Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM128 Gene 0 24.68 59.99 36.37 51.41 24.95 72.46 35.54 29.37 51.48 42.87 44.35 32.90 23.50 39.31 31.76 41.52 29.44 33.15 37.60 42.50 26.07 43.96 33.99 2 382753 Transcript 0 3.39 7.29 8.74 11.05 1.87 7.65 7.13 5.19 19.27 13.73 5.16 7.50 4.14 6.24 12.46 4.69 2.60 5.48 3.26 11.62 5.77 3.15 2.13 3 254742 Transcript 0 3.27 6.33 7.12 8.49 1.93 6.60 2.97 2.36 7.13 6.45 2.53 2.69 8.62 4.65 9.44 7.40 0.87 5.43 3.65 2.94 1.16 3.13 1.92 4 ER1a ExonRegion 0 3.82 5.64 3.91 3.96 0.09 10.65 10.68 2.29 4.22 1.89 0.75 0.00 0.00 5.24 7.11 6.14 1.17 1.01 2.47 7.07 0.85 1.28 4.26 5 ER1b ExonRegion 0 45.90 108.36 31.62 48.94 22.87 185.16 85.82 25.81 53.84 47.54 33.81 2.41 1.33 35.67 33.88 75.31 36.50 43.04 87.81 62.67 44.80 68.23 77.85 6 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.19 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 E1a_E2a KnownJunction 0 2.96 8.95 13.57 18.15 3.65 4.66 3.58 8.09 34.32 25.57 9.58 15.00 8.28 7.24 17.80 3.25 4.02 9.95 4.05 16.17 10.69 5.02 0.00 8 ER1c ExonRegion 0 3.60 7.81 4.03 4.52 2.47 8.17 7.20 1.16 2.85 3.27 0.69 1.77 3.61 4.76 2.61 3.48 2.62 2.62 2.68 1.13 1.08 1.54 2.34 9 E1_Db NovelBoundary 0 24.00 22.10 13.31 19.98 0.00 14.88 10.42 6.74 7.52 8.19 11.69 35.86 33.11 29.02 33.50 25.38 41.05 6.26 4.52 16.68 5.62 13.78 4.35 10 E1b_E2a KnownJunction 0 6.22 11.18 17.33 20.94 3.31 11.64 1.72 5.91 18.55 16.06 6.90 6.30 22.24 9.18 25.71 18.71 0.00 13.68 8.28 6.52 2.41 7.84 3.41 11 I1 Intron 0 10.14 6.88 5.66 9.73 6.79 4.65 7.83 2.90 3.11 7.71 8.71 30.64 19.74 8.59 7.69 5.86 7.44 0.52 0.90 5.40 1.85 5.87 2.48 12 I1_SR1 SilentIntronRegion 0 10.36 7.03 5.77 9.95 6.89 4.76 8.01 2.95 3.18 7.87 8.89 31.33 20.19 8.78 7.87 5.99 7.61 0.53 0.92 5.52 1.89 6.00 2.54 13 E2_Aa NovelBoundary 0 19.56 16.31 15.37 15.55 12.05 22.66 11.26 10.56 4.43 11.12 23.53 62.42 12.66 9.83 6.30 12.05 16.64 0.00 0.00 11.63 11.49 8.51 18.18 14 ER2a ExonRegion 0 30.90 69.28 90.44 127.97 55.55 60.12 37.79 70.64 126.12 112.95 132.61 75.89 54.43 96.49 65.93 138.46 82.10 83.81 130.60 121.76 79.67 131.42 105.84 15 E2_Da NovelBoundary 0 0.00 0.00 3.22 16.58 0.00 2.84 3.97 2.55 1.79 4.11 10.21 48.62 0.00 2.41 0.00 7.52 12.81 4.35 14.40 8.18 5.44 8.14 3.67 16 E2a_E3a KnownJunction 0 24.00 102.68 95.27 203.90 102.38 109.31 66.95 79.03 162.50 109.09 79.70 114.19 68.34 64.34 91.35 117.92 101.64 89.29 90.07 137.87 49.24 103.61 81.52 17 I2 Intron 0 3.13 3.50 5.14 9.51 6.13 5.72 6.97 3.81 6.56 6.13 5.95 8.51 7.68 11.55 7.85 13.37 9.56 5.99 5.68 7.07 3.30 3.34 4.34 18 I2_SR1 SilentIntronRegion 0 2.39 2.91 4.05 8.13 4.45 4.25 6.88 3.05 4.78 4.85 4.94 7.04 6.65 11.25 7.48 12.08 9.56 5.77 5.70 7.55 3.91 2.58 2.91 19 I2_AR1 ActiveIntronRegion 0 2.47 2.76 7.93 12.67 9.82 10.96 6.32 4.11 13.41 8.54 9.94 9.95 9.65 13.31 6.56 19.44 10.29 7.31 6.33 4.44 2.41 3.35 5.74 20 I2_SR2 SilentIntronRegion 0 8.19 7.88 6.78 12.13 9.50 5.62 8.55 7.48 5.64 9.38 5.30 14.30 10.29 10.56 11.93 11.03 8.52 5.19 4.63 8.58 1.42 7.40 9.95 21 E3_Aa NovelBoundary 0 13.48 17.89 11.15 28.33 16.30 16.64 6.32 12.03 8.39 4.62 12.69 24.46 32.63 17.13 16.56 11.62 11.13 10.90 12.80 14.57 0.00 8.82 0.00 22 ER3a ExonRegion 0 57.12 181.22 131.41 194.34 100.11 279.76 134.13 98.23 171.70 141.73 168.93 138.95 86.54 116.21 101.07 107.50 109.01 98.36 86.59 166.36 72.64 146.71 74.73 23 E3_Da NovelBoundary 0 3.78 6.58 2.81 18.08 4.33 9.99 12.06 12.40 11.49 11.77 15.27 24.91 18.34 19.54 21.39 3.42 4.49 15.71 0.00 9.20 3.15 20.02 11.78 24 E3a_E4a KnownJunction 0 133.58 222.53 146.77 259.24 71.39 168.82 55.65 128.85 212.58 182.23 166.04 134.89 73.70 179.06 175.91 132.44 147.64 144.17 144.29 224.41 80.80 226.26 105.08 25 I3 Intron 0 14.20 10.26 12.97 40.39 78.07 33.80 22.13 33.17 41.92 30.30 7.58 16.61 14.99 7.90 4.10 8.30 5.98 5.46 7.49 18.14 2.70 11.23 6.33 26 I3_SR1 SilentIntronRegion 0 14.23 10.28 13.00 40.47 78.22 33.85 22.18 33.23 42.00 30.36 7.59 16.64 15.02 7.91 4.10 8.31 5.99 5.47 7.51 18.18 2.70 11.25 6.34 27 E4_Aa NovelBoundary 0 23.86 29.47 31.90 81.74 182.09 86.09 55.03 85.02 93.03 68.61 4.63 19.96 21.10 11.95 0.00 12.82 7.48 18.49 17.60 42.63 0.00 22.78 0.00 28 ER4a ExonRegion 0 90.14 186.27 131.94 209.45 96.33 184.31 88.75 131.47 208.43 166.77 178.41 112.45 80.55 149.96 132.61 129.33 101.06 114.59 117.77 141.07 93.71 145.16 101.52 29 E4_Da NovelBoundary 1 38.97 20.79 40.09 77.35 200.34 36.51 63.20 92.33 94.50 66.64 37.38 50.27 26.46 23.31 21.01 31.27 0.00 17.20 25.79 70.18 0.00 19.84 0.00 30 E4a_E5a KnownJunction 0 98.24 167.47 122.05 119.63 74.79 187.79 69.20 80.34 133.01 120.56 105.08 132.04 101.94 140.21 112.49 90.75 102.57 113.67 109.74 117.67 75.92 99.75 86.56 31 I4 Intron 0 47.50 55.01 51.76 111.25 168.43 89.47 50.74 93.91 105.47 61.48 27.94 24.00 16.00 33.00 24.91 33.87 23.42 48.18 46.76 60.41 14.56 29.38 18.62 32 I4_SR1 SilentIntronRegion 0 18.96 16.98 16.95 45.56 92.93 51.00 29.73 35.46 48.36 35.26 20.75 25.52 25.26 17.29 9.37 27.48 11.81 27.54 18.11 23.63 6.57 13.67 8.76 33 I4_SR2 SilentIntronRegion 0 21.72 17.73 24.60 60.52 114.42 39.54 27.77 56.25 56.69 36.32 13.97 7.05 6.52 14.20 11.54 15.57 5.83 17.32 11.29 30.70 2.41 15.83 10.21 34 I4_AR2 ActiveIntronRegion 0 64.93 79.39 71.28 147.94 208.98 119.10 65.22 123.54 139.25 78.14 35.37 30.47 17.57 44.45 34.12 42.84 33.36 65.70 68.09 81.47 21.41 38.74 24.46 35 E5_Aa NovelBoundary 0 38.90 79.72 41.13 64.43 102.04 109.60 63.51 157.19 72.37 116.53 9.53 18.61 20.29 31.26 13.35 31.36 12.62 48.50 59.39 55.54 14.52 25.78 25.69 36 ER5a ExonRegion 0 19.20 44.66 15.13 16.13 8.67 43.82 18.99 12.10 22.39 17.41 13.18 16.86 13.20 20.72 15.76 17.88 9.64 17.95 15.00 12.12 10.90 16.78 17.78 37 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00