Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM129 Gene 0 35.12 31.28 102.08 84.71 29.77 56.63 29.60 47.89 54.49 87.67 64.70 23.62 21.37 100.82 126.25 76.50 61.09 119.66 82.93 68.91 123.36 50.01 62.40 2 303277 Transcript 0 0.71 2.18 3.92 4.62 0.96 1.24 2.35 4.60 4.96 9.61 6.18 0.00 0.00 7.12 13.93 9.63 1.37 6.92 5.87 3.19 9.44 1.21 7.63 3 382936 Transcript 1 35.19 14.87 53.07 55.70 14.09 25.78 10.20 46.54 53.41 78.87 98.76 0.00 6.82 145.98 127.57 114.67 73.12 80.34 69.18 55.80 173.29 46.78 92.88 4 480360 Transcript 0 7.37 9.75 13.43 9.91 10.85 13.11 6.36 6.65 6.01 8.21 4.65 5.92 4.50 12.11 10.94 11.74 8.67 12.67 14.67 7.90 6.59 3.17 7.22 5 460722 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 3.50 0.00 2.28 4.80 0.00 0.00 0.00 0.00 6 476253 Transcript 0 10.38 15.23 82.32 56.47 7.04 34.35 15.90 20.06 27.20 52.62 13.60 7.45 5.17 43.50 38.53 19.70 21.66 71.06 49.21 52.83 16.14 13.62 13.83 7 ER1a ExonRegion 0 0.00 0.44 0.74 0.05 0.19 1.18 1.18 0.00 0.49 1.93 3.38 0.00 0.00 4.35 0.00 0.53 0.00 7.98 5.01 2.51 5.82 0.52 7.87 8 ER1b ExonRegion 0 1.94 4.40 10.93 7.99 3.05 13.76 6.91 10.27 9.57 22.88 21.23 2.72 3.46 30.92 24.97 19.96 22.14 35.62 22.98 16.84 37.66 11.49 25.30 9 E1_Ac KnownBoundary 0 2.82 17.83 71.91 44.58 24.96 41.85 15.59 55.53 49.85 90.85 57.17 23.86 27.76 113.54 70.71 69.81 107.25 187.29 74.64 67.88 140.48 21.55 74.69 10 ER1c ExonRegion 0 5.26 12.04 76.51 44.69 13.58 27.11 13.39 36.23 49.23 93.02 78.84 22.03 40.34 85.78 91.51 72.32 60.46 122.36 61.51 56.33 119.94 48.95 56.57 11 E1_Da NovelBoundary 0 0.00 0.00 24.10 10.02 0.00 8.29 0.00 7.11 2.49 15.50 4.69 0.00 0.00 15.60 33.62 19.82 30.76 32.21 15.53 23.33 19.46 3.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E4a KnownJunction 0 3.19 11.77 90.18 64.36 0.00 36.40 12.45 46.54 49.68 107.23 76.81 19.66 27.60 65.34 60.70 66.82 43.01 135.97 87.81 44.29 125.47 48.56 43.19 14 I1 Intron 0 5.04 6.40 16.42 12.61 5.42 8.66 5.12 10.19 10.43 14.76 5.13 1.39 1.19 20.50 18.01 16.84 15.59 27.80 12.89 18.18 8.52 4.40 8.72 15 I1_AR1 ActiveIntronRegion 0 1.92 3.24 18.50 16.00 4.52 10.45 6.53 9.51 7.34 13.80 3.00 1.70 1.63 21.10 16.49 13.52 10.79 28.39 8.55 16.60 15.44 2.85 6.94 16 I1_SR1 SilentIntronRegion 0 3.53 6.06 14.99 14.27 5.22 6.28 3.39 13.98 13.05 18.33 3.55 0.73 0.00 24.92 17.48 17.94 16.99 32.54 19.63 23.69 6.85 5.03 8.91 17 I1_AR2 ActiveIntronRegion 0 6.64 7.79 19.35 11.33 6.10 9.63 5.92 9.29 10.91 14.99 7.40 1.97 2.05 19.11 20.65 18.83 18.38 28.04 12.36 17.30 7.57 5.30 10.15 18 E2_Aa NovelBoundary 0 80.09 57.88 58.54 40.79 37.95 37.14 31.44 27.97 20.37 36.72 12.74 0.00 6.01 71.16 63.17 35.72 45.16 68.03 50.45 26.85 10.75 10.72 19.29 19 ER2a ExonRegion 0 10.80 23.52 37.04 34.95 25.31 27.45 16.96 16.74 12.36 21.16 9.39 13.67 13.11 30.47 29.01 37.39 18.16 46.80 37.49 22.27 20.34 8.28 17.89 20 E2_Da NovelBoundary 0 34.38 18.15 80.54 37.49 43.04 40.09 6.23 30.85 26.91 46.07 22.27 0.00 13.64 24.31 40.42 23.67 26.18 69.39 36.05 36.82 20.32 5.57 8.37 21 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 0.00 0.00 0.00 0.00 0.00 22 I2 Intron 0 11.42 6.98 13.43 11.95 11.81 17.99 9.09 5.05 3.61 5.03 8.53 6.99 11.36 16.77 13.06 21.86 11.33 12.15 12.50 8.35 14.01 4.09 4.32 23 I2_AR1 ActiveIntronRegion 0 11.64 7.12 13.70 12.19 12.04 18.34 9.27 5.15 3.68 5.13 8.70 7.13 11.54 17.10 13.31 22.29 11.55 12.39 12.74 8.51 14.28 4.17 4.40 24 E3_Aa NovelBoundary 0 39.93 32.49 86.40 46.45 57.05 39.86 32.11 48.18 19.65 53.54 2.68 0.00 12.99 26.90 19.66 20.25 17.77 61.52 42.73 38.93 11.12 7.84 3.93 25 ER3a ExonRegion 0 26.03 25.22 30.08 14.63 28.93 38.11 14.82 16.50 17.71 19.89 11.16 15.95 9.38 30.07 25.68 17.46 18.06 16.54 35.84 17.24 10.01 7.58 14.11 26 E3_Da NovelBoundary 0 17.48 17.30 82.23 33.13 16.89 18.28 14.00 21.07 23.55 39.73 4.84 5.85 0.00 28.78 8.90 39.82 48.62 56.87 9.41 38.22 5.31 8.57 7.68 27 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 3.85 3.46 0.00 0.00 0.00 2.59 0.00 4.10 28 I3 Intron 0 8.43 6.48 21.83 9.71 7.46 9.50 3.17 7.18 4.40 10.21 3.85 5.99 2.86 19.07 23.19 18.95 6.58 14.64 16.50 12.72 5.27 2.49 7.02 29 I3_AR1 ActiveIntronRegion 0 8.57 6.58 22.17 9.86 7.58 9.63 3.22 7.30 4.47 10.38 3.91 6.08 2.87 19.36 23.56 19.25 6.65 14.87 16.76 12.92 5.35 2.53 7.13 30 E4_Aa NovelBoundary 0 7.56 8.81 72.32 49.74 34.21 28.96 12.23 26.04 48.58 57.11 12.32 6.30 6.82 21.72 23.49 17.94 7.20 77.85 41.51 32.53 22.12 19.72 28.26 31 ER4a ExonRegion 0 26.89 33.82 133.44 93.46 27.47 71.27 30.11 57.36 79.55 134.51 99.30 34.85 54.71 140.23 153.08 116.28 89.78 171.14 112.33 94.45 195.96 70.35 91.16 32 E4_Da KnownBoundary 0 37.34 37.95 210.28 154.09 29.88 62.86 31.18 99.93 110.04 169.53 108.19 36.01 19.80 160.69 180.48 97.32 115.94 199.27 153.23 139.66 222.52 96.20 101.84 33 ER4b ExonRegion 0 22.69 36.79 184.38 139.70 33.70 74.81 40.19 81.88 100.41 171.80 120.12 47.54 46.99 175.24 185.76 128.40 109.00 222.79 121.91 122.41 228.16 69.46 105.01 34 E4_Ab KnownBoundary 0 36.23 44.86 302.33 192.95 32.77 85.06 54.36 115.79 100.69 206.70 118.24 37.96 47.56 169.40 162.43 118.94 121.36 322.63 154.64 162.92 227.96 94.30 87.41 35 ER4c ExonRegion 0 26.80 24.62 177.29 135.78 38.94 64.69 36.51 70.20 101.62 158.29 127.06 40.58 41.76 183.31 194.21 121.61 134.42 225.27 145.80 121.76 234.15 75.71 104.30 36 E4_Db NovelBoundary 0 14.08 18.09 169.36 98.86 12.56 55.65 36.43 42.72 51.24 85.61 25.85 18.91 6.82 73.17 91.85 56.05 55.63 88.67 101.56 62.38 46.09 21.74 22.37 37 E4b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 3.50 0.00 2.28 4.80 0.00 0.00 0.00 0.00 38 E4b_E5c KnownJunction 1 35.19 14.87 53.07 55.70 14.09 25.78 10.20 46.54 53.41 78.87 98.76 0.00 6.82 145.98 127.57 114.67 73.12 80.34 69.18 55.80 173.29 46.78 92.88 39 E4b_E6a KnownJunction 0 0.00 0.00 11.03 13.82 0.00 2.56 5.87 13.80 14.38 24.61 15.16 0.00 0.00 17.01 35.97 25.38 4.11 12.77 12.61 2.81 22.49 3.12 15.02 40 I4 Intron 0 16.95 19.71 85.05 56.50 12.41 37.10 16.18 21.71 22.50 46.46 22.40 6.92 8.14 44.76 40.10 35.70 29.91 86.74 49.68 52.91 19.50 15.81 14.23 41 I4_AR1 ActiveIntronRegion 0 17.08 19.86 85.75 56.96 12.51 37.39 16.32 21.89 22.68 46.84 22.58 6.98 8.21 45.10 40.42 35.99 30.13 87.46 50.09 53.33 19.66 15.94 14.35 42 E5_Aa NovelBoundary 0 28.52 14.80 143.93 100.62 27.50 68.54 48.53 42.80 29.75 56.28 11.53 19.96 0.00 55.98 39.56 31.02 21.60 89.71 38.21 51.65 25.51 16.35 19.63 43 ER5a ExonRegion 0 10.38 15.23 82.32 56.47 7.04 34.35 15.90 20.06 27.20 52.62 13.60 7.45 5.17 43.50 38.53 19.70 21.66 71.06 49.21 52.83 16.14 13.62 13.83 44 E5_Ab KnownBoundary 0 17.34 15.79 98.93 72.22 32.34 49.40 23.54 27.48 19.47 50.61 7.26 20.26 6.82 46.97 35.60 15.30 23.19 73.46 33.98 44.93 18.16 2.63 0.00 45 E5_Ac KnownBoundary 0 6.08 17.89 94.35 63.93 26.99 92.33 13.47 25.55 36.81 52.89 30.90 6.30 0.00 47.27 54.52 27.17 47.03 76.73 57.04 65.20 26.75 25.11 11.95 46 ER5b ExonRegion 0 12.25 10.60 110.85 75.35 29.82 69.09 16.74 34.94 34.67 70.08 21.47 17.63 4.36 58.87 46.01 26.01 35.60 98.92 53.92 49.85 31.72 18.45 11.12 47 ER5c ExonRegion 0 53.58 30.98 139.47 126.83 38.87 68.21 31.42 71.28 78.09 117.36 95.40 27.80 30.18 156.52 162.91 124.57 97.24 222.53 111.25 82.34 182.56 74.56 95.17 48 E5_Da NovelBoundary 0 13.26 6.05 77.17 36.43 8.66 27.03 8.08 11.99 18.61 32.42 14.21 6.60 0.00 27.14 9.15 8.20 3.74 47.13 8.28 32.34 16.80 2.88 3.50 49 E5a_E6a KnownJunction 0 83.20 28.61 75.84 69.55 24.96 44.69 32.99 62.23 63.57 84.08 52.22 25.06 32.30 117.02 122.38 77.16 82.84 143.06 69.55 40.97 187.25 70.60 65.39 50 E6_Aa NovelBoundary 0 3.56 21.18 71.64 65.96 15.87 27.60 17.31 27.03 18.98 55.42 20.37 0.00 0.00 21.48 19.28 12.90 17.67 94.47 27.58 33.05 20.02 5.94 4.27 51 ER6a ExonRegion 0 57.70 44.66 171.08 129.28 43.48 90.17 46.52 75.41 80.26 130.22 94.98 35.67 26.17 145.90 194.28 119.62 87.03 193.83 146.84 98.32 201.82 82.49 98.12 52 E6_Da KnownBoundary 0 99.35 59.00 207.77 179.53 67.83 75.41 48.93 110.12 90.68 133.05 77.49 36.61 13.80 112.78 202.24 83.57 69.10 164.28 107.01 84.37 170.07 124.98 82.97 53 ER6b ExonRegion 0 71.31 55.05 168.47 161.36 58.12 96.46 54.32 74.13 81.78 121.50 94.93 28.29 23.63 143.64 205.41 109.92 74.52 161.38 111.84 108.78 171.51 71.72 97.29 54 E6_Db KnownBoundary 0 91.42 50.39 162.18 143.87 42.87 53.66 49.42 115.09 90.88 133.26 81.23 30.76 52.11 124.20 242.17 108.18 113.70 144.05 71.06 121.70 165.93 59.21 70.68 55 ER6c ExonRegion 0 59.57 47.33 97.57 101.69 39.65 64.42 37.65 57.29 63.45 91.37 70.58 28.11 16.31 115.44 180.51 79.79 67.14 95.91 78.09 78.71 133.21 63.61 62.25 56 ER6d ExonRegion 0 2.12 6.10 0.00 0.00 2.68 0.00 0.00 0.00 0.00 2.29 0.00 0.00 0.00 0.00 5.80 2.97 0.00 0.00 0.00 4.26 0.00 0.00 0.00 57 IG31 Intergenic 0 8.02 4.85 8.45 7.24 7.36 4.43 5.46 6.58 4.65 8.10 10.84 7.30 3.51 15.81 19.52 12.17 10.65 11.77 4.83 7.82 3.96 2.22 2.72 58 IG31_AR3 ActiveIntergenicRegion 0 10.54 4.02 2.13 0.00 11.28 2.87 0.81 1.28 5.50 2.02 7.40 0.00 5.61 6.96 3.22 0.00 9.90 0.04 1.94 3.42 0.00 1.27 2.11 59 IG31_SR2 SilentIntergenicRegion 0 8.61 5.91 6.27 5.02 8.42 3.27 5.46 7.07 4.03 7.62 8.45 9.61 3.94 11.34 13.70 7.70 10.21 8.30 2.39 6.10 3.45 1.44 2.89 60 IG31_AR2 ActiveIntergenicRegion 0 9.30 4.56 13.54 12.24 7.91 6.21 7.19 8.16 6.54 11.75 18.22 7.62 4.22 27.76 34.58 22.84 15.28 19.16 7.80 12.61 5.45 3.54 2.27