Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CPEB2 Gene 0 33.45 16.78 21.95 23.41 61.62 72.20 45.83 54.72 53.90 44.00 45.70 71.69 63.94 44.39 28.93 27.77 22.34 24.23 9.18 17.16 40.02 46.84 19.76 2 259997 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 345451 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 382395 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 382401 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 442003 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 382391 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 IG40_SR1 SilentIntergenicRegion 0 0.10 0.28 0.59 0.56 0.12 1.70 0.67 1.31 2.30 2.85 9.94 2.68 3.08 8.21 3.37 3.30 5.20 3.96 1.92 0.99 11.45 2.03 2.45 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 2.35 2.07 10.02 2.57 2.57 0.00 0.60 1.70 0.18 0.24 7.91 1.78 0.00 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 0.00 0.00 6.82 2.47 0.00 0.00 4.30 6.22 0.00 2.56 8.34 3.06 0.00 11 ER1b ExonRegion 1 0.00 0.00 0.00 0.83 1.09 2.10 2.45 3.10 3.72 0.76 12.74 9.80 9.04 20.80 4.27 5.83 7.66 13.10 2.47 2.16 28.31 5.50 2.47 12 E1_Da KnownBoundary 0 0.00 0.00 0.00 1.40 0.00 2.33 0.00 0.00 2.84 1.21 11.27 7.05 0.00 17.01 8.90 3.25 3.83 17.70 0.00 3.00 16.93 2.76 0.00 13 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 14 ER1c ExonRegion 0 0.00 1.21 0.31 0.00 0.00 0.95 0.02 1.89 1.35 1.38 3.59 0.34 4.91 5.61 9.34 5.67 7.48 2.60 0.00 0.53 20.07 0.10 2.48 15 E1_Ac KnownBoundary 0 0.00 2.96 1.36 1.73 0.00 2.67 0.00 4.56 1.22 1.16 4.53 0.00 6.82 2.35 4.45 15.89 17.48 3.40 0.00 0.00 26.44 2.33 0.00 16 ER1d ExonRegion 0 1.18 1.05 3.11 1.29 5.58 7.52 5.99 3.85 11.02 8.93 11.73 14.33 27.15 27.56 16.54 16.47 17.16 21.13 2.02 7.29 36.50 13.14 18.93 17 E1b_E2a KnownJunction 0 3.63 3.29 8.99 0.00 12.05 26.12 8.17 19.14 16.96 24.20 43.80 6.00 20.13 53.98 33.75 27.43 25.34 29.35 0.00 14.96 102.18 28.53 37.99 18 ER2a ExonRegion 0 7.58 3.12 12.73 7.92 12.69 32.31 22.54 24.97 38.93 30.96 62.78 54.36 43.04 60.08 32.32 41.80 31.48 45.43 8.98 22.70 73.48 23.58 22.54 19 E2a_E3a KnownJunction 0 0.00 3.22 0.00 0.00 0.00 10.73 0.00 7.02 17.27 4.11 17.16 20.26 25.65 11.54 0.00 14.44 0.00 11.40 0.00 2.75 13.16 0.00 0.00 20 E2a_E4a KnownJunction 0 3.78 3.22 6.80 5.06 15.87 25.84 17.05 35.00 26.85 18.78 34.48 41.86 33.93 16.42 4.45 15.89 35.81 16.00 4.80 17.71 16.99 34.78 12.12 21 E2b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 2.50 3.97 1.93 2.43 1.48 7.74 0.00 0.00 7.42 0.00 7.60 8.98 3.86 4.24 0.00 6.30 5.02 0.00 22 ER2b ExonRegion 0 0.00 0.00 2.04 0.00 5.35 2.24 3.53 3.26 3.71 1.15 9.45 0.00 0.52 8.30 2.90 7.93 6.60 3.90 3.19 0.00 4.41 6.71 0.00 23 ER3a ExonRegion 0 1.20 1.83 0.63 3.68 4.40 30.58 6.00 4.23 19.75 10.74 20.21 28.86 9.59 17.56 7.96 13.54 3.41 20.12 2.73 7.26 13.83 2.22 3.79 24 E3a_E4a KnownJunction 0 0.00 0.00 1.80 1.53 0.00 30.38 0.00 4.35 17.36 13.86 7.79 12.60 37.01 20.48 6.06 4.10 3.65 22.22 4.80 2.68 10.93 6.25 3.76 25 I3_SR1 SilentIntronRegion 0 1.47 1.05 1.79 3.22 3.85 1.79 10.11 3.85 4.55 1.84 5.53 16.73 6.75 2.68 2.67 1.76 1.12 0.96 1.28 0.78 1.01 1.08 0.48 26 I3_AR2 ActiveIntronRegion 0 12.83 3.91 18.79 2.96 2.88 1.17 11.19 1.64 8.21 2.90 7.35 7.31 5.80 1.16 3.70 3.72 7.59 0.00 0.40 3.91 1.71 1.64 5.18 27 I3_AR3 ActiveIntronRegion 0 9.28 0.00 14.23 8.18 4.94 0.00 6.11 5.72 4.56 5.73 11.15 8.66 4.69 2.50 10.71 6.86 10.41 1.85 9.31 2.13 3.05 0.00 2.94 28 I3_AR4 ActiveIntronRegion 0 4.37 0.53 12.99 3.60 5.63 1.14 9.29 5.19 8.13 2.41 9.60 11.28 2.58 2.77 3.37 2.12 2.55 0.60 1.17 1.17 0.98 1.09 1.94 29 I3_AR5 ActiveIntronRegion 0 2.26 0.55 13.16 2.50 3.50 1.85 4.58 4.57 4.38 2.89 2.41 7.39 4.51 1.00 2.83 0.94 0.90 0.00 0.43 0.13 0.41 1.13 0.00 30 E4_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 3.71 1.73 0.00 0.00 8.05 6.30 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 3.12 12.46 31 ER4a ExonRegion 0 7.51 4.98 14.09 6.32 12.94 49.01 26.32 34.87 52.69 30.90 68.95 76.46 61.43 62.86 22.70 42.16 40.63 35.78 23.84 28.06 35.21 37.78 26.49 32 E4a_E5a KnownJunction 0 7.56 8.68 15.35 6.86 11.97 55.65 30.47 22.02 56.51 29.76 56.80 56.12 59.74 78.82 50.68 54.94 43.67 35.57 18.92 44.93 48.06 23.33 30.22 33 ER5a ExonRegion 1 6.31 7.70 14.01 8.82 6.72 37.86 16.64 25.96 52.63 32.83 61.63 86.67 57.02 67.42 16.55 49.42 32.69 35.32 11.62 31.62 43.38 30.19 31.04 34 E5a_E6a KnownJunction 0 0.00 5.06 13.25 3.90 12.65 27.03 21.95 23.21 29.60 18.78 11.37 35.11 0.00 11.42 0.00 8.12 0.00 25.83 4.61 37.20 23.41 11.63 0.00 35 E5a_E7a KnownJunction 0 7.04 0.00 6.36 3.86 0.00 0.00 3.44 2.55 5.18 1.48 55.54 67.82 33.60 43.62 4.45 15.38 41.80 0.00 0.00 0.00 22.98 11.82 12.55 36 E6a_E7a KnownJunction 0 0.00 2.50 3.67 3.93 12.99 36.40 10.69 20.09 24.31 19.18 9.90 6.30 0.00 4.89 4.45 10.34 0.00 11.57 9.32 12.72 14.33 6.25 20.40 37 ER6a ExonRegion 1 0.00 2.37 9.60 6.30 15.39 28.88 12.52 28.23 35.30 29.72 7.49 25.62 1.95 7.38 4.23 8.42 0.00 20.86 9.03 27.39 25.25 10.94 12.73 38 I6 Intron 0 2.32 0.45 1.90 1.88 1.99 2.05 7.97 2.58 3.00 1.56 5.69 19.29 19.76 4.98 2.15 5.10 4.34 2.19 0.52 2.16 5.69 3.93 1.65 39 I6_SR1 SilentIntronRegion 0 6.02 1.62 2.81 1.27 2.89 2.82 8.52 1.91 2.20 2.14 4.62 18.60 16.66 3.19 4.46 6.43 5.07 2.04 0.73 1.82 5.26 2.85 1.50 40 I6_AR1 ActiveIntronRegion 0 6.59 0.48 1.30 0.24 3.07 2.26 12.46 2.50 1.53 0.41 3.76 20.48 17.07 4.30 3.29 7.05 3.19 2.08 0.00 3.43 6.08 3.29 1.36 41 I6_SR2 SilentIntronRegion 0 1.20 0.23 1.38 1.88 1.61 1.73 7.22 2.31 2.93 1.38 5.38 19.08 20.57 5.02 1.67 4.44 4.04 2.06 0.53 2.05 4.70 3.51 1.64 42 I6_AR2 ActiveIntronRegion 0 3.50 1.79 1.54 3.60 0.00 3.22 6.19 2.71 5.49 2.31 8.13 37.99 17.95 2.38 3.10 4.10 15.02 1.98 0.00 5.03 10.37 8.77 0.86 43 I6_AR3 ActiveIntronRegion 1 8.47 0.00 3.68 5.45 0.00 9.17 8.74 2.07 4.69 3.44 4.83 53.25 35.64 7.80 5.80 2.97 12.21 3.70 0.00 2.13 15.43 9.38 0.00 44 I6_AR4 ActiveIntronRegion 1 5.52 0.00 3.68 6.64 2.33 11.72 9.27 2.18 4.67 5.34 6.30 52.33 33.65 8.54 4.67 3.10 7.32 4.02 0.00 0.65 14.95 12.14 0.00 45 I6_AR5 ActiveIntronRegion 0 3.00 1.07 1.85 7.90 4.83 3.02 10.81 2.57 5.58 3.95 4.60 29.74 15.62 7.66 1.14 3.00 3.79 3.13 0.00 2.42 6.83 9.58 0.63 46 I6_SR3 SilentIntronRegion 0 3.08 0.30 5.19 0.82 2.21 2.55 9.30 5.70 4.16 1.75 11.02 13.54 20.16 6.33 2.42 8.47 5.55 3.06 0.70 2.41 12.39 5.84 2.74 47 E7_Aa NovelBoundary 0 0.00 0.00 5.68 4.13 0.00 0.00 2.25 0.00 1.79 1.26 7.63 6.30 12.66 9.89 6.30 0.00 0.00 2.32 0.00 0.00 22.86 8.02 0.00 48 ER7a ExonRegion 1 12.72 6.89 17.66 15.57 19.56 47.08 31.26 31.95 54.54 24.96 71.73 79.20 69.61 57.91 16.76 37.54 36.19 43.60 15.85 25.21 63.29 41.34 25.23 49 E7a_E8a KnownJunction 0 0.00 18.29 11.18 4.99 11.21 58.83 28.88 37.83 52.78 22.03 47.33 80.58 67.04 36.55 10.63 36.66 33.94 26.07 13.93 15.40 55.85 33.62 32.78 50 ER8a ExonRegion 0 16.93 8.20 11.53 12.84 18.79 45.82 27.85 42.87 52.51 21.29 56.33 87.12 51.49 50.58 19.15 32.69 38.80 33.12 8.88 20.31 61.41 31.83 22.22 51 E8_Da NovelBoundary 0 0.00 0.00 3.67 1.76 0.00 0.00 20.27 4.48 1.59 0.00 4.58 6.30 13.31 4.94 0.00 0.00 0.00 2.57 0.00 0.00 12.11 3.12 0.00 52 E8a_E9a KnownJunction 0 21.26 5.85 13.45 10.92 24.02 32.65 33.92 44.98 62.21 21.44 65.65 167.15 67.20 50.21 15.33 26.23 40.39 22.47 9.60 20.90 23.23 26.09 19.21 53 I8_SR1 SilentIntronRegion 0 1.39 0.00 0.54 2.12 3.99 1.09 6.92 2.69 3.84 1.79 1.44 10.06 18.55 5.94 0.31 1.77 0.00 1.43 0.95 4.12 2.11 3.50 1.31 54 I8_AR1 ActiveIntronRegion 0 0.56 0.00 2.41 0.67 1.77 5.15 6.33 1.28 1.52 0.56 6.70 13.21 15.62 9.84 1.83 2.94 2.76 2.98 0.53 2.11 10.03 3.35 1.95 55 ER9a ExonRegion 0 17.16 8.15 24.41 8.10 24.94 53.44 33.23 38.59 53.84 25.40 71.50 92.99 55.49 61.43 19.48 38.71 54.42 39.22 11.16 17.59 64.20 38.69 26.73 56 E9a_E10a KnownJunction 0 29.56 19.34 1.63 11.62 38.37 47.59 31.71 39.27 48.81 23.77 102.18 92.13 44.32 57.86 44.87 25.12 47.50 41.54 8.66 29.21 67.21 34.90 20.06 57 ER10a ExonRegion 0 15.20 14.46 11.87 9.42 25.36 53.18 22.69 36.61 44.25 23.91 75.16 92.88 42.62 68.11 28.05 55.67 49.03 46.26 5.54 13.71 106.26 39.68 28.52 58 E10a_E11a KnownJunction 1 3.19 25.19 19.46 5.26 42.53 56.84 25.35 31.63 30.93 24.87 65.91 49.67 87.17 79.46 19.16 60.33 38.52 49.41 4.42 20.39 98.16 47.09 40.89 59 ER11a ExonRegion 0 20.97 13.05 15.32 7.11 27.29 45.64 24.71 32.24 39.18 22.94 60.33 52.36 41.41 68.08 27.58 45.51 37.78 62.41 15.82 22.08 126.66 33.78 39.40 60 E11a_E12a KnownJunction 0 53.19 16.90 15.14 10.69 37.44 34.01 47.47 31.75 29.20 15.02 46.33 0.00 14.12 34.32 19.90 37.94 20.57 79.71 30.78 22.12 98.53 30.19 57.11 61 I11_AR1 ActiveIntronRegion 0 0.87 0.13 1.02 1.10 1.42 2.38 2.92 0.92 4.61 0.92 5.49 17.39 14.89 4.69 0.83 2.70 1.82 1.16 0.53 1.90 3.29 5.00 1.67 62 I11_AR3 ActiveIntronRegion 0 0.31 0.00 0.00 2.54 3.58 1.56 1.99 7.03 4.76 0.25 4.36 11.00 18.70 3.23 0.00 0.00 2.23 1.35 0.04 0.00 1.22 5.91 3.06 63 I11_AR4 ActiveIntronRegion 0 1.52 0.19 0.67 1.24 3.70 2.54 4.13 2.28 5.06 1.42 5.41 15.61 9.87 5.39 0.46 0.55 2.44 1.43 1.16 0.00 1.63 3.53 1.47 64 E12_Aa NovelBoundary 0 14.08 0.00 3.05 5.03 15.03 8.46 15.90 8.63 7.67 1.67 0.00 0.00 13.96 7.24 0.00 4.19 9.54 5.14 0.00 0.00 15.38 0.00 4.35 65 ER12a ExonRegion 0 43.68 21.48 26.70 30.34 81.54 88.87 57.21 68.04 62.29 54.13 45.05 79.92 74.58 43.46 32.94 26.31 19.74 19.97 9.31 17.49 31.98 56.23 19.37 66 ER12b ExonRegion 0 8.47 0.00 0.00 1.36 5.35 0.00 0.00 0.00 1.24 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00