Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF595 Gene 0 48.59 105.90 59.99 46.08 115.63 316.29 224.25 60.93 29.49 81.26 0.21 1.94 1.51 1.75 2.81 0.90 4.41 202.23 65.31 87.24 12.88 20.35 13.97 2 339368 Transcript 0 15.09 282.57 199.33 100.52 397.92 1075.27 741.19 213.26 22.17 310.59 0.03 0.32 0.25 0.29 0.46 0.15 7.78 1068.65 246.91 338.86 23.04 12.15 14.73 3 ER1a ExonRegion 0 16.41 426.76 77.52 24.08 330.36 1650.85 840.03 60.40 4.05 100.18 0.00 0.00 0.00 0.00 0.00 0.00 4.03 380.33 137.29 152.15 17.70 6.85 5.34 4 E1_Da NovelBoundary 0 0.00 12.76 50.97 22.54 0.00 2.33 7.24 9.28 2.46 14.99 6.48 0.00 0.00 0.00 0.00 0.00 0.00 29.43 0.00 61.68 8.03 0.00 0.00 5 E1a_E2a KnownJunction 0 3.56 175.89 293.84 83.31 103.14 135.15 130.32 303.17 9.81 406.21 0.00 0.00 0.00 0.00 0.00 0.00 17.39 965.32 277.09 418.47 45.65 11.21 15.88 6 E1a_E4a NovelJunction 0 0.00 0.00 0.00 3.43 3.99 0.00 1.85 4.11 3.27 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.45 0.00 0.00 7 I1 Intron 0 2.82 37.97 34.48 29.41 11.57 18.87 45.03 12.70 2.59 20.83 0.09 0.26 0.06 0.10 0.29 0.04 0.54 76.34 11.79 47.73 2.38 1.45 2.39 8 I1_AR1 ActiveIntronRegion 0 2.24 33.82 56.16 33.77 9.07 15.40 27.69 16.47 2.87 28.51 0.21 0.40 0.00 0.07 0.16 0.00 0.37 116.51 16.49 53.96 3.19 1.04 3.10 9 I1_SR1 SilentIntronRegion 0 3.04 39.51 26.63 27.85 12.48 20.14 51.37 11.34 2.49 18.05 0.04 0.22 0.08 0.11 0.34 0.06 0.60 61.81 10.10 45.50 2.09 1.60 2.14 10 E2_Aa NovelBoundary 0 3.70 73.61 17.12 19.24 8.32 16.81 54.32 6.57 4.34 18.56 2.47 0.00 0.00 0.00 0.00 0.00 0.00 57.66 25.41 51.77 3.09 0.00 4.35 11 ER2a ExonRegion 0 3.95 190.63 382.60 172.11 136.61 143.02 129.19 384.37 26.50 586.14 0.00 0.00 0.00 0.00 0.00 0.00 9.54 2233.22 514.93 648.41 34.86 18.14 20.12 12 E2a_E3a KnownJunction 0 6.67 280.21 304.96 200.37 541.00 454.17 266.43 321.53 26.36 494.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2060.19 313.61 559.59 19.65 10.90 21.17 13 I2 Intron 0 0.22 24.45 8.71 13.26 11.93 11.98 41.31 9.62 1.72 7.80 0.00 0.00 0.00 0.00 0.00 0.00 0.34 6.01 5.63 20.73 0.46 0.00 0.30 14 I2_SR1 SilentIntronRegion 0 0.22 24.60 8.76 13.34 12.00 12.05 41.57 9.67 1.73 7.84 0.00 0.00 0.00 0.00 0.00 0.00 0.34 6.05 5.66 20.86 0.46 0.00 0.31 15 E3_Aa NovelBoundary 0 0.00 19.14 3.61 16.95 12.48 5.39 18.68 23.54 5.61 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.51 9.60 22.82 0.00 0.00 0.00 16 ER3a ExonRegion 0 11.51 792.65 289.66 169.21 1624.62 5041.09 3752.19 367.73 32.86 532.88 0.00 0.00 0.00 0.00 0.00 0.00 10.56 1777.13 424.52 525.86 23.76 10.37 22.36 17 E3_Da NovelBoundary 0 3.70 100.38 90.98 25.90 39.56 80.75 228.98 27.07 8.88 67.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 134.81 21.65 137.74 5.13 0.00 0.00 18 E3a_E4a KnownJunction 0 9.19 57.49 13.31 18.28 7.39 46.11 17.22 23.12 24.45 17.59 0.00 0.00 0.00 0.00 0.00 0.00 8.98 38.63 37.18 30.23 8.65 5.88 4.35 19 I3 Intron 0 5.15 64.38 54.75 35.55 44.49 56.82 129.66 24.24 2.86 47.43 0.62 0.57 0.75 0.11 0.27 0.71 1.58 61.96 17.91 89.85 1.32 1.08 2.58 20 I3_AR1 ActiveIntronRegion 0 3.05 70.40 58.28 27.64 30.93 58.82 104.38 22.93 1.16 35.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 112.17 32.37 104.16 4.96 1.69 3.63 21 I3_AR2 ActiveIntronRegion 0 7.73 89.04 86.15 57.06 35.48 82.00 160.34 39.64 1.80 67.44 0.00 0.00 0.00 0.00 0.00 0.00 2.73 165.33 38.02 176.60 0.00 3.08 3.51 22 I3_AR3 ActiveIntronRegion 0 8.69 50.52 53.21 57.03 55.49 50.77 156.58 43.12 1.17 72.68 0.00 0.00 0.00 0.00 0.00 0.00 4.69 144.42 33.87 149.16 1.39 2.08 1.70 23 I3_AR4 ActiveIntronRegion 0 9.08 54.10 55.82 54.77 49.78 73.45 181.31 37.48 1.95 72.50 0.00 0.00 0.00 0.00 0.00 0.00 3.04 119.33 20.37 151.90 7.42 0.44 1.55 24 I3_SR1 SilentIntronRegion 0 4.97 63.61 53.22 34.09 45.37 55.20 127.72 22.87 3.08 46.00 0.71 0.66 0.87 0.12 0.32 0.82 1.52 50.96 15.80 82.04 0.94 0.96 2.52 25 I3 Intron 0 2.81 84.69 18.79 11.74 14.39 16.12 24.49 14.35 3.42 21.33 0.00 0.15 0.23 0.04 0.00 0.04 0.23 54.79 17.62 39.97 1.32 2.27 2.34 26 I3_AR1 ActiveIntronRegion 0 11.57 1759.35 344.88 183.83 247.22 300.04 346.96 255.76 2.23 391.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1117.39 331.94 689.78 2.68 4.43 2.67 27 E4_Aa NovelBoundary 0 7.11 13.94 5.97 8.46 12.56 4.94 14.49 7.39 11.55 8.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.88 4.80 10.67 0.00 18.19 4.35 28 ER4a ExonRegion 0 54.38 54.37 33.44 36.27 42.32 56.49 52.93 32.50 31.14 36.68 0.24 2.24 1.74 2.02 3.24 1.04 3.94 25.70 23.73 37.32 11.02 21.72 13.89 29 IG2_AR2 ActiveIntergenicRegion 0 12.08 12.41 4.39 13.53 12.70 15.91 11.71 5.59 11.06 14.90 16.16 1.31 2.02 2.76 7.71 15.23 8.51 57.21 16.85 24.73 8.26 2.84 5.02 30 IG2_AR3 ActiveIntergenicRegion 0 7.02 22.82 6.98 35.73 22.52 21.98 42.20 13.81 8.45 23.53 7.39 13.96 27.37 2.39 5.31 4.55 5.89 10.11 11.37 32.01 0.56 6.91 4.49 31 IG2_SR4 SilentIntergenicRegion 0 6.41 20.42 7.57 48.23 26.44 43.84 46.42 27.51 16.43 36.23 21.87 15.95 20.18 4.32 9.71 15.63 13.15 60.64 27.41 50.88 4.21 5.31 9.83