Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IDUA Gene 0 22.43 10.15 59.42 60.93 5.65 28.54 2.65 19.33 31.98 4.99 1.98 1.76 6.38 15.93 27.44 7.03 6.68 41.69 20.92 23.32 209.24 69.88 74.76 2 247933 Transcript 0 26.83 8.32 57.24 50.52 4.84 24.84 3.50 15.09 25.14 6.12 1.03 1.26 8.14 12.18 23.57 1.85 9.62 33.68 13.19 16.15 204.18 55.76 53.40 3 453894 Transcript 0 3.72 1.56 6.32 5.38 0.92 5.58 0.43 0.99 3.11 0.52 0.01 0.03 0.52 1.94 2.08 0.47 0.05 4.56 2.86 0.95 9.81 2.92 5.91 4 ER1a ExonRegion 0 5.15 1.29 3.87 1.11 0.00 14.74 1.37 3.44 2.37 0.43 0.00 0.00 0.00 2.59 5.80 1.23 1.87 4.28 4.73 3.35 46.55 5.84 22.57 5 E1_Da NovelBoundary 0 3.19 6.64 0.00 0.00 0.00 8.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 14.40 3.26 2.59 0.00 0.00 6 E1a_E2a KnownJunction 0 6.67 0.00 16.56 7.16 0.00 5.28 0.00 8.21 16.03 3.09 0.00 0.00 0.00 7.12 23.86 0.00 14.21 12.39 19.95 9.33 125.04 13.84 28.17 7 E1a_E3a KnownJunction 0 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 8 ER2a ExonRegion 0 3.77 1.79 19.87 20.77 0.25 6.55 1.15 10.80 10.83 3.27 0.00 0.00 0.47 7.53 14.65 1.12 4.05 12.53 10.89 7.48 139.54 38.82 40.34 9 E2a_E3a KnownJunction 0 17.34 12.17 36.93 38.92 3.74 30.61 8.21 9.61 19.33 10.61 0.00 0.00 6.82 12.18 30.41 0.00 12.44 9.33 13.74 9.14 219.25 72.99 53.69 10 Ix Intron 0 7.90 5.42 11.69 16.92 2.50 16.02 2.74 3.61 17.67 0.23 2.83 2.97 5.32 13.66 12.79 6.34 5.06 29.27 16.14 31.49 38.78 11.39 18.21 11 Ix_AR1 ActiveIntronRegion 0 7.92 5.44 11.72 16.97 2.50 16.06 2.74 3.62 17.71 0.23 2.84 2.98 5.33 13.69 12.82 6.36 5.07 29.34 16.18 31.57 38.88 11.42 18.25 12 Ix Intron 0 7.85 10.58 15.43 21.76 3.03 12.09 1.43 3.85 12.14 0.62 2.19 4.11 3.67 8.75 13.35 5.21 3.74 30.14 18.05 26.31 28.14 11.70 14.07 13 Ix_AR1 ActiveIntronRegion 0 7.87 10.60 15.45 21.80 3.04 12.11 1.44 3.86 12.16 0.62 2.20 4.11 3.67 8.77 13.37 5.22 3.75 30.20 18.09 26.36 28.20 11.72 14.09 14 Ix Intron 0 3.55 6.82 11.74 13.91 4.49 7.94 1.66 3.60 7.20 0.48 2.70 1.49 1.08 8.64 10.37 2.91 3.69 22.98 10.68 17.23 16.01 6.40 11.90 15 Ix_AR1 ActiveIntronRegion 0 3.57 6.86 11.80 13.98 4.51 7.99 1.67 3.61 7.24 0.48 2.72 1.50 1.09 8.68 10.43 2.92 3.71 23.10 10.73 17.32 16.10 6.44 11.96 16 I2 Intron 0 7.11 5.93 9.00 9.09 2.86 6.09 1.17 2.60 4.84 0.44 1.02 1.16 1.87 3.72 6.84 2.05 1.91 17.46 7.91 11.72 13.76 5.48 6.93 17 I2_AR1 ActiveIntronRegion 0 10.10 12.48 8.30 11.39 4.06 9.45 1.91 1.37 5.30 0.65 2.78 1.81 1.76 5.25 11.48 2.70 1.25 19.55 9.41 15.48 13.85 9.32 8.23 18 I2_SR2 SilentIntronRegion 0 7.06 5.44 9.74 9.69 3.03 5.76 0.80 2.77 5.08 0.24 0.75 0.95 1.54 3.80 6.40 1.86 2.49 16.92 8.26 11.31 12.36 4.43 7.18 19 I2_SR3 SilentIntronRegion 0 11.65 6.42 14.27 13.57 2.85 6.47 2.15 3.24 7.88 0.80 1.00 2.08 4.27 4.76 9.65 3.46 1.70 27.72 12.92 17.06 25.22 8.93 7.45 20 ER3a ExonRegion 0 16.83 18.68 64.19 78.43 11.17 49.85 7.11 23.94 42.98 8.19 0.00 0.00 8.45 22.74 26.95 6.91 13.36 52.73 19.19 25.95 313.62 118.59 76.18 21 E3_Da NovelBoundary 0 6.67 22.17 25.93 18.61 0.00 2.90 1.81 1.89 19.30 3.04 0.00 0.00 0.00 7.89 4.45 8.54 8.51 19.23 4.80 14.45 62.77 21.68 22.79 22 E3a_E4a KnownJunction 0 35.49 24.86 80.81 89.70 4.24 36.68 4.42 31.54 47.22 8.00 2.16 0.00 13.64 12.07 13.35 6.75 11.87 55.09 30.21 46.47 449.80 139.31 65.81 23 E3a_E5a NovelJunction 0 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 19.65 3.12 3.76 24 I3_SR1 SilentIntronRegion 0 8.25 2.76 12.46 13.34 1.24 17.68 0.79 4.69 4.26 0.59 0.00 1.67 1.41 6.16 6.84 0.00 3.49 11.61 4.00 5.44 32.91 12.01 13.89 25 E4_Aa NovelBoundary 0 10.30 2.50 9.55 13.19 0.00 0.00 0.00 0.00 17.30 0.00 0.00 0.00 0.00 5.47 0.00 8.37 8.04 30.05 8.85 9.72 42.50 13.78 11.69 26 ER4a ExonRegion 0 24.52 18.85 73.00 103.44 7.75 35.05 4.36 32.07 49.31 8.24 0.57 1.68 4.56 29.41 44.54 8.56 12.56 45.83 47.75 41.84 411.16 151.56 124.13 27 E4_Da NovelBoundary 1 27.63 0.00 31.52 31.93 11.71 13.63 11.61 7.85 18.84 1.07 2.42 0.00 0.00 2.12 30.90 0.00 4.68 15.42 8.94 20.20 57.14 24.86 41.15 28 E4a_E5a KnownJunction 0 15.71 9.41 76.40 97.12 7.98 34.07 2.25 27.52 55.06 11.74 2.63 0.00 6.82 22.19 55.63 0.00 0.00 41.70 19.58 23.14 394.26 140.41 112.59 29 I4 Intron 0 15.80 7.59 26.41 30.63 5.41 19.96 3.09 8.41 10.88 2.13 1.50 1.11 0.00 11.82 19.16 6.47 4.11 21.57 15.35 15.22 43.17 22.36 35.16 30 I4_AR1 ActiveIntronRegion 0 6.18 5.88 10.60 13.30 3.93 16.58 3.40 3.78 4.73 0.63 0.71 1.31 0.00 10.96 8.98 6.48 1.21 15.37 9.35 7.65 30.58 15.83 19.99 31 I4_SR1 SilentIntronRegion 0 16.37 9.01 32.91 36.73 5.39 21.75 3.70 6.59 12.60 2.66 1.71 0.00 0.00 9.42 23.03 6.21 4.55 14.97 10.48 12.98 41.76 14.87 39.74 32 I4_AR2 ActiveIntronRegion 0 28.04 8.89 42.47 49.05 7.43 23.36 2.29 15.84 17.73 3.71 2.40 1.68 0.00 14.92 29.76 6.77 7.58 34.78 26.93 26.85 61.15 36.65 51.96 33 E5_Aa NovelBoundary 0 37.04 17.83 112.24 120.73 19.10 55.93 1.81 11.50 47.57 1.18 2.42 12.60 0.00 9.36 28.43 3.16 7.95 71.88 22.78 25.63 110.09 57.19 78.96 34 ER5a ExonRegion 0 41.23 21.63 117.07 101.29 11.65 59.06 4.99 33.90 48.85 12.19 3.93 1.67 11.19 27.32 43.43 8.61 13.31 54.30 30.43 43.79 408.51 164.36 135.30 35 E5_Da NovelBoundary 0 10.00 2.76 27.73 52.04 8.66 31.52 0.00 4.89 20.08 0.00 0.00 0.00 0.00 10.24 8.90 8.20 0.00 21.97 4.71 11.25 40.59 14.57 20.74 36 E5a_E6a KnownJunction 0 58.75 20.79 99.02 108.64 24.87 27.60 6.18 48.06 31.83 5.00 2.68 0.00 25.49 9.77 26.70 12.22 8.32 69.48 18.07 34.83 331.74 122.47 91.00 37 I5 Intron 0 4.69 4.51 6.48 9.01 0.00 9.76 1.76 0.00 7.35 0.00 0.00 0.00 0.00 3.56 9.08 0.00 0.00 8.15 4.24 2.83 10.75 5.54 16.93 38 I5_AR1 ActiveIntronRegion 0 4.78 4.59 6.59 9.17 0.00 9.90 1.79 0.00 7.48 0.00 0.00 0.00 0.00 3.62 9.24 0.00 0.00 8.29 4.31 2.88 10.94 5.64 17.23 39 E6_Aa NovelBoundary 0 32.30 14.87 28.09 30.87 4.33 23.79 2.16 12.86 26.74 1.64 2.63 0.00 0.00 2.47 10.63 3.67 0.00 33.41 4.71 8.63 37.50 11.45 30.56 40 ER6a ExonRegion 0 48.58 16.86 89.05 80.60 10.94 47.11 5.45 25.36 43.49 3.67 1.72 3.24 11.00 24.06 42.78 8.05 8.68 48.45 27.79 32.67 292.03 118.61 86.81 41 E6_Da KnownBoundary 0 10.08 6.71 18.39 16.28 0.00 15.05 0.00 5.83 7.52 0.00 0.00 0.00 0.00 11.65 17.80 0.00 0.00 28.27 0.00 0.00 32.31 8.76 7.85 42 E6a_E6b KnownJunction 0 75.57 5.72 85.92 90.83 12.56 48.84 2.12 25.22 24.28 1.26 0.00 6.30 19.80 14.60 17.80 4.36 0.00 54.22 0.00 5.62 200.34 80.15 62.91 43 ER6b ExonRegion 0 8.05 1.05 14.78 7.29 0.29 5.90 1.35 2.10 4.78 0.16 0.00 0.04 0.19 6.34 3.45 0.06 0.03 14.42 1.89 1.29 26.25 5.90 11.92 44 E6_Ab KnownBoundary 0 3.41 0.00 19.19 4.89 0.00 4.94 0.00 4.15 11.40 1.16 0.00 0.00 0.00 7.24 4.45 0.00 0.00 12.44 0.00 2.56 18.35 0.00 12.29 45 ER6c ExonRegion 0 48.02 20.02 126.80 124.58 10.19 52.81 5.64 35.39 57.29 9.70 2.38 5.13 14.36 26.94 42.90 6.71 7.60 96.26 31.09 34.87 310.03 116.77 128.13 46 E6_Db KnownBoundary 0 0.00 0.00 13.25 5.19 0.00 2.90 0.00 2.55 8.16 1.34 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 4.33 0.00 5.62 0.00 3.16 47 E6b_E6c KnownJunction 0 30.82 21.90 126.93 94.89 7.64 32.94 6.01 21.60 55.24 12.36 5.16 0.00 13.64 19.48 31.15 3.76 17.39 79.92 21.37 49.15 336.75 72.99 81.86 48 ER6d ExonRegion 0 4.43 0.19 6.76 5.30 0.82 2.41 0.05 1.86 6.02 1.92 0.05 0.08 1.91 1.05 4.89 1.82 0.15 2.58 0.86 0.49 9.88 4.94 6.82 49 E6_Ac KnownBoundary 0 2.82 0.00 12.92 8.52 4.33 5.79 0.00 4.31 9.66 0.00 0.00 0.00 0.00 2.47 4.82 3.50 0.00 13.68 0.00 0.00 8.71 2.82 15.11 50 ER6e ExonRegion 0 27.23 7.97 108.82 101.84 10.54 32.50 3.24 30.27 51.81 8.63 3.96 3.45 15.07 27.73 42.73 15.36 9.06 72.79 28.65 32.13 291.19 92.24 105.81 51 E6c_E7a KnownJunction 0 20.23 0.00 122.41 85.94 3.40 22.54 2.12 32.65 63.63 2.93 0.00 0.00 0.00 29.67 40.55 7.95 0.00 70.68 17.51 12.27 227.16 53.27 61.21 52 ER7a ExonRegion 0 23.42 3.91 41.16 40.62 2.68 20.71 0.85 15.17 26.18 3.74 3.51 0.00 6.65 18.33 25.73 8.94 5.55 36.55 11.56 15.33 172.05 37.50 63.41 53 E7a_E8a KnownJunction 0 15.56 2.76 12.42 15.48 3.82 5.00 0.00 8.30 32.03 1.34 2.42 0.00 0.00 19.95 23.86 0.00 8.13 27.82 4.80 8.50 159.14 26.70 78.36 54 ER8a ExonRegion 0 9.51 1.70 8.15 10.27 2.96 5.16 0.77 7.13 13.54 1.92 4.25 0.00 1.61 9.31 11.96 1.24 2.90 22.92 9.43 4.66 122.40 17.25 40.29 55 E8_Da NovelBoundary 0 0.00 3.29 5.50 6.76 4.33 2.33 0.00 0.00 3.79 0.00 0.00 0.00 0.00 9.71 0.00 0.00 0.00 6.84 0.00 9.65 8.28 7.96 8.02 56 E8a_E9a KnownJunction 0 16.97 0.00 5.80 9.09 4.16 0.00 2.25 10.72 6.60 4.35 5.37 0.00 0.00 4.77 13.35 0.00 0.00 15.79 9.60 0.00 119.42 19.72 39.52 57 E9_Aa NovelBoundary 0 6.74 5.66 6.15 6.43 0.00 10.79 0.00 0.00 11.69 0.00 0.00 0.00 0.00 2.35 0.00 0.00 0.00 15.13 13.74 5.94 20.32 8.63 4.35 58 ER9a ExonRegion 0 19.57 8.62 20.62 15.38 1.85 9.52 1.48 9.74 13.90 3.63 2.16 0.17 2.23 7.94 16.53 3.42 2.57 17.99 9.83 13.15 158.04 37.40 38.39 59 E9a_E10a KnownJunction 0 36.23 18.22 57.15 56.94 4.16 24.70 1.72 15.77 51.76 7.15 2.53 0.00 12.66 14.19 42.65 20.59 0.00 37.93 9.51 33.36 227.59 69.26 73.50 60 ER10a ExonRegion 0 9.98 20.65 66.23 69.24 6.57 46.58 1.91 22.43 37.26 7.78 3.34 4.44 1.46 14.17 40.96 12.78 8.10 48.69 25.11 43.91 279.36 73.38 98.24 61 E10a_E11a KnownJunction 0 9.85 19.08 75.40 115.97 15.37 62.52 2.21 40.79 44.27 6.26 7.48 0.00 0.00 19.31 47.96 11.19 0.00 71.71 49.13 40.14 282.20 101.53 83.91 62 E11_Aa NovelBoundary 0 6.52 0.00 9.05 22.54 8.06 7.95 0.00 2.26 4.98 2.31 7.16 0.00 6.66 14.95 10.14 0.00 4.49 10.28 4.24 17.83 4.94 7.78 15.79 63 ER11a ExonRegion 0 13.06 12.28 111.76 128.44 8.72 36.49 2.45 39.87 59.18 7.85 2.03 4.07 11.52 13.91 43.49 14.71 8.99 88.58 38.89 47.46 328.48 104.01 118.37 64 E11a_E12a KnownJunction 0 25.12 21.38 152.30 149.60 11.04 34.58 0.00 29.90 78.70 10.02 2.47 0.00 6.66 15.19 48.09 27.09 9.26 93.81 63.44 68.71 305.55 168.58 199.07 65 ER12a ExonRegion 0 30.02 16.43 74.67 91.45 6.12 37.53 1.89 22.57 46.21 4.71 2.65 3.07 5.83 14.85 31.62 10.96 10.88 49.02 36.55 37.38 207.03 84.52 107.22 66 ER12b ExonRegion 0 2.41 4.99 2.17 8.92 2.55 14.00 0.30 0.00 1.63 0.00 0.00 0.00 0.00 0.37 0.00 0.00 0.00 1.26 8.69 2.03 3.11 0.85 0.53 67 IG17 Intergenic 0 3.69 9.97 14.47 30.86 1.25 10.64 0.32 2.13 14.04 0.24 0.30 0.18 0.00 0.33 0.44 0.21 0.23 10.99 3.74 11.57 2.93 1.65 3.75 68 IG17_AR1 ActiveIntergenicRegion 0 8.10 21.61 33.47 70.32 3.05 23.99 0.81 4.42 32.45 0.46 0.00 0.33 0.00 0.41 0.71 0.28 0.46 25.49 8.21 24.63 2.68 2.34 3.77 69 IG17_AR2 ActiveIntergenicRegion 0 8.47 41.27 36.98 98.37 6.22 33.12 0.00 9.20 37.85 0.64 0.00 0.00 0.00 1.43 0.60 0.00 0.00 26.19 13.30 41.74 3.05 4.60 8.21