Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC149 Gene 0 7.02 15.39 9.06 14.34 8.35 25.86 6.52 9.34 28.68 16.43 0.10 0.46 0.45 0.57 0.73 0.17 0.12 15.02 8.40 19.92 26.77 24.54 24.95 2 324309 Transcript 0 1.37 1.59 0.73 1.47 0.95 2.11 1.08 0.96 4.62 1.19 0.05 0.20 0.23 0.25 0.38 0.09 0.06 1.43 1.11 3.49 2.72 2.84 5.20 3 389609 Transcript 0 27.04 29.47 5.91 5.26 25.30 0.00 4.06 16.02 10.42 9.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.38 12.85 75.74 67.42 42.77 4 382116 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 428116 Transcript 0 0.03 0.00 0.01 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.75 0.00 0.86 8.41 2.84 3.63 6 389613 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 3.30 8 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Aa NovelBoundary 0 0.00 2.63 0.00 0.00 0.00 24.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.98 3.67 5.75 2.35 2.88 15.79 10 ER2a ExonRegion 0 2.58 6.67 2.24 1.61 6.63 19.67 2.59 1.51 11.56 10.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.64 4.22 6.67 24.10 5.46 5.81 11 E2a_E4a KnownJunction 0 6.67 2.50 4.52 6.26 0.00 0.00 2.25 6.78 26.48 21.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.80 4.42 6.14 35.65 16.35 10.16 12 ER3a ExonRegion 0 0.07 0.00 0.02 0.00 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 0.00 1.72 7.87 3.11 3.17 13 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.96 2.57 4.10 14 ER4a ExonRegion 0 1.89 12.19 11.27 16.18 3.73 33.11 4.52 11.68 59.42 36.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.46 9.12 31.40 54.14 41.18 42.00 15 E4a_E5a KnownJunction 0 13.34 15.79 13.54 36.06 29.29 109.08 5.30 20.00 79.19 49.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.71 18.07 46.60 56.22 62.89 34.40 16 ER5a ExonRegion 0 13.68 13.66 14.89 38.23 26.48 92.40 6.93 23.62 85.76 51.32 0.00 0.00 0.00 1.33 0.00 0.00 0.00 28.47 23.44 50.90 79.11 74.21 39.83 17 E5a_E8a KnownJunction 0 9.56 17.96 9.73 32.86 11.38 61.04 10.91 24.56 68.43 41.10 0.00 0.00 0.00 2.41 0.00 0.00 0.00 22.34 21.27 63.28 82.47 80.89 52.75 18 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER8a ExonRegion 0 5.41 20.49 12.62 33.18 19.89 76.68 9.93 19.94 74.80 51.61 0.00 1.08 0.00 0.69 0.00 0.00 0.00 26.59 18.91 56.50 90.58 82.41 73.12 21 E8a_E9a KnownJunction 0 10.37 16.90 16.47 49.51 7.98 82.40 7.86 28.88 86.46 43.22 0.00 6.30 0.00 0.00 0.00 0.00 0.00 51.36 31.91 47.43 109.28 53.21 85.53 22 E9_Aa NovelBoundary 0 10.59 12.56 6.74 6.99 0.00 8.06 2.21 1.52 5.35 2.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 2.47 3.12 11.27 23 ER9a ExonRegion 0 9.26 18.30 13.62 36.84 10.73 54.18 7.50 31.27 71.34 46.43 0.00 0.56 0.00 0.25 0.00 0.00 0.00 67.70 31.25 47.64 94.01 80.26 60.24 24 E9_Da NovelBoundary 0 0.00 0.00 4.70 5.36 0.00 0.00 2.25 1.81 8.56 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.83 0.00 5.94 13.65 3.12 4.35 25 E9a_E10a KnownJunction 0 15.48 23.88 10.44 38.79 18.59 36.06 1.77 34.26 85.56 47.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53.06 20.61 55.54 101.44 79.73 83.40 26 E10_Aa NovelBoundary 0 0.00 0.00 2.75 3.46 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.11 0.00 2.56 0.00 0.00 16.13 27 ER10a ExonRegion 0 15.07 35.16 23.18 34.83 22.29 60.04 12.90 25.28 86.43 50.95 0.00 1.05 0.00 0.17 0.00 0.00 0.00 53.05 20.81 50.33 98.82 77.54 77.17 28 E10a_E11a KnownJunction 0 13.48 38.87 41.25 59.57 30.81 73.08 6.40 18.28 85.59 42.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.74 13.93 54.01 57.76 87.14 67.69 29 ER11a ExonRegion 0 24.47 44.77 34.04 44.75 23.90 74.78 20.86 35.00 101.62 53.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.39 43.37 56.25 110.55 99.89 86.09 30 E11a_E12a KnownJunction 0 20.67 65.78 46.27 38.76 28.27 79.50 25.48 35.61 107.84 59.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.78 35.39 61.49 119.54 93.20 88.27 31 ER12a ExonRegion 0 23.48 71.92 43.81 44.62 16.02 68.93 16.26 33.02 92.55 58.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.85 13.53 52.27 83.66 84.93 87.86 32 E12a_E13a KnownJunction 0 14.30 77.82 42.28 58.33 25.89 60.53 24.82 39.88 79.86 53.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.46 11.67 46.34 118.49 107.10 85.11 33 ER13a ExonRegion 0 21.94 59.75 43.83 52.26 32.15 91.58 26.94 29.55 93.50 66.74 0.00 0.00 0.00 0.29 0.00 0.00 0.00 49.69 39.74 52.93 97.62 119.58 86.16 34 E13_Da KnownBoundary 0 7.26 2.89 4.55 5.23 0.00 0.00 1.85 2.26 15.28 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 5.69 3.15 2.39 7.85 35 E13a_E14a KnownJunction 0 25.56 71.11 58.75 58.77 34.55 108.29 27.38 39.51 89.99 72.93 0.00 0.00 0.00 2.47 0.00 0.00 0.00 48.54 56.66 37.20 57.51 100.36 83.66 36 ER13b ExonRegion 0 2.51 4.78 2.18 4.42 2.85 6.34 3.25 2.87 11.83 3.58 0.15 0.59 0.70 0.75 1.14 0.27 0.19 4.29 3.32 10.48 8.17 8.30 12.31 37 E13_Db NovelBoundary 0 10.59 18.35 4.97 6.99 12.73 15.05 16.74 4.19 17.82 8.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.96 13.84 19.05 18.16 23.33 19.12 38 I13 Intron 0 1.72 6.12 2.52 8.45 4.24 11.41 3.21 3.67 16.69 4.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.56 2.81 11.40 5.03 13.19 9.23 39 I13_SR1 SilentIntronRegion 0 1.75 3.39 1.06 4.14 1.01 4.39 1.98 2.13 9.05 1.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.78 2.37 6.69 5.83 4.74 10.96 40 I13_AR1 ActiveIntronRegion 0 0.93 7.33 1.98 7.53 4.57 10.40 2.68 2.50 18.37 6.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 1.40 15.80 6.95 15.81 8.74 41 I13_SR2 SilentIntronRegion 0 2.80 6.90 4.84 16.59 4.22 18.55 6.66 6.17 34.52 7.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.05 3.48 22.39 11.82 24.46 20.35 42 I13_AR2 ActiveIntronRegion 0 1.83 6.82 4.34 12.38 7.81 16.42 4.17 5.32 22.73 7.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 5.00 13.96 3.36 17.69 8.35 43 I13_SR3 SilentIntronRegion 0 1.38 4.76 1.17 6.27 3.96 11.44 1.60 3.89 10.43 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.97 1.64 6.20 2.44 13.82 3.15 44 I13_AR3 ActiveIntronRegion 0 2.23 9.94 2.71 8.98 3.55 13.94 4.38 3.62 16.23 3.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.89 1.68 10.76 3.87 13.15 8.66 45 E14_Aa NovelBoundary 0 3.78 31.64 0.00 19.78 3.74 19.87 2.25 4.27 19.10 6.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.16 9.04 18.79 3.09 6.25 7.34 46 ER14a ExonRegion 0 25.43 52.29 27.36 32.57 21.86 72.26 22.37 32.21 52.02 46.19 0.00 0.00 0.00 0.34 0.00 0.00 0.00 20.18 25.44 31.89 91.30 85.05 62.17 47 E14_Da NovelBoundary 0 0.00 19.14 1.24 0.00 0.00 2.16 5.30 2.34 11.43 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 9.40 8.71 5.63 4.35 48 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E14a_E15b KnownJunction 0 27.04 29.47 5.91 5.26 25.30 0.00 4.06 16.02 10.42 9.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.38 12.85 75.74 67.42 42.77 50 I14_AR2 ActiveIntronRegion 0 0.41 5.71 0.16 1.27 0.00 3.19 0.09 1.73 4.66 0.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 1.72 0.00 10.42 0.00 51 I14_SR2 SilentIntronRegion 0 4.50 9.29 1.38 3.49 3.32 8.93 2.05 4.04 19.73 4.69 0.00 0.29 0.00 0.00 0.00 0.00 0.00 4.18 0.78 3.38 2.31 8.21 5.50 52 I14_AR3 ActiveIntronRegion 0 3.22 4.45 2.29 1.72 4.07 12.12 2.23 5.05 18.72 8.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.92 2.89 5.23 5.45 5.48 5.32 53 E15_Aa NovelBoundary 0 3.56 0.00 6.15 0.00 3.99 2.84 0.00 1.77 7.81 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 3.15 0.00 11.78 54 ER15a ExonRegion 0 6.35 5.08 2.76 3.41 5.35 11.00 0.99 3.89 7.41 4.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.62 1.59 2.66 17.63 13.54 12.48 55 ER15b ExonRegion 0 43.35 70.30 31.64 34.11 25.97 94.20 16.28 34.38 70.92 48.34 0.00 0.00 0.00 1.15 0.00 0.00 0.00 42.74 35.59 62.86 72.04 83.63 74.10 56 E15a_E16a KnownJunction 0 29.49 51.96 42.16 33.53 28.69 84.33 15.46 29.82 61.02 55.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.80 16.57 35.35 79.45 42.13 76.06 57 ER16a ExonRegion 0 17.68 40.96 24.88 40.05 22.67 72.68 14.64 22.47 59.07 41.05 0.00 0.17 0.00 0.20 0.00 0.00 0.00 35.89 15.13 36.97 51.30 43.30 40.76 58 IG30_AR3 ActiveIntergenicRegion 0 16.02 58.11 31.88 51.69 30.91 89.57 16.40 27.00 80.11 48.48 0.00 0.46 0.00 0.00 0.00 0.00 0.00 32.76 21.02 41.22 43.19 48.98 36.08 59 IG30_SR3 SilentIntergenicRegion 0 6.72 23.84 10.91 18.69 12.06 35.31 6.82 12.74 36.40 11.70 0.00 0.15 0.00 0.00 0.00 0.00 0.00 14.32 10.42 11.80 14.47 17.90 16.77 60 IG30_AR2 ActiveIntergenicRegion 0 7.30 13.85 11.86 20.17 12.94 15.84 3.99 17.01 32.78 10.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 3.52 11.51 1.52 13.75 4.82