Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL590235.1 Gene 0 6.67 20.65 20.67 19.20 9.37 16.48 22.10 13.53 30.29 24.93 9.70 2.59 6.95 7.95 12.99 13.53 10.79 50.61 33.83 32.28 9.51 2.92 8.57 2 500728 Transcript 0 2.41 8.23 7.50 7.35 4.43 5.96 8.55 5.90 11.66 9.75 3.54 2.79 6.30 4.06 7.19 6.94 3.90 18.95 12.23 12.48 4.22 1.05 3.10 3 ER1a ExonRegion 0 0.00 0.00 0.11 0.00 0.00 0.00 0.08 0.00 0.00 0.24 0.11 0.00 0.00 1.62 8.19 0.00 0.00 0.49 0.00 0.06 0.06 0.00 0.00 4 E1_Da NovelBoundary 0 14.67 6.51 49.29 37.56 21.48 7.67 19.17 30.97 48.38 40.40 2.68 0.00 6.17 0.00 0.00 11.62 0.00 33.41 0.00 10.16 3.09 0.00 8.71 5 E1a_E2a KnownJunction 0 0.00 2.30 0.00 1.23 3.14 0.00 1.63 3.04 2.14 1.99 0.00 5.55 11.36 2.06 0.00 6.15 0.00 1.53 0.00 2.36 2.29 0.00 0.00 6 I1_AR2 ActiveIntronRegion 0 2.65 4.45 7.88 5.46 1.50 6.16 11.09 5.36 5.53 13.15 0.00 0.00 0.00 0.11 0.00 0.00 0.28 27.47 19.75 15.58 4.52 1.92 3.81 7 I1_AR3 ActiveIntronRegion 0 0.00 5.87 10.28 2.33 0.00 7.54 11.06 8.00 11.12 15.65 0.00 0.00 0.00 0.00 0.00 0.00 0.37 26.97 23.53 10.60 4.66 0.00 6.77 8 Ix_AR3 ActiveIntronRegion 0 0.99 2.22 1.57 1.19 0.47 0.00 16.91 0.00 0.00 1.96 0.43 1.11 1.81 0.86 0.00 0.00 2.70 0.44 8.12 4.04 5.18 2.10 4.71 9 Ix_SR1 SilentIntronRegion 0 2.12 1.88 2.91 4.50 2.38 2.85 10.61 5.58 4.14 12.82 2.12 0.78 1.69 1.82 0.30 0.47 1.44 20.30 6.85 7.38 10.31 7.81 12.20 10 Ix_AR1 ActiveIntronRegion 0 0.00 4.32 5.74 16.75 5.95 3.46 8.83 10.65 5.99 12.30 4.94 1.68 2.74 3.52 0.69 0.00 0.00 23.82 9.14 4.59 14.92 32.02 24.23 11 Ix_AR2 ActiveIntronRegion 0 0.00 1.60 5.26 4.61 0.00 0.00 5.85 5.08 0.00 2.98 1.34 4.86 4.04 0.32 1.96 0.00 0.00 12.22 4.75 0.00 7.02 17.60 8.40 12 Ix_AR3 ActiveIntronRegion 0 0.99 2.76 6.28 6.89 1.52 3.70 5.70 5.63 2.27 11.05 3.42 0.24 2.71 3.25 0.77 0.00 0.00 23.55 7.89 5.84 14.84 14.24 17.86 13 Ix_SR3 SilentIntronRegion 0 2.22 3.78 9.45 7.71 3.68 4.43 10.63 7.65 5.01 12.91 2.76 0.42 2.25 2.38 0.52 1.39 2.31 21.34 8.07 4.75 15.63 15.13 22.63 14 Ix_AR4 ActiveIntronRegion 0 7.80 10.45 8.71 18.38 17.36 13.09 37.20 10.63 6.41 23.32 1.38 4.75 9.51 2.34 0.82 0.59 0.66 14.20 6.27 11.56 11.76 31.84 20.52 15 Ix_SR4 SilentIntronRegion 0 6.92 14.92 9.88 15.21 22.49 12.13 41.75 7.97 5.56 27.08 3.35 4.90 10.32 1.85 1.08 0.52 0.77 8.09 4.08 9.54 7.26 41.53 16.12 16 Ix_AR5 ActiveIntronRegion 0 3.13 11.65 0.75 9.38 10.91 5.18 18.41 7.71 1.71 12.04 0.00 2.66 3.79 0.66 0.00 0.00 2.16 6.50 0.00 4.34 6.02 9.30 10.90 17 Ix_AR6 ActiveIntronRegion 0 0.00 4.51 0.00 1.13 1.48 3.05 27.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 0.00 2.36 0.00 0.00 1.63 18 Ix_SR7 SilentIntronRegion 0 2.09 2.76 2.42 2.08 0.00 2.43 5.58 3.80 5.45 6.38 0.00 0.00 1.28 0.00 0.00 0.00 1.09 18.84 4.32 20.31 6.18 0.78 5.43 19 Ix Intron 0 11.50 38.85 24.20 48.79 16.56 28.78 24.16 18.89 27.58 44.85 1.13 0.73 0.81 1.87 0.55 0.58 2.98 60.49 31.58 38.21 18.20 16.09 22.40 20 Ix_AR1 ActiveIntronRegion 0 13.67 50.18 23.77 46.60 20.75 32.42 31.27 21.86 24.45 45.56 1.09 0.75 1.26 2.39 0.66 1.05 4.35 57.17 29.06 45.55 20.75 20.99 21.61 21 Ix_SR1 SilentIntronRegion 0 11.05 49.18 32.19 47.29 12.16 33.06 14.94 25.37 37.65 52.07 1.63 0.00 0.00 1.56 0.00 0.00 3.26 33.74 28.21 30.48 18.35 16.18 21.40 22 Ix_AR2 ActiveIntronRegion 0 10.99 36.52 32.71 50.12 14.80 31.87 22.85 20.78 37.73 53.92 0.31 0.80 1.07 1.82 1.23 0.27 2.67 88.74 39.91 53.77 19.42 16.33 25.02 23 Ix_SR2 SilentIntronRegion 0 9.92 31.75 17.87 61.29 17.78 22.47 21.23 15.87 22.92 38.78 2.47 0.89 0.00 1.19 0.00 0.37 2.63 46.75 30.42 19.23 15.15 12.41 22.77 24 Ix_AR3 ActiveIntronRegion 0 9.70 24.40 16.95 36.58 9.94 22.51 16.64 11.51 21.01 34.16 0.84 0.55 0.60 1.72 0.00 0.47 0.84 43.96 25.56 21.39 14.39 9.52 19.63 25 Ix Intron 0 6.35 23.46 17.31 34.32 6.20 10.23 14.82 8.62 12.39 27.64 0.25 0.15 0.73 0.99 0.26 0.00 0.42 42.58 16.26 20.44 14.17 12.96 14.36 26 Ix_SR1 SilentIntronRegion 0 0.92 10.63 2.68 21.93 0.00 12.46 3.65 1.73 2.75 6.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.65 16.83 8.23 7.40 6.49 17.68 27 Ix_SR2 SilentIntronRegion 0 8.10 28.29 19.81 37.20 8.15 12.65 18.38 9.02 13.94 28.15 0.27 0.25 0.67 1.48 0.29 0.00 0.45 41.64 16.71 20.25 14.65 14.98 14.82 28 Ix_AR1 ActiveIntronRegion 0 4.04 16.89 15.02 31.03 3.66 5.58 10.16 8.90 11.05 29.78 0.24 0.00 0.95 0.29 0.25 0.00 0.41 46.75 15.42 22.48 14.26 10.32 13.21 29 Ix Intron 0 2.94 5.64 5.30 10.22 4.14 7.16 8.46 8.47 22.68 19.24 0.06 0.54 0.50 0.84 0.08 0.10 1.17 19.94 10.89 8.72 4.76 3.76 4.07 30 Ix_SR1 SilentIntronRegion 0 2.97 5.51 5.41 9.66 4.57 7.53 8.60 8.75 23.91 19.60 0.07 0.52 0.59 0.80 0.04 0.11 1.26 21.15 11.38 8.95 4.42 3.89 3.88 31 Ix_AR2 ActiveIntronRegion 0 0.00 2.76 4.35 12.45 0.00 1.35 8.81 3.39 1.67 2.57 0.00 0.00 2.59 1.80 0.00 0.00 0.00 12.79 0.00 7.56 10.64 0.44 1.12 32 Ix Intron 0 8.35 13.90 7.92 14.15 7.03 8.68 15.67 10.83 9.68 9.88 1.52 0.94 2.65 1.44 0.27 0.39 0.87 17.27 11.72 19.30 4.92 7.67 5.79 33 Ix_AR1 ActiveIntronRegion 0 8.39 13.97 7.96 14.22 7.07 8.72 15.75 10.89 9.73 9.94 1.53 0.94 2.66 1.45 0.26 0.39 0.87 17.36 11.78 19.39 4.95 7.71 5.82 34 Ix Intron 0 12.10 14.44 12.80 21.88 6.68 16.99 17.61 15.66 23.81 23.24 1.57 0.21 0.58 1.59 0.94 0.36 0.89 65.64 16.87 29.07 11.14 10.03 11.22 35 Ix_AR1 ActiveIntronRegion 0 7.72 13.37 9.76 24.05 7.23 15.47 14.92 15.09 18.73 21.46 0.74 0.00 0.00 1.62 0.55 0.00 0.00 43.56 13.68 15.24 8.52 10.31 9.77 36 Ix_SR1 SilentIntronRegion 0 12.94 14.66 13.39 21.50 6.59 17.30 18.14 15.78 24.80 23.61 1.73 0.26 0.69 1.59 1.01 0.43 1.06 69.86 17.49 31.69 11.64 9.99 11.51 37 I1 Intron 0 0.66 1.98 7.62 2.80 1.85 4.54 2.28 2.83 16.45 23.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.95 4.10 7.01 0.35 1.31 0.18 38 I1_SR1 SilentIntronRegion 0 0.66 1.98 7.62 2.80 1.85 4.55 2.29 2.83 16.46 23.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.96 4.10 7.01 0.35 1.31 0.18 39 Ix Intron 0 0.00 0.00 7.24 5.75 4.55 7.79 4.13 7.30 17.21 64.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.79 9.91 7.84 1.25 1.77 0.00 40 Ix_SR1 SilentIntronRegion 0 0.00 0.00 7.32 5.82 4.60 7.88 4.17 7.38 17.40 65.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.94 10.02 7.92 1.26 1.79 0.00 41 Ix Intron 0 0.80 3.06 9.28 8.03 2.52 11.73 3.24 7.27 14.89 59.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.68 16.78 4.80 0.83 0.78 0.55 42 Ix_SR1 SilentIntronRegion 0 0.80 3.08 9.35 8.09 2.54 11.82 3.26 7.33 15.01 60.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.75 16.91 4.84 0.84 0.79 0.56 43 Ix Intron 0 1.00 4.82 6.75 9.43 5.07 16.17 3.01 9.03 24.25 58.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.37 11.17 12.31 0.63 1.78 0.28 44 Ix_AR1 ActiveIntronRegion 0 1.01 4.84 6.77 9.47 5.09 16.22 3.02 9.07 24.34 58.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.42 11.21 12.36 0.63 1.78 0.28 45 Ix Intron 0 1.22 3.78 17.46 6.65 3.55 7.87 3.69 6.73 21.76 52.74 0.00 0.00 0.00 0.06 0.00 0.00 0.00 18.29 10.15 8.85 1.56 1.01 0.65 46 Ix_SR1 SilentIntronRegion 0 1.22 3.79 17.51 6.67 3.56 7.90 3.70 6.75 21.81 52.88 0.00 0.00 0.00 0.06 0.00 0.00 0.00 18.34 10.18 8.88 1.57 1.02 0.65 47 I1 Intron 0 0.92 2.83 2.60 2.04 5.91 4.50 1.61 4.06 10.82 29.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 2.88 2.82 0.14 0.18 0.00 48 I1_SR1 SilentIntronRegion 0 0.92 2.83 2.61 2.04 5.91 4.51 1.61 4.06 10.82 29.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.26 2.89 2.82 0.14 0.18 0.00 49 Ix_AR2 ActiveIntronRegion 0 0.00 0.00 2.15 0.00 0.00 0.95 1.49 1.35 14.27 6.00 0.00 0.00 0.00 1.68 0.00 3.47 0.37 0.39 1.10 1.21 0.00 0.00 0.00 50 I1 Intron 0 4.96 7.17 11.99 7.28 4.86 7.74 8.27 8.35 16.62 14.30 2.57 0.92 1.37 2.49 5.74 6.24 3.42 22.22 13.29 9.45 2.96 1.94 3.18 51 I1_AR4 ActiveIntronRegion 0 20.46 27.20 40.03 29.27 12.70 20.73 25.14 27.56 46.70 43.51 9.51 1.82 3.55 5.87 14.26 21.80 9.97 63.88 33.26 27.91 6.85 7.91 8.62 52 I1_SR4 SilentIntronRegion 0 5.44 12.10 18.33 10.05 11.71 17.54 15.37 11.52 25.66 20.25 4.78 1.54 2.66 6.36 9.42 10.46 4.40 42.29 24.70 13.66 5.56 2.97 4.61 53 E2_Aa NovelBoundary 0 27.63 30.32 30.72 20.31 20.12 7.15 66.16 28.09 68.34 37.88 12.42 12.60 6.82 12.13 4.45 11.11 9.16 109.15 68.52 50.69 11.98 5.33 8.37 54 ER2a ExonRegion 0 7.23 22.39 22.41 20.82 10.16 17.87 23.95 14.67 32.85 27.02 10.51 2.80 7.54 8.48 13.39 14.67 11.70 54.84 36.68 35.00 10.31 3.16 9.29 55 IG6 Intergenic 0 9.72 20.70 23.65 19.15 13.14 24.28 32.09 25.67 72.38 53.16 16.78 6.87 5.65 16.29 16.24 23.38 22.91 104.07 61.10 49.30 31.28 16.02 14.01 56 IG6_AR1 ActiveIntergenicRegion 0 33.86 18.30 0.00 0.00 10.70 11.00 2.65 0.00 0.00 0.00 5.80 0.00 0.00 6.50 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 IG6_SR2 SilentIntergenicRegion 0 16.93 10.21 0.00 0.00 5.35 3.59 1.32 0.00 0.00 0.00 5.92 4.51 0.00 6.63 6.34 0.00 0.00 0.00 3.32 0.00 0.00 0.00 0.00 58 IG6_AR2 ActiveIntergenicRegion 0 14.05 33.64 35.84 28.05 17.32 37.81 51.10 35.27 97.61 72.97 21.46 9.36 10.12 17.86 23.50 28.83 30.24 142.66 91.69 69.92 38.57 23.65 19.83 59 IG6_SR3 SilentIntergenicRegion 0 4.42 7.60 13.77 10.07 8.15 16.60 14.31 15.01 57.52 36.47 12.29 3.22 2.57 14.98 11.42 17.54 21.89 68.73 41.24 31.75 22.26 10.08 14.84 60 IG6_AR3 ActiveIntergenicRegion 0 0.00 11.52 11.03 16.35 8.03 12.84 14.34 15.56 57.64 39.38 9.34 4.33 0.00 18.41 10.15 25.76 22.56 54.51 8.49 32.98 26.08 10.42 11.75 61 IG6_SR4 SilentIntergenicRegion 0 0.00 6.89 7.44 10.21 5.87 5.95 8.85 4.26 30.28 18.10 4.48 3.06 0.00 12.99 6.86 17.91 12.88 32.40 4.12 23.61 11.88 4.22 2.15 62 IG6_AR4 ActiveIntergenicRegion 0 6.03 13.40 16.38 11.87 10.65 6.00 16.40 13.90 34.81 29.85 10.94 5.07 0.00 10.48 12.97 15.69 8.48 36.23 12.52 33.32 23.60 6.52 3.08 63 IG6_SR5 SilentIntergenicRegion 0 5.90 9.53 21.13 11.42 13.77 20.56 29.87 32.56 64.53 48.68 23.32 4.76 0.00 14.22 13.98 26.46 21.75 117.47 39.79 43.32 30.96 13.25 10.83 64 IG6_AR5 ActiveIntergenicRegion 0 6.83 11.22 13.78 15.84 11.30 12.96 18.81 23.95 61.35 46.57 14.54 6.68 3.10 18.89 8.09 23.27 17.28 98.83 49.47 36.71 34.58 12.23 7.98