Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KIAA0232 Gene 0 46.41 126.21 39.47 96.60 68.59 133.58 121.77 92.15 146.87 113.39 99.59 147.24 104.78 108.28 48.18 77.31 72.18 105.41 67.83 134.15 66.77 88.92 90.61 2 425103 Transcript 0 0.00 3.16 0.00 1.53 0.00 2.38 0.00 2.34 6.92 3.01 5.21 0.00 6.82 13.71 0.00 7.69 7.39 7.38 3.76 10.99 5.19 8.08 0.00 3 307659 Transcript 0 3.50 2.39 0.37 2.06 1.61 1.11 4.55 0.52 0.74 1.07 0.00 2.08 3.95 0.33 0.83 2.38 3.87 0.00 0.00 9.42 3.35 1.01 0.59 4 ER1a ExonRegion 0 1.96 7.19 0.00 0.00 0.00 12.54 8.87 0.00 6.87 3.13 9.75 0.20 4.05 14.60 0.95 13.59 19.57 5.21 8.60 8.99 5.45 10.40 4.08 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 E1a_E3a KnownJunction 0 0.00 3.16 0.00 1.53 0.00 2.38 0.00 2.34 6.92 3.01 5.21 0.00 6.82 13.71 0.00 7.69 7.39 7.38 3.76 10.99 5.19 8.08 0.00 7 I1_SR1 SilentIntronRegion 0 9.57 10.47 15.24 15.61 7.00 4.64 15.87 16.04 13.83 10.53 1.60 7.75 6.82 1.06 5.13 6.11 2.70 7.85 9.28 20.64 1.70 1.21 9.42 8 I1_AR1 ActiveIntronRegion 0 9.30 14.13 24.64 32.15 16.45 3.32 32.12 28.50 24.22 25.01 2.20 8.38 19.10 0.89 9.64 7.22 3.03 7.02 4.62 26.88 2.37 1.87 8.38 9 I1_AR2 ActiveIntronRegion 0 12.24 8.64 11.64 13.67 12.32 4.55 19.85 11.25 10.00 7.67 2.28 8.21 5.02 1.14 4.43 7.02 5.85 4.88 7.90 21.35 1.30 1.23 4.51 10 I1_SR4 SilentIntronRegion 0 4.31 11.64 16.69 16.09 6.56 4.40 17.14 6.86 12.95 8.75 1.78 12.01 8.05 0.43 5.60 10.70 2.13 10.03 6.00 19.48 3.24 1.70 4.61 11 E2_Aa NovelBoundary 0 10.45 19.80 13.01 9.59 12.65 7.33 6.54 5.67 9.95 9.78 4.16 0.00 0.00 0.00 0.00 7.09 0.00 6.43 0.00 23.71 5.25 0.00 7.85 12 ER2a ExonRegion 0 4.13 7.17 1.11 6.17 4.84 3.34 13.65 1.56 2.22 1.72 0.00 6.24 11.84 0.99 2.49 7.15 8.06 0.00 0.00 18.74 3.94 0.32 1.78 13 E2a_E3a KnownJunction 0 6.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 3.55 0.00 0.00 9.52 6.12 2.69 0.00 14 I2_AR2 ActiveIntronRegion 0 4.54 4.36 19.08 19.66 8.03 8.91 16.64 14.32 12.35 13.93 0.00 6.18 10.72 1.39 2.90 0.00 3.30 1.58 3.19 11.85 0.00 0.00 0.84 15 I2_AR3 ActiveIntronRegion 0 6.35 5.42 20.01 19.08 8.03 7.34 15.89 17.28 11.73 13.00 0.00 4.33 9.38 1.62 2.90 0.00 6.60 1.85 1.06 8.51 0.00 0.00 0.00 16 I2_AR4 ActiveIntronRegion 0 4.01 9.62 16.16 18.80 7.25 6.04 20.44 11.81 12.09 20.21 0.00 28.14 12.12 1.62 7.62 0.00 5.91 1.85 2.85 9.88 0.00 0.00 2.69 17 I2_AR5 ActiveIntronRegion 0 4.23 16.17 19.12 15.40 5.89 5.50 12.38 11.23 8.83 20.13 0.00 23.81 0.47 2.92 2.03 2.38 2.81 1.20 1.11 11.70 0.00 0.00 0.88 18 I2_AR6 ActiveIntronRegion 0 5.88 17.62 20.42 19.84 7.73 5.50 12.50 8.64 10.70 21.54 0.00 10.58 1.04 1.99 2.90 5.94 0.00 0.00 0.00 11.82 0.00 0.00 0.00 19 I2_AR7 ActiveIntronRegion 0 9.62 13.36 18.73 15.56 11.39 2.04 12.33 9.06 11.56 22.00 0.00 21.89 7.71 1.48 3.90 4.88 2.40 1.16 2.18 15.93 0.00 0.00 3.06 20 I2_AR8 ActiveIntronRegion 0 7.28 17.86 14.02 14.00 8.36 1.16 14.98 14.30 11.81 19.26 0.00 11.03 3.15 1.16 7.19 0.00 4.34 0.94 0.09 9.09 0.00 1.26 1.13 21 I2_AR9 ActiveIntronRegion 0 6.77 25.56 10.49 11.58 4.91 3.10 17.87 12.58 11.81 17.38 0.00 13.26 12.51 1.08 2.92 0.00 1.47 3.24 1.29 7.31 0.00 0.94 1.19 22 I2_AR12 ActiveIntronRegion 0 13.23 27.83 3.19 4.66 8.16 3.24 15.58 2.59 6.48 4.26 0.52 6.21 15.24 2.27 0.00 2.48 1.43 1.20 1.49 6.88 1.07 3.40 0.00 23 I2_AR13 ActiveIntronRegion 0 20.32 43.38 5.72 6.91 12.67 2.93 20.57 7.72 12.43 11.93 3.87 11.83 4.69 2.17 5.42 0.00 6.38 5.30 3.19 9.65 2.20 0.28 3.13 24 I2_AR14 ActiveIntronRegion 0 20.44 44.97 16.95 6.58 14.53 1.05 19.82 12.44 11.96 16.84 3.26 21.77 9.92 0.19 7.29 0.00 3.96 5.07 2.09 14.53 0.25 0.00 5.87 25 I2_AR15 ActiveIntronRegion 0 23.91 45.78 26.42 14.12 12.10 1.00 20.93 15.77 14.75 18.22 1.76 9.40 9.11 1.42 3.66 2.53 0.00 3.32 4.85 18.91 0.00 3.41 3.24 26 I2_AR16 ActiveIntronRegion 0 10.42 36.35 5.97 8.55 9.16 1.83 10.66 8.12 8.28 9.49 0.53 3.14 7.39 1.38 6.82 1.93 0.00 6.65 2.31 9.63 0.00 0.42 7.12 27 ER3a ExonRegion 1 6.07 22.41 13.84 34.56 10.04 39.04 40.28 36.47 91.41 72.31 92.09 111.86 58.67 90.30 15.60 65.73 71.34 103.26 49.27 133.46 78.74 57.09 71.11 28 E3a_E4a KnownJunction 1 15.04 40.19 11.62 31.10 11.04 42.65 53.30 39.88 141.90 79.27 95.13 106.38 112.17 144.74 13.35 75.45 116.22 144.71 47.06 113.64 115.59 47.46 98.59 29 ER4a ExonRegion 1 10.43 60.83 11.80 47.14 26.02 95.34 88.20 56.94 138.09 90.59 132.07 154.04 121.06 149.16 18.77 75.01 106.42 135.72 59.76 139.45 89.09 83.60 115.85 30 E4a_E5a KnownJunction 1 3.48 32.17 16.32 45.05 20.71 88.19 82.36 51.67 131.16 72.02 82.55 131.74 87.66 145.39 22.25 84.25 106.50 169.54 41.51 172.90 53.93 70.60 94.33 31 ER5a ExonRegion 1 7.52 44.25 21.87 39.79 15.06 61.53 66.10 50.02 147.59 75.88 117.10 169.17 140.56 129.35 11.17 120.53 81.34 209.54 73.55 139.41 79.63 97.58 135.44 32 E5a_E6a KnownJunction 1 7.04 49.73 33.38 47.65 15.87 61.67 89.47 47.81 196.09 95.28 165.15 200.62 189.27 137.44 10.75 168.67 75.55 224.22 97.51 140.75 87.60 172.07 228.86 33 ER6a ExonRegion 1 7.79 55.85 26.75 62.29 29.69 68.12 67.46 69.77 180.01 105.81 179.64 247.57 155.17 147.34 22.86 158.07 112.27 207.58 75.67 177.48 98.39 130.07 169.47 34 E6a_E7a KnownJunction 1 13.41 68.67 15.20 66.33 51.61 100.79 78.57 73.52 166.66 108.58 110.82 174.36 190.25 184.24 27.81 155.86 80.97 220.82 79.91 261.87 74.69 119.53 216.91 35 E7_Aa NovelBoundary 0 2.82 12.30 6.30 14.82 0.00 13.57 10.55 11.30 20.28 15.15 6.95 19.51 19.48 0.00 4.45 4.36 13.56 2.53 26.45 6.07 0.00 0.00 7.51 36 ER7a ExonRegion 0 26.29 126.81 24.65 84.20 59.67 120.39 126.24 84.90 159.02 120.33 124.39 219.12 162.42 137.02 33.30 94.29 96.90 126.06 69.78 171.91 81.76 105.69 108.14 37 E7_Da NovelBoundary 0 34.23 21.44 31.34 39.79 23.51 25.72 34.18 19.76 31.71 26.97 23.74 26.56 39.28 10.30 14.59 4.36 16.18 7.25 0.00 46.92 16.99 21.37 11.35 38 E7a_E8a KnownJunction 0 28.08 105.84 25.84 122.83 58.15 85.18 111.47 70.93 130.24 144.44 68.12 130.24 59.25 67.87 79.61 59.81 35.62 39.88 18.73 108.28 18.16 64.36 60.18 39 I7 Intron 0 11.40 15.08 8.90 16.23 9.14 11.50 20.36 15.18 22.31 15.39 14.00 29.20 21.90 15.39 8.87 12.92 11.10 15.77 18.39 23.60 8.19 11.15 16.83 40 I7_SR1 SilentIntronRegion 0 22.97 15.14 16.69 31.96 17.28 11.99 26.45 24.53 29.92 14.04 14.49 43.38 34.79 15.64 17.00 15.55 10.77 11.99 21.04 18.64 5.57 17.45 13.56 41 I7_AR1 ActiveIntronRegion 0 26.38 25.94 17.14 20.48 10.33 15.05 23.94 27.60 34.91 21.44 16.97 20.13 33.84 18.76 14.10 19.37 18.53 29.65 31.78 27.34 11.58 10.46 25.64 42 I7_SR2 SilentIntronRegion 0 20.16 22.05 13.80 24.25 0.00 7.91 19.30 15.47 35.17 25.84 13.53 19.82 26.66 10.69 15.12 9.70 9.03 20.81 40.07 25.87 6.03 8.44 19.01 43 I7_AR2 ActiveIntronRegion 0 49.87 28.71 14.80 29.71 6.85 18.19 25.68 28.28 41.65 29.13 26.21 28.57 26.64 15.07 18.34 14.86 13.60 25.87 50.58 39.40 10.23 16.33 13.86 44 I7_AR3 ActiveIntronRegion 0 14.06 26.62 8.97 16.24 10.64 8.81 24.42 15.86 24.75 18.71 14.11 39.67 29.46 15.14 6.59 8.48 9.20 16.78 21.95 28.39 9.27 13.44 15.90 45 I7_SR3 SilentIntronRegion 0 5.24 11.60 6.98 13.53 5.55 8.34 17.78 11.84 16.73 16.39 12.31 35.57 20.39 14.81 4.37 13.33 12.12 11.25 15.42 22.80 6.25 9.32 12.41 46 I7_AR4 ActiveIntronRegion 0 3.02 15.86 7.00 12.83 9.60 9.29 23.32 14.50 18.83 13.10 15.54 14.59 11.59 16.38 5.53 16.08 13.18 18.20 14.12 26.59 10.13 10.47 23.49 47 I7_AR5 ActiveIntronRegion 0 5.38 10.16 4.34 9.92 5.70 13.03 15.42 9.28 17.47 13.66 13.13 22.47 13.19 14.89 7.01 10.86 9.71 15.85 14.84 23.32 8.66 8.49 17.01 48 E8_Aa NovelBoundary 0 29.93 32.36 5.26 13.68 10.70 24.64 23.27 10.35 20.37 18.40 9.32 24.61 6.82 30.26 4.45 18.63 17.11 8.12 0.00 37.26 2.72 20.45 12.63 49 ER8a ExonRegion 0 29.09 105.09 35.61 92.98 69.13 120.27 106.97 85.68 149.36 130.84 120.16 154.79 148.10 108.83 51.37 69.23 93.27 61.33 46.11 132.27 30.14 97.81 80.53 50 E8a_E9a KnownJunction 1 40.01 111.56 33.50 127.92 34.80 136.06 110.80 68.27 125.49 100.44 92.02 247.88 228.39 82.70 31.03 60.58 62.83 83.74 42.54 102.65 39.41 66.87 51.47 51 E8a_E10a NovelJunction 0 3.33 11.05 4.35 3.63 15.20 17.77 32.42 4.19 34.69 20.66 4.63 12.90 13.31 2.47 4.45 19.82 8.88 16.50 4.80 20.71 0.00 0.00 8.11 52 ER9a ExonRegion 1 31.47 151.05 26.17 104.29 87.40 161.73 135.08 105.88 148.97 115.04 100.96 226.15 208.51 114.33 65.13 110.45 80.97 86.32 66.37 121.58 46.41 88.15 112.97 53 E9_Da NovelBoundary 0 0.00 11.77 4.52 17.85 7.89 24.13 16.21 25.18 20.78 13.35 2.68 6.30 6.17 10.24 0.00 0.00 4.77 14.63 26.07 34.58 4.88 12.25 16.48 54 E9a_E10a KnownJunction 0 24.15 127.08 12.57 44.28 93.46 130.72 97.78 47.40 71.90 80.29 80.28 142.55 107.79 90.53 54.14 111.34 59.47 60.23 60.05 68.01 33.92 60.31 60.27 55 I9_SR1 SilentIntronRegion 0 4.92 9.34 7.56 8.72 5.00 15.19 12.90 13.27 17.47 14.07 7.42 7.06 12.75 9.67 5.94 7.65 9.17 24.53 11.42 22.35 9.24 5.89 11.57 56 E10_Aa NovelBoundary 0 16.97 29.99 15.55 8.09 14.77 20.84 15.90 21.73 9.90 8.86 7.11 6.60 0.00 16.89 18.05 4.36 4.77 14.72 4.52 13.74 12.05 2.51 8.54 57 ER10a ExonRegion 0 78.54 153.75 62.15 127.05 92.88 171.69 139.71 115.28 150.81 120.33 77.72 85.34 54.27 85.54 72.06 62.94 48.15 87.77 73.07 103.60 53.84 80.88 77.34