Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ACOX3 Gene 0 22.25 11.19 35.64 21.28 14.16 49.53 20.64 29.96 51.54 43.34 62.99 23.60 19.06 61.70 64.85 66.50 44.55 43.22 40.22 39.37 69.20 30.86 50.79 2 413009 Transcript 0 12.45 5.61 11.00 12.53 6.81 24.33 9.19 19.65 22.83 17.72 8.50 9.62 6.67 8.55 16.70 11.21 3.83 9.18 10.97 13.08 15.99 17.20 11.19 3 356406 Transcript 0 19.81 9.68 21.56 15.42 8.62 35.52 9.29 9.76 29.74 24.57 37.39 17.33 10.72 53.28 73.12 47.70 39.39 25.61 30.69 37.91 34.02 13.95 39.37 4 ER1a ExonRegion 0 8.04 0.81 0.00 0.00 2.85 3.91 0.62 2.07 0.00 0.61 3.22 0.00 0.00 7.58 1.55 1.98 1.10 0.49 0.00 4.40 4.85 1.53 5.68 5 ER1b ExonRegion 0 32.12 6.33 3.31 2.99 14.99 51.58 38.96 4.88 1.49 5.10 27.64 0.00 0.07 40.81 29.61 42.65 13.20 4.46 11.33 20.67 19.24 5.99 21.72 6 E1a_E2a KnownJunction 0 7.56 0.00 7.66 5.56 7.56 15.73 1.77 2.22 3.30 5.48 7.58 0.00 0.00 0.00 4.45 0.00 0.00 6.01 4.80 9.14 3.15 2.51 3.84 7 I1_AR4 ActiveIntronRegion 1 15.08 4.59 6.85 3.02 3.01 28.19 12.49 0.97 8.96 8.33 23.92 1.62 0.00 10.10 12.39 28.98 18.57 6.52 28.67 12.67 38.01 14.85 45.11 8 ER2a ExonRegion 1 8.17 2.93 15.88 7.70 2.18 9.17 2.18 13.35 26.93 23.45 68.09 1.48 9.50 51.18 43.21 58.90 43.08 40.22 37.34 34.42 68.04 24.26 54.42 9 E2a_E3a KnownJunction 1 14.00 3.35 29.80 16.08 8.23 17.66 3.89 21.60 53.65 41.69 137.46 6.30 13.64 99.71 65.27 182.26 46.84 108.94 99.77 52.48 80.93 39.37 143.50 10 ER3a ExonRegion 0 13.79 7.03 32.17 12.20 22.26 61.28 29.28 31.47 53.95 49.19 111.62 28.01 21.61 79.02 62.53 89.44 61.93 67.81 59.60 44.05 86.14 40.44 74.91 11 E3a_E4a KnownJunction 0 20.00 9.08 42.02 22.37 0.00 35.15 18.81 41.53 66.81 70.65 156.99 40.66 47.24 88.06 76.52 71.86 75.18 26.70 45.27 57.46 87.17 56.03 69.49 12 ER4a ExonRegion 0 17.81 17.08 44.24 14.86 22.23 40.83 29.89 33.69 73.43 64.50 129.50 51.72 40.08 96.52 67.81 84.57 66.15 49.05 70.67 37.19 111.16 53.39 73.10 13 E4a_E5a KnownJunction 0 37.49 12.56 52.51 17.21 34.72 54.12 47.03 29.61 77.75 74.84 160.72 89.13 33.76 92.24 69.72 102.20 55.07 85.52 127.06 64.75 90.81 43.60 78.36 14 E5_Aa NovelBoundary 0 0.00 0.00 1.77 3.63 0.00 0.00 0.00 3.86 4.92 4.08 0.00 0.00 0.00 2.47 0.00 4.36 0.00 0.00 18.26 0.00 0.00 0.00 3.67 15 ER5a ExonRegion 0 35.16 22.10 40.18 23.05 21.50 59.72 32.76 33.24 80.38 70.37 125.94 58.16 41.79 90.32 74.05 116.31 68.48 72.80 83.56 61.35 98.55 56.56 82.23 16 E5_Da NovelBoundary 0 3.78 3.22 3.52 1.66 0.00 0.00 9.80 1.77 1.79 5.26 0.00 0.00 0.00 0.00 10.51 4.19 0.00 8.12 18.17 0.00 2.90 6.00 15.54 17 E5a_E6a KnownJunction 0 27.93 12.23 27.23 18.61 38.79 86.31 18.99 28.22 69.99 55.47 95.18 30.61 20.62 79.70 57.11 105.70 56.66 56.50 47.72 45.51 105.82 58.29 66.16 18 ER6a ExonRegion 0 13.35 6.11 26.19 17.23 13.86 35.54 23.82 29.83 53.90 55.00 73.06 35.03 29.44 70.21 54.88 83.18 50.87 46.33 48.82 48.60 82.09 41.02 46.95 19 E6a_E7a KnownJunction 0 24.15 6.31 24.84 20.81 27.59 42.19 17.84 19.92 56.60 56.46 64.38 22.66 12.50 88.53 69.47 102.37 64.89 46.26 58.26 64.11 84.82 46.54 55.32 20 ER7a ExonRegion 0 12.03 12.13 33.43 20.46 21.35 29.30 32.28 31.58 56.07 52.05 83.07 39.89 23.77 82.08 70.41 87.19 71.66 51.07 37.19 48.58 79.23 35.12 54.44 21 E7a_E8a KnownJunction 0 16.52 15.59 50.74 29.13 34.30 23.23 20.40 32.45 62.96 59.79 88.55 24.31 32.95 89.94 63.54 98.52 50.12 70.18 33.98 32.15 97.98 46.29 71.28 22 ER8a ExonRegion 0 18.59 13.52 38.91 21.50 21.16 47.58 19.60 35.98 55.29 44.62 63.85 17.32 11.99 80.94 76.21 116.77 51.83 68.56 47.48 47.84 67.09 41.93 68.48 23 E8a_E9a KnownJunction 0 20.15 20.65 41.45 17.05 10.19 57.41 7.95 37.58 53.62 45.40 48.28 18.91 6.82 71.75 57.48 95.19 44.60 31.79 37.93 60.53 42.44 19.96 60.18 24 ER9a ExonRegion 0 12.11 5.85 42.17 15.80 11.92 41.78 24.97 27.32 50.25 44.51 52.37 17.86 10.15 73.31 70.60 63.16 52.80 42.74 36.45 42.79 56.91 29.81 63.39 25 E9a_E10a KnownJunction 0 14.30 5.53 25.10 19.58 26.49 69.51 26.98 35.78 76.85 54.88 82.02 56.72 33.11 67.51 90.36 85.96 38.15 42.03 60.43 41.93 54.61 23.51 43.11 26 I9_AR1 ActiveIntronRegion 0 3.87 0.50 13.33 3.02 0.00 6.71 2.33 4.38 3.80 0.84 3.82 2.22 0.00 1.07 2.90 0.00 3.46 2.16 1.01 12.45 6.66 0.20 1.50 27 ER10a ExonRegion 0 23.21 4.83 48.19 21.56 9.57 51.03 19.46 29.75 44.98 38.78 71.08 26.50 19.33 80.14 71.19 74.86 65.11 44.66 35.35 48.85 64.27 21.24 52.24 28 E10a_E11a KnownJunction 0 20.30 5.33 48.70 21.61 4.33 12.15 15.50 24.03 61.83 41.23 78.97 19.21 6.33 86.47 91.97 42.21 76.76 69.48 35.95 56.12 72.90 28.11 70.17 29 ER11a ExonRegion 0 12.24 5.50 46.67 16.66 10.73 35.99 15.72 26.20 53.02 37.60 66.84 20.36 9.23 62.70 63.16 56.08 49.54 46.07 27.62 54.90 91.48 25.50 64.34 30 E11_Da NovelBoundary 0 0.00 0.00 18.80 2.06 0.00 0.00 7.51 0.00 4.83 4.27 0.00 0.00 0.00 0.00 0.00 4.19 0.00 2.07 3.76 0.00 0.00 0.00 0.00 31 E11a_E12a KnownJunction 0 17.26 5.99 46.86 18.81 0.00 78.88 18.46 36.43 72.05 38.14 70.33 17.41 18.99 111.96 67.74 72.46 80.79 42.32 36.61 39.56 113.92 33.92 60.27 32 ER12a ExonRegion 1 22.52 9.57 42.07 22.50 16.05 52.06 23.69 30.21 56.14 43.87 83.15 10.67 19.71 81.43 76.75 75.49 61.97 64.00 47.31 49.89 110.54 30.91 65.35 33 E12_Da NovelBoundary 0 0.00 0.00 3.13 0.00 4.33 2.90 3.36 1.73 15.89 2.93 0.00 0.00 0.00 0.00 0.00 0.00 4.21 2.28 4.80 5.75 2.47 0.00 0.00 34 E12a_E13a KnownJunction 0 31.49 2.63 56.50 12.75 4.33 51.67 20.71 23.17 52.81 44.86 79.02 24.91 33.28 84.17 82.33 59.73 53.76 57.21 22.31 59.06 102.37 44.64 43.19 35 E13_Aa NovelBoundary 0 0.00 3.35 4.11 9.72 0.00 0.00 1.81 7.27 14.50 6.02 4.74 0.00 19.15 2.47 0.00 4.02 4.39 0.00 4.80 5.50 0.00 0.00 3.41 36 ER13a ExonRegion 0 13.65 4.46 45.61 11.29 11.38 45.44 15.39 21.33 43.28 29.21 83.06 37.71 28.39 78.37 70.70 55.92 56.55 43.52 23.33 35.22 97.64 33.14 60.46 37 E13_Da NovelBoundary 0 0.00 6.25 12.33 22.91 7.22 15.22 8.66 16.22 29.31 24.69 11.74 7.35 0.00 18.60 30.41 24.61 13.46 30.97 28.61 21.35 8.59 5.39 17.67 38 E13a_E14a KnownJunction 0 19.48 0.00 40.57 8.66 0.00 21.52 16.34 13.10 24.77 28.02 48.80 27.61 34.09 41.14 78.99 42.89 47.03 23.79 8.28 5.94 51.03 35.45 43.19 39 I13 Intron 0 5.09 5.94 12.12 13.91 5.64 23.66 6.87 15.79 27.34 15.31 10.83 5.93 6.16 12.82 13.11 13.72 7.46 16.65 20.23 23.79 19.60 6.23 15.57 40 I13_SR1 SilentIntronRegion 0 4.44 3.59 10.31 12.09 4.45 19.42 7.21 15.07 25.88 16.71 11.96 6.11 5.51 15.06 13.68 14.76 8.97 17.18 21.21 24.30 20.82 5.97 15.72 41 I13_AR1 ActiveIntronRegion 0 5.09 9.53 12.40 14.16 8.58 30.39 8.95 15.18 28.55 17.44 13.41 16.11 9.05 11.55 13.36 13.58 8.82 18.37 17.07 28.54 21.05 5.54 14.88 42 I13_SR2 SilentIntronRegion 0 5.39 7.39 13.88 16.08 6.33 27.13 6.31 17.18 29.58 14.46 9.93 4.28 6.30 11.60 12.90 13.36 5.93 16.10 20.70 23.28 18.81 6.63 16.15 43 I13_AR2 ActiveIntronRegion 0 10.58 4.07 22.06 16.16 5.35 8.65 8.70 14.07 19.76 12.45 3.04 0.00 0.00 8.12 9.53 14.86 6.13 43.03 6.83 27.05 5.67 11.31 6.29 44 I13_AR3 ActiveIntronRegion 0 10.63 3.85 12.01 10.22 2.33 14.35 11.20 12.32 17.99 10.97 5.50 0.00 19.68 11.47 15.45 7.17 9.26 29.72 16.27 26.73 13.94 11.82 8.43 45 E14_Aa NovelBoundary 0 12.45 15.72 24.95 31.66 0.00 30.55 12.54 32.16 34.17 25.81 11.37 7.65 0.00 9.06 9.15 29.91 4.77 15.09 8.09 34.90 13.84 8.57 26.72 46 ER14a ExonRegion 0 43.17 10.76 43.53 21.43 17.67 90.17 18.09 30.20 45.48 47.15 73.88 18.92 25.84 87.62 93.17 88.88 65.39 50.54 28.28 34.89 93.11 38.24 40.13 47 E14a_E15a KnownJunction 0 44.38 25.32 48.93 31.36 14.35 85.01 7.86 42.88 64.44 66.70 53.17 5.70 7.79 85.53 94.81 65.79 38.62 48.09 40.85 37.20 126.83 52.54 60.01 48 ER15a ExonRegion 0 16.06 9.61 40.27 24.63 10.41 60.10 12.74 27.37 42.76 44.67 40.44 18.28 14.85 53.87 76.00 58.95 41.35 31.25 25.57 34.88 72.45 27.06 43.80 49 E15a_E16a KnownJunction 0 17.86 12.30 23.21 10.16 12.56 24.53 11.97 9.57 20.51 27.64 23.58 13.65 20.29 66.46 73.18 54.52 54.89 44.89 17.13 29.27 22.36 13.78 38.07 50 E15a_E17a KnownJunction 0 6.96 0.00 13.72 7.29 4.33 25.33 7.60 20.21 12.18 11.01 2.47 5.70 0.00 2.47 21.14 8.72 0.00 8.66 4.24 9.01 14.46 23.70 7.00 51 E16_Aa NovelBoundary 0 0.00 0.00 5.71 1.96 0.00 0.00 5.92 17.21 8.48 2.15 0.00 0.00 6.82 12.01 16.32 12.22 4.77 1.70 4.52 9.20 3.09 2.76 7.77 52 ER16a ExonRegion 0 21.35 10.29 20.06 16.15 8.97 26.21 10.42 10.40 26.55 25.01 37.63 13.43 11.86 47.70 70.14 50.13 41.60 18.48 37.19 41.05 41.16 12.29 36.41 53 E16_Da NovelBoundary 0 3.56 0.00 13.81 3.60 0.00 0.00 1.81 4.93 15.77 9.67 9.16 6.30 8.28 9.42 16.19 4.10 3.55 2.11 8.47 0.00 17.67 0.00 0.00 54 E16a_E17a KnownJunction 0 20.23 6.45 21.41 19.94 4.33 55.82 5.48 9.32 42.16 21.06 50.96 24.91 0.00 45.68 76.02 38.45 21.69 13.47 37.74 43.40 38.55 15.80 43.62 55 ER17a ExonRegion 0 31.85 12.58 40.54 18.03 10.43 73.16 18.17 25.73 52.33 37.10 40.48 32.10 19.62 66.64 86.54 75.33 42.00 44.26 22.96 31.21 43.87 23.61 45.33 56 E17a_E18a KnownJunction 0 37.41 17.30 39.00 32.63 7.81 66.50 7.91 30.11 52.31 47.60 40.91 31.21 0.00 89.53 65.39 86.47 53.30 53.97 26.17 31.77 31.32 38.15 42.77 57 ER18a ExonRegion 0 42.25 20.38 54.21 35.98 15.19 67.27 21.17 41.30 65.24 50.83 56.98 21.62 16.79 60.97 95.12 72.88 34.21 48.00 54.12 39.12 75.37 28.89 51.38 58 E18_Da KnownBoundary 1 72.98 15.92 31.93 54.17 26.99 85.92 36.21 53.60 90.65 61.92 39.38 37.81 6.66 43.62 71.70 104.16 12.81 36.89 103.34 51.71 57.89 55.60 43.28 59 ER18b ExonRegion 0 22.34 16.03 19.29 30.29 13.24 43.76 19.36 36.67 56.30 41.54 19.80 23.17 20.00 15.61 27.42 22.94 10.40 18.38 28.66 25.83 28.67 26.39 20.89 60 IG1_SR3 SilentIntergenicRegion 0 3.24 5.67 4.45 4.35 3.23 20.00 5.40 9.98 19.78 9.93 0.41 6.16 9.46 3.85 4.65 5.03 1.40 11.35 6.23 12.09 11.94 4.10 9.94 61 IG1_AR3 ActiveIntergenicRegion 0 2.73 6.24 9.02 12.83 4.06 21.75 9.91 12.41 30.77 9.46 0.57 8.32 4.84 5.33 6.25 9.20 3.89 17.40 13.51 11.97 18.96 9.12 13.01 62 IG1_SR2 SilentIntergenicRegion 0 2.22 2.99 3.52 3.10 1.52 12.54 4.83 4.24 17.16 7.07 0.54 3.81 2.06 1.97 1.68 3.18 2.49 9.45 3.56 7.87 11.86 5.93 8.85 63 IG1_AR2 ActiveIntergenicRegion 0 6.35 12.20 37.11 14.86 13.76 57.55 11.60 23.70 53.46 31.84 0.00 0.41 0.00 0.85 0.83 5.94 3.30 9.94 12.59 8.00 22.14 18.16 7.97 64 IG1_AR1 ActiveIntergenicRegion 0 13.72 20.20 28.86 51.35 20.00 65.71 21.29 34.97 45.27 27.50 0.95 3.41 1.74 1.51 4.25 2.95 0.69 6.92 5.10 9.89 9.85 9.77 6.92