Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 APBB2 Gene 0 47.52 44.97 43.84 63.33 62.96 62.40 38.03 38.84 55.09 55.48 40.43 23.53 41.65 27.13 5.25 18.64 47.52 34.70 20.68 58.79 71.13 44.87 35.66 2 295974 Transcript 0 14.68 10.51 15.18 22.92 19.16 27.82 12.39 19.43 34.87 25.98 35.66 21.82 49.98 30.53 2.35 20.06 51.65 38.28 16.75 49.34 83.74 25.59 38.10 3 316212 Transcript 0 16.69 9.63 22.89 29.78 20.99 42.59 21.18 24.81 46.38 42.93 41.37 12.34 26.05 15.20 0.41 9.40 26.75 43.05 17.19 61.76 110.60 42.64 43.50 4 IG49_AR6 ActiveIntergenicRegion 0 0.53 1.53 2.07 5.65 4.03 11.11 5.18 5.18 16.90 2.24 0.97 0.00 0.00 0.38 0.00 0.00 0.94 0.00 3.36 2.30 0.55 1.05 0.74 5 ER1a ExonRegion 0 13.07 2.94 2.66 5.13 8.69 14.86 8.83 2.73 5.85 4.28 16.69 2.47 3.73 10.05 0.98 8.87 17.82 18.44 13.65 16.26 47.16 12.75 22.26 6 E1a_E2a KnownJunction 0 14.15 0.00 4.41 7.76 7.98 0.00 0.00 6.37 9.66 7.28 2.47 0.00 13.64 26.31 0.00 24.69 24.96 5.60 0.00 8.95 24.83 12.19 8.62 7 I1_AR3 ActiveIntronRegion 0 19.00 8.46 15.68 9.66 12.38 2.42 4.37 3.40 3.28 1.80 0.51 1.88 2.88 0.27 0.89 1.57 1.96 0.79 1.26 1.55 0.73 0.55 1.16 8 I1_AR4 ActiveIntronRegion 0 7.32 3.64 15.36 7.93 12.31 1.28 3.99 2.98 2.56 1.98 0.83 1.65 3.37 0.00 0.00 2.76 1.53 0.64 3.40 0.99 1.02 0.00 1.36 9 ER2a ExonRegion 0 4.21 5.84 12.62 16.27 8.32 9.74 9.89 12.34 21.49 16.35 30.48 19.37 28.38 23.12 1.73 19.20 44.92 32.76 24.03 52.70 92.08 34.12 29.35 10 E2a_E3a KnownJunction 0 0.00 12.76 10.35 34.99 17.06 28.51 7.99 17.46 42.13 23.48 26.11 25.06 33.44 27.43 6.30 36.40 72.28 72.00 31.34 89.87 79.69 40.48 59.24 11 ER3a ExonRegion 0 11.36 14.80 14.69 25.54 46.90 55.52 21.72 19.17 42.41 25.99 47.67 34.71 75.63 39.98 3.47 31.47 56.68 50.86 25.11 78.70 99.66 32.98 48.04 12 E3a_E4a KnownJunction 1 7.26 11.84 23.21 22.47 31.58 56.67 27.73 31.38 51.50 35.43 21.58 24.91 66.72 28.19 5.07 18.54 49.37 47.75 27.11 65.71 85.62 33.31 54.46 13 E3a_E5a NovelJunction 0 3.63 3.16 17.15 6.89 15.20 2.67 6.54 4.48 16.72 15.66 34.59 12.90 13.64 21.66 0.00 11.79 16.46 16.25 11.48 46.15 42.01 23.39 31.67 14 ER4a ExonRegion 0 12.96 6.14 18.23 31.57 22.28 28.27 9.36 23.78 46.46 32.82 35.90 34.64 61.69 32.61 2.25 26.29 47.53 57.70 17.00 66.61 96.56 38.48 71.50 15 E4a_E5a KnownJunction 0 20.45 3.35 13.84 24.54 12.99 47.93 9.14 32.20 61.52 31.32 71.54 20.71 53.89 36.26 0.00 15.72 47.87 74.16 4.80 81.43 127.20 38.33 82.89 16 ER5a ExonRegion 0 18.37 5.39 16.68 28.38 12.60 20.76 8.88 32.24 59.20 44.45 84.91 36.83 97.27 50.28 6.05 25.41 96.44 54.95 19.30 69.97 207.63 22.59 49.63 17 E5a_E7b KnownJunction 1 29.19 0.00 30.01 21.58 0.00 30.38 10.20 28.75 57.09 51.84 69.54 36.91 54.05 31.37 0.00 7.18 86.96 46.88 29.37 48.26 188.24 24.86 41.83 18 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER7a ExonRegion 0 5.08 1.22 4.66 7.09 0.00 9.17 2.91 5.88 14.33 9.63 15.08 6.06 16.88 7.47 0.00 2.97 17.82 7.76 7.01 11.49 37.90 6.25 9.40 20 ER7b ExonRegion 0 18.03 13.11 29.51 26.51 20.48 39.42 21.28 30.66 54.55 43.07 63.84 38.64 86.01 41.10 4.36 35.43 67.11 64.11 18.44 75.93 140.80 45.87 55.76 21 E7a_E8a KnownJunction 1 10.59 3.22 17.03 27.20 7.72 47.53 18.99 14.09 36.75 43.65 41.38 31.21 15.10 12.66 0.00 8.29 62.65 44.19 12.71 24.42 84.26 22.60 36.36 22 I7_AR2 ActiveIntronRegion 0 0.21 0.27 3.86 17.31 1.25 3.30 3.35 3.49 1.24 2.62 2.42 0.00 9.15 0.00 3.05 2.03 6.44 1.85 2.18 3.19 1.47 0.00 1.71 23 I7_AR3 ActiveIntronRegion 0 2.12 0.00 4.18 20.32 5.59 0.00 7.04 10.84 0.00 2.92 1.85 0.00 2.35 0.00 0.79 1.35 12.15 0.50 1.59 2.13 8.01 0.00 1.74 24 I7_AR5 ActiveIntronRegion 0 11.17 2.47 6.13 14.39 6.76 3.03 9.91 8.62 6.86 2.08 0.72 6.10 11.96 0.13 1.60 4.73 6.70 3.70 3.58 4.72 3.51 0.78 4.12 25 I7_AR6 ActiveIntronRegion 0 10.58 5.76 15.11 27.26 5.35 3.67 5.30 5.19 6.79 2.29 0.00 8.66 0.00 0.00 0.00 8.92 3.85 0.00 15.93 12.77 0.00 0.00 8.81 26 I7_AR7 ActiveIntronRegion 0 10.58 6.10 12.13 25.49 5.35 3.67 3.18 5.19 4.82 2.29 0.00 8.66 0.47 0.00 0.00 8.92 6.60 0.00 15.61 11.28 0.00 0.00 5.87 27 I7_AR8 ActiveIntronRegion 0 13.44 4.27 11.05 13.08 11.24 3.64 7.26 2.38 2.99 0.95 0.00 3.05 6.52 0.00 0.71 2.55 1.67 0.45 0.41 3.85 0.54 0.51 1.51 28 I7_SR4 SilentIntronRegion 0 12.59 7.29 22.00 16.88 9.59 4.75 5.65 8.64 5.75 4.43 0.15 6.81 7.49 1.01 0.47 6.34 3.52 4.69 4.13 6.49 5.04 2.06 4.93 29 I7_AR1 ActiveIntronRegion 1 3.67 2.82 8.21 9.82 4.64 1.27 5.97 3.55 4.47 0.89 0.67 1.24 17.50 0.00 0.00 1.55 5.15 0.48 1.11 4.80 3.06 0.00 5.60 30 I7_AR2 ActiveIntronRegion 1 12.57 0.00 5.48 12.99 17.31 1.40 2.96 0.00 4.94 0.00 0.00 0.00 22.35 0.00 0.00 5.94 3.69 3.15 0.00 5.26 4.41 0.00 1.38 31 I7_AR12 ActiveIntronRegion 0 15.40 4.34 9.04 13.60 10.51 3.61 6.75 8.75 9.96 7.26 0.63 4.93 8.87 0.38 0.00 2.92 3.25 1.63 2.09 3.84 4.27 1.37 5.19 32 E8_Aa NovelBoundary 0 2.89 2.70 4.97 0.00 0.00 0.00 0.00 2.01 6.11 0.00 0.00 0.00 19.48 0.00 0.00 3.59 0.00 0.00 0.00 0.00 5.93 0.00 0.00 33 ER8a ExonRegion 0 16.60 13.36 21.08 26.07 27.60 53.30 25.44 29.18 57.43 44.81 68.12 43.46 85.92 47.75 2.92 39.81 85.09 61.71 18.49 71.93 156.48 49.13 71.26 34 E8a_E9a KnownJunction 0 0.00 6.38 15.67 15.48 4.33 32.31 8.35 39.31 43.29 41.50 31.59 0.00 8.28 2.94 0.00 0.00 0.00 25.54 21.74 55.03 171.56 35.70 39.44 35 E8a_E10a KnownJunction 1 0.00 11.31 0.00 2.03 3.57 2.90 4.37 4.07 4.83 2.90 32.01 31.66 136.68 77.11 0.00 37.51 96.12 14.76 8.66 15.08 5.75 2.88 4.10 36 I8 Intron 0 11.06 3.40 5.23 11.37 8.64 4.45 11.77 5.64 8.75 4.44 7.31 3.77 8.51 0.78 0.27 1.96 4.83 5.10 5.36 12.29 20.17 8.09 10.72 37 I8_SR1 SilentIntronRegion 0 9.27 2.30 4.49 9.49 5.79 2.08 9.15 4.88 6.75 3.78 5.85 2.86 7.65 0.57 0.07 1.90 4.79 6.21 5.02 12.51 22.44 6.00 9.10 38 I8_AR1 ActiveIntronRegion 0 17.56 2.70 6.87 10.34 8.58 5.27 16.55 5.98 9.37 4.92 8.98 6.37 13.58 0.87 0.23 3.29 9.86 5.90 8.44 11.77 23.15 5.99 15.59 39 I8_SR2 SilentIntronRegion 0 16.14 3.81 5.64 13.07 10.39 3.37 12.01 4.55 6.17 3.84 9.48 6.33 12.32 0.95 0.47 1.71 4.58 4.02 5.12 13.11 17.45 9.68 10.69 40 I8_AR2 ActiveIntronRegion 0 12.10 4.26 5.06 11.15 6.15 5.96 10.38 4.88 8.58 3.77 8.92 3.06 12.04 1.85 0.29 4.54 6.09 7.07 11.80 15.92 36.54 8.49 17.38 41 I8_SR3 SilentIntronRegion 0 6.23 2.66 4.60 8.18 4.83 3.91 9.01 5.14 8.83 3.61 6.72 2.73 6.96 0.58 0.41 1.80 5.65 6.15 6.74 14.09 27.57 6.85 14.76 42 I8_AR3 ActiveIntronRegion 0 6.04 1.70 3.80 9.51 6.52 4.23 10.98 2.97 6.27 5.10 9.17 1.51 4.75 1.16 1.12 1.24 2.01 6.09 5.51 12.63 16.93 9.28 7.19 43 I8_SR4 SilentIntronRegion 0 6.89 0.00 3.34 8.21 12.74 6.44 14.31 4.85 9.98 6.72 4.86 6.06 6.04 2.31 0.00 1.21 0.50 0.72 0.43 9.51 3.40 9.38 4.11 44 I8_AR4 ActiveIntronRegion 0 8.32 4.12 6.83 14.14 13.98 6.85 17.94 5.38 9.96 4.26 7.40 5.25 8.81 0.89 0.14 0.83 2.45 2.39 1.53 8.98 7.49 7.66 5.45 45 I8_SR5 SilentIntronRegion 0 15.70 6.21 6.70 16.97 13.16 7.30 14.13 8.44 12.17 6.27 7.85 4.24 7.39 0.28 0.29 1.82 5.40 4.10 4.26 9.99 15.12 12.94 11.23 46 I8_AR5 ActiveIntronRegion 0 15.93 4.37 3.29 12.07 15.58 5.82 12.83 11.94 17.91 7.17 5.90 1.31 5.99 0.95 0.00 1.71 2.18 2.91 2.92 15.35 13.20 8.18 7.33 47 E9_Aa NovelBoundary 0 34.75 6.38 17.74 37.82 19.86 8.01 25.08 7.72 14.00 10.66 5.16 17.86 6.82 2.47 0.00 0.00 4.77 4.44 13.08 9.01 2.90 14.21 0.00 48 ER9a ExonRegion 0 23.35 4.42 18.03 19.60 25.44 44.21 14.98 27.87 51.64 44.06 37.61 11.82 15.63 1.91 0.00 0.00 2.51 39.77 19.97 45.15 148.63 52.22 52.35 49 E9_Da NovelBoundary 0 19.93 8.22 1.83 24.81 4.33 8.63 6.01 13.68 7.44 1.61 0.00 6.30 13.31 0.00 0.00 0.00 8.13 0.00 0.00 12.21 11.12 8.76 4.18 50 E9a_E10a KnownJunction 0 27.41 2.57 20.96 27.87 16.55 73.25 24.78 21.69 61.49 48.86 37.11 0.00 0.00 0.00 0.00 0.00 0.00 44.27 27.77 58.68 98.66 61.66 72.47 51 I9 Intron 0 13.74 4.13 9.39 20.61 16.65 7.69 14.32 10.80 12.44 6.24 10.20 3.79 11.38 0.18 0.00 4.02 3.57 6.21 6.89 13.53 30.38 5.64 14.30 52 I9_AR1 ActiveIntronRegion 0 13.32 4.81 9.69 23.10 17.55 8.61 15.60 12.07 12.25 5.70 9.59 4.44 14.12 0.07 0.00 4.32 3.47 5.98 7.80 13.29 30.80 6.04 12.33 53 I9_SR1 SilentIntronRegion 1 15.31 2.19 8.66 13.59 14.32 5.09 10.79 7.21 13.23 8.00 12.23 1.93 3.44 0.52 0.00 3.23 3.97 7.06 4.30 14.53 29.75 4.52 20.46 54 E10_Aa NovelBoundary 0 87.35 27.63 8.69 30.80 42.28 14.37 37.98 18.94 16.87 10.91 10.37 0.00 20.78 0.00 8.90 11.96 4.77 8.71 34.54 33.94 56.90 6.25 26.12 55 ER10a ExonRegion 1 46.49 21.09 38.19 52.60 48.41 98.21 46.23 46.11 87.79 59.49 122.47 32.92 120.80 65.04 3.51 65.94 102.60 81.17 44.41 90.30 216.86 62.43 107.12 56 E10a_E11a KnownJunction 1 82.90 35.59 44.23 57.14 82.94 139.24 89.34 47.60 87.30 58.94 130.19 24.61 93.50 80.05 4.45 84.00 113.14 92.73 53.18 105.14 208.13 98.03 89.72 57 ER11a ExonRegion 0 21.93 13.77 25.65 39.61 39.04 81.95 36.64 40.18 64.93 42.66 78.58 44.22 79.58 48.11 0.62 41.90 102.17 66.61 39.27 62.78 121.46 48.02 48.38 58 E11_Da NovelBoundary 0 10.96 0.00 10.91 5.09 3.48 2.90 0.00 4.97 2.98 4.51 1.95 0.00 20.94 2.30 0.00 4.36 12.34 2.07 9.13 6.14 9.02 0.00 8.45 59 E11a_E12a KnownJunction 0 23.34 9.01 20.40 34.36 41.00 85.01 32.02 49.25 71.93 38.47 79.44 50.27 53.73 29.61 0.00 28.03 90.51 73.25 35.58 59.70 113.36 46.78 27.83 60 ER12a ExonRegion 0 24.10 18.27 18.67 32.10 43.18 67.89 28.70 27.75 60.96 33.42 86.28 31.93 55.29 38.01 3.97 30.53 56.81 51.07 31.31 69.68 138.25 35.66 52.42 61 E12a_E13a KnownJunction 0 25.34 14.47 10.56 45.08 15.20 69.68 34.45 7.72 60.36 36.18 57.44 30.91 43.18 49.09 0.00 32.04 48.99 56.92 33.41 44.55 175.51 45.07 49.00 62 ER13a ExonRegion 0 18.93 11.93 13.07 30.47 19.46 38.54 19.66 19.31 36.97 36.67 60.03 24.52 38.36 32.93 2.45 21.04 39.22 47.95 22.20 49.37 111.89 34.28 35.95 63 E13a_E14a KnownJunction 0 20.82 6.64 13.48 31.06 24.36 21.58 20.62 17.99 30.21 20.98 65.23 24.76 33.28 34.96 0.00 24.61 53.58 21.72 7.81 6.33 142.34 19.41 26.72 64 I13_AR3 ActiveIntronRegion 0 7.66 2.97 17.92 12.09 1.67 1.57 6.43 5.35 8.30 11.76 1.82 2.11 6.54 1.36 0.00 2.34 5.16 2.74 3.96 5.19 6.39 0.09 2.90 65 I13_AR4 ActiveIntronRegion 0 0.00 6.61 15.16 14.14 7.36 1.83 14.07 5.83 2.62 8.03 1.93 4.33 15.24 2.44 0.00 4.46 6.60 1.85 0.00 6.91 4.41 2.08 0.00 66 I13_AR5 ActiveIntronRegion 0 2.27 5.96 14.88 15.97 2.68 1.83 13.62 6.54 2.82 7.62 1.79 6.49 0.34 3.25 0.00 3.18 8.25 1.85 0.00 8.51 4.41 2.08 0.00 67 I13_AR6 ActiveIntronRegion 0 13.76 4.75 17.09 15.07 0.00 1.63 12.65 4.03 4.19 4.91 0.00 4.33 0.00 3.16 0.00 2.97 8.99 1.85 2.65 5.79 2.20 1.50 0.00 68 I13_AR7 ActiveIntronRegion 0 19.05 10.17 26.01 14.08 0.00 0.00 11.47 4.42 6.18 5.10 0.00 2.41 0.00 4.33 0.00 2.97 8.80 1.03 3.19 4.26 0.00 0.00 1.31 69 I13_AR8 ActiveIntronRegion 0 23.89 9.88 23.81 12.27 0.00 0.00 15.51 3.46 6.18 4.42 0.00 0.00 4.02 4.87 0.00 0.00 6.60 0.00 3.19 2.74 0.00 0.00 2.94 70 ER14a ExonRegion 0 40.99 22.10 33.29 49.25 65.22 85.82 40.93 33.61 56.19 58.10 73.89 26.47 47.84 53.41 4.14 38.46 93.17 71.50 29.67 86.05 140.25 61.58 61.24 71 E14a_E15a KnownJunction 0 56.31 49.33 35.36 55.97 44.65 91.82 30.38 50.52 64.87 80.10 63.54 31.51 59.25 74.28 8.78 31.44 84.24 66.66 27.67 114.16 113.98 69.01 45.75 72 ER15a ExonRegion 0 30.47 35.08 34.32 57.47 51.26 64.79 39.13 40.97 73.48 77.51 71.63 27.01 54.79 54.33 10.88 37.35 99.78 69.33 28.81 97.27 148.17 47.04 50.72 73 E15_Da NovelBoundary 0 3.78 3.35 1.09 6.89 0.00 0.00 1.85 6.28 6.68 2.90 2.53 0.00 7.14 6.89 0.00 0.00 18.42 6.47 16.47 5.82 2.72 7.84 3.93 74 E15a_E16a KnownJunction 0 34.52 25.39 54.37 70.65 49.75 73.20 59.49 39.14 74.54 79.62 84.13 30.61 68.83 45.79 0.00 31.62 78.63 98.08 16.75 130.58 155.49 68.70 71.36 75 E15a_E16b KnownJunction 0 0.00 3.35 0.00 1.56 0.00 0.00 0.00 1.81 0.00 7.90 2.63 0.00 0.00 0.00 0.00 0.00 4.77 4.19 0.00 2.56 6.30 0.00 0.00 76 ER16a ExonRegion 0 26.46 27.45 46.56 67.80 50.84 66.02 37.73 39.75 79.36 76.84 84.08 37.88 72.70 48.32 2.90 31.21 88.30 85.92 27.08 131.38 161.97 73.96 59.47 77 ER16b ExonRegion 0 43.07 35.49 41.37 64.69 48.77 66.50 22.85 67.19 94.29 103.79 102.52 43.40 62.55 73.00 7.22 33.36 114.25 102.23 40.85 134.92 177.98 85.81 68.28 78 E16_Da NovelBoundary 0 0.00 0.00 7.92 2.06 3.99 0.00 8.44 7.48 6.71 11.47 1.95 0.00 6.01 0.00 6.30 14.95 0.00 6.63 0.00 2.49 18.29 3.12 8.02 79 E16a_E17a KnownJunction 0 56.23 26.84 40.65 70.39 54.58 100.79 41.82 85.64 86.69 104.60 85.34 36.76 61.52 81.94 8.90 30.76 101.92 93.60 33.98 113.71 203.62 86.09 59.07 80 E17_Aa NovelBoundary 0 2.96 2.76 6.42 23.41 8.66 16.01 8.21 12.28 4.51 5.48 2.26 6.30 0.00 4.77 0.00 4.36 12.25 2.57 0.00 5.82 5.37 3.12 11.35 81 ER17a ExonRegion 0 39.92 33.27 53.29 72.10 58.47 73.27 45.77 55.43 84.95 109.41 88.51 41.76 66.02 55.43 14.01 32.08 99.74 75.20 28.64 116.12 188.57 67.12 59.06 82 E17a_E18a KnownJunction 0 51.79 55.78 61.62 69.72 51.19 84.67 52.51 61.28 100.87 96.92 79.23 70.52 147.23 67.63 14.09 40.84 138.66 106.00 35.86 136.78 184.65 86.71 81.78 83 ER18a ExonRegion 0 35.86 43.56 52.09 70.35 41.56 63.50 38.56 57.73 81.52 94.13 88.88 51.33 76.08 71.78 11.54 31.64 136.64 100.44 25.96 123.08 181.85 75.32 65.01 84 E18a_E19a KnownJunction 1 6.37 24.34 41.42 61.60 34.72 43.04 24.78 71.43 92.36 83.25 43.17 44.41 101.78 50.86 6.18 33.50 62.37 79.05 27.39 128.47 112.06 55.11 42.94 85 ER19a ExonRegion 0 53.01 50.09 58.19 78.73 81.85 87.19 51.82 54.98 83.37 94.28 78.74 37.15 71.26 60.70 10.79 35.98 108.72 59.24 33.79 92.55 131.62 74.32 52.97 86 E19_Da KnownBoundary 0 74.75 116.49 24.72 97.02 115.28 161.10 93.98 50.93 75.87 86.25 50.54 24.16 90.09 26.43 4.45 20.59 40.02 20.44 12.14 79.00 64.87 90.87 39.69 87 ER19b ExonRegion 0 59.81 58.85 50.64 76.11 77.10 66.10 42.98 40.36 51.18 53.66 22.01 16.44 24.58 14.19 4.69 9.52 25.74 17.59 17.33 45.29 27.88 39.74 23.42