 13.63 14.41 6.62 47.98 10.53 27.60 23.41 21.60 13.51 19.85 22.48 18.46 0.00 16.95 0.00 3.25 4.77 8.87 3.76 8.18 11.12 92.59 23.05 51 E14a_E15a KnownJunction 0 728.28 496.16 345.61 719.09 527.00 533.33 350.87 334.18 349.48 447.76 575.94 432.29 286.99 544.06 332.78 439.97 570.08 391.20 258.55 345.79 213.13 201.83 215.71 52 I14 Intron 0 3.00 9.60 4.31 19.19 13.90 10.39 13.75 7.30 7.82 11.30 9.13 13.47 1.82 2.57 2.90 5.61 7.79 6.52 0.00 3.01 7.28 37.39 18.03 53 I14_AR1 ActiveIntronRegion 0 3.05 9.75 4.39 19.54 14.16 10.59 14.01 7.44 7.97 11.51 9.30 13.72 1.86 2.62 2.90 5.72 7.94 6.64 0.00 3.07 7.42 38.09 18.37 54 E15_Aa NovelBoundary 0 16.23 5.06 3.67 43.58 38.46 32.59 28.66 17.37 31.05 30.84 16.69 50.12 13.64 19.01 0.00 22.56 8.13 9.78 8.09 20.13 12.54 62.58 19.04 55 ER15a ExonRegion 0 620.01 461.72 285.74 642.26 503.17 457.23 298.21 349.15 364.95 430.76 493.90 505.17 422.18 528.28 361.28 436.90 517.87 375.56 244.77 372.14 227.54 308.92 239.13 56 E15a_E16a KnownJunction 0 594.18 401.38 243.60 648.74 368.85 407.66 266.83 357.22 370.08 407.66 351.62 465.60 424.32 473.31 325.36 315.64 333.15 259.95 182.12 308.72 192.87 201.34 193.52 57 I15 Intron 0 12.72 10.99 3.78 20.92 23.24 14.07 14.84 12.88 14.03 12.95 10.15 25.18 17.96 10.02 3.91 13.51 6.17 10.73 5.15 8.27 4.90 38.09 9.05 58 I15_SR1 SilentIntronRegion 0 6.61 8.24 2.63 16.01 17.76 11.80 11.40 9.94 9.60 8.80 5.74 20.50 14.04 8.42 3.07 10.72 3.43 5.74 2.55 6.45 3.22 28.86 3.71 59 I15_AR2 ActiveIntronRegion 0 34.09 22.29 7.76 42.24 46.66 24.20 27.84 24.77 30.86 29.44 24.64 39.57 33.14 13.55 7.05 25.90 14.77 25.71 14.25 14.27 8.86 72.68 25.62 60 E16_Aa NovelBoundary 0 52.75 44.20 9.85 42.15 71.90 49.06 41.25 27.15 40.13 24.85 29.27 56.72 48.05 25.78 15.70 20.51 35.25 19.52 26.73 23.20 25.14 55.11 31.50 61 ER16a ExonRegion 0 759.23 558.19 280.66 618.35 453.57 502.65 291.71 296.97 329.26 390.49 405.99 362.17 418.59 464.83 353.35 513.52 409.26 353.66 277.46 335.35 216.60 323.78 308.70 62 E16_Da NovelBoundary 0 30.45 34.53 15.11 54.21 72.84 42.59 40.67 23.58 66.00 21.97 48.75 24.16 60.22 19.07 20.03 52.38 46.66 32.46 13.37 35.99 27.43 47.64 19.55 63 E16a_E17a KnownJunction 0 895.20 847.02 238.70 557.97 586.16 594.37 486.54 262.79 314.32 358.88 414.42 419.99 354.20 537.29 356.02 412.80 323.61 340.91 308.06 238.86 195.22 236.79 216.57 64 I16 Intron 0 63.96 41.60 25.88 56.45 73.02 48.95 45.14 40.51 42.43 32.05 25.34 57.55 49.45 23.53 18.22 18.91 18.82 11.58 8.74 16.84 6.79 55.57 14.55 65 I16_AR1 ActiveIntronRegion 0 36.20 49.30 16.89 47.27 69.36 40.72 43.44 35.11 38.10 30.07 22.94 62.12 51.28 22.25 13.24 16.11 18.10 11.58 8.60 14.44 6.76 53.33 14.60 66 I16_SR1 SilentIntronRegion 0 48.23 33.15 38.32 73.77 80.32 49.88 43.57 51.11 60.96 41.14 20.05 73.27 66.87 25.87 19.81 21.93 10.85 14.15 10.03 17.48 2.28 66.34 13.44 67 I16_AR2 ActiveIntronRegion 0 121.45 29.69 39.24 68.81 78.00 64.41 48.98 47.67 45.19 33.16 31.55 44.35 40.90 25.32 27.23 23.36 22.65 10.84 8.65 21.23 8.25 56.76 14.83 68 E17_Aa NovelBoundary 0 402.96 103.86 47.34 102.15 172.24 75.64 59.44 50.73 50.06 31.43 14.16 25.21 19.80 24.72 32.76 11.02 12.34 22.88 23.53 9.14 21.81 35.27 0.00 69 ER17a ExonRegion 0 664.49 557.70 282.16 621.02 537.64 382.04 308.74 319.76 271.43 338.20 299.75 376.90 249.72 259.28 330.67 233.49 230.07 118.24 136.54 181.06 81.21 280.45 124.86 70 E17_Da KnownBoundary 0 31.56 36.84 10.26 19.94 32.68 8.69 21.86 18.24 35.30 25.22 7.74 12.60 12.82 10.24 15.33 0.00 0.00 0.00 7.81 26.08 5.00 16.35 0.00 71 ER17b ExonRegion 0 3.81 2.25 3.01 4.68 4.64 1.78 3.04 3.20 5.38 3.51 1.50 3.40 1.64 1.38 1.27 1.55 1.32 0.80 1.61 2.63 0.73 2.13 1.28