Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CRMP1 Gene 0 189.81 1405.54 1176.76 1024.84 398.22 1521.50 670.94 1291.07 1138.30 1532.26 11.16 0.40 0.58 0.07 0.00 0.00 0.00 2063.89 1297.10 1698.29 71.98 64.09 39.26 2 324989 Transcript 0 2.45 57.91 97.95 37.79 17.88 148.28 69.81 88.05 80.97 149.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 295.60 223.03 247.37 0.00 0.12 0.00 3 397890 Transcript 0 15.48 118.17 94.85 117.88 41.31 197.02 93.81 206.19 212.33 310.94 1.29 0.00 0.87 0.00 0.00 0.00 0.00 636.20 331.84 431.08 15.99 20.52 7.19 4 ER1a ExonRegion 0 1.49 20.90 44.25 9.53 4.78 61.57 20.43 38.79 32.86 67.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 139.40 132.36 130.81 0.00 0.23 0.00 5 E1a_E3a KnownJunction 0 3.41 94.92 151.65 66.06 30.98 234.98 119.20 137.31 129.08 230.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 451.80 313.70 363.94 0.00 0.00 0.00 6 ER2a ExonRegion 0 3.98 54.86 38.33 44.78 20.91 116.91 41.93 92.27 102.47 179.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 316.45 249.99 227.28 1.95 7.25 2.19 7 E2a_E3a KnownJunction 0 39.04 287.12 241.39 305.29 99.75 466.61 237.15 523.12 532.52 751.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1588.45 742.33 1063.13 11.37 48.86 3.24 8 ER3a ExonRegion 0 44.33 354.71 519.03 370.74 179.18 983.29 380.51 748.83 726.96 1110.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1871.36 1007.15 1508.74 4.38 33.59 7.95 9 E3a_E4a KnownJunction 0 72.38 500.37 643.27 485.32 301.27 1540.82 552.70 885.02 898.66 1376.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1607.69 1110.81 1764.69 8.46 32.51 0.00 10 ER4a ExonRegion 0 58.14 615.43 712.27 579.04 179.77 1262.68 539.42 967.59 1042.03 1521.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2234.79 1355.45 1969.87 3.65 42.92 6.24 11 E4a_E5a KnownJunction 0 63.12 688.89 756.74 726.45 237.18 1338.43 558.70 1019.75 1259.16 1571.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2636.23 1513.83 2191.27 2.78 35.58 7.85 12 ER5a ExonRegion 0 73.63 896.71 898.29 767.81 313.58 1580.11 676.71 1167.95 1244.34 1704.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2977.76 1592.10 2315.25 3.01 43.17 11.53 13 E5a_E6a KnownJunction 0 85.05 886.42 1101.91 947.57 321.31 1817.70 799.92 1478.34 1390.23 1884.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2577.57 1689.08 2565.70 6.30 53.95 4.35 14 ER6a ExonRegion 0 76.81 855.09 1038.28 868.11 340.29 1688.81 720.90 1426.36 1328.53 1885.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2222.87 1378.59 2291.79 5.22 59.75 2.32 15 E6a_E7a KnownJunction 0 100.91 1123.29 1182.25 936.84 387.95 1857.85 830.83 1482.07 1342.81 2022.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2497.90 1264.22 2359.63 0.00 47.58 4.10 16 ER7a ExonRegion 0 82.05 935.80 1110.72 858.90 450.98 2097.23 777.12 1431.50 1304.10 1991.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2603.89 1842.04 2367.05 7.37 46.22 8.27 17 E7a_E8a KnownJunction 0 161.88 916.68 1197.06 875.61 569.86 2258.30 864.53 1646.37 1413.41 2178.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2532.84 1692.19 2513.35 12.05 44.70 3.67 18 ER8a ExonRegion 0 98.83 787.67 949.34 686.16 272.11 1541.59 542.75 1291.21 1198.65 1770.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2430.01 1366.66 2003.51 5.97 44.48 7.24 19 E8a_E9a KnownJunction 0 58.38 832.22 861.68 712.33 207.56 1237.58 435.00 1200.47 1105.95 1587.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2802.50 1280.60 1882.36 0.00 42.74 12.72 20 ER9a ExonRegion 0 81.20 849.45 1008.29 776.98 212.64 1436.53 588.44 1291.93 1188.98 1761.30 0.00 0.00 0.00 0.48 0.00 0.00 0.00 2351.56 1462.37 1947.42 3.93 34.39 7.84 21 E9a_E10a KnownJunction 0 114.69 1028.24 869.69 635.35 233.53 1940.47 827.96 950.12 1013.65 1514.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1802.35 1139.42 1755.74 2.66 34.29 4.35 22 ER10a ExonRegion 0 86.45 829.88 852.42 544.42 249.70 1592.12 607.52 988.05 1050.44 1525.24 0.00 0.00 0.00 0.19 0.00 0.00 0.00 2731.29 1223.89 1719.32 0.55 29.65 8.83 23 E10a_E11a KnownJunction 0 111.28 790.91 760.50 532.17 193.46 1409.64 498.64 877.22 841.98 1174.67 0.00 0.00 0.00 2.12 0.00 0.00 0.00 1972.14 1041.72 1574.98 0.00 25.53 11.87 24 ER11a ExonRegion 0 112.53 884.18 890.17 736.14 214.34 1219.09 500.49 988.20 992.73 1499.55 0.00 0.00 0.00 0.21 0.00 0.00 0.00 1935.18 1000.72 1838.98 2.65 29.40 7.63 25 E11a_E12a KnownJunction 0 130.54 1085.79 1181.30 875.25 244.57 1651.09 625.56 1290.88 1232.54 1829.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1545.09 620.44 2094.95 3.03 27.19 3.93 26 ER12a ExonRegion 0 153.57 1602.40 1276.57 1095.84 357.78 1770.82 788.88 1439.55 1377.60 1912.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2066.10 1075.52 2363.54 6.02 37.02 10.41 27 E12a_E13a KnownJunction 0 40.23 1032.91 1425.79 1255.65 266.98 1815.55 613.86 1682.39 1499.96 2034.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1313.41 676.54 2425.66 5.56 27.74 3.16 28 E13_Aa NovelBoundary 0 10.30 94.79 120.43 70.15 24.96 41.57 19.25 106.14 117.19 90.42 6.84 0.00 0.00 0.00 0.00 0.00 0.00 42.66 18.35 122.66 39.48 61.78 26.12 29 ER13a ExonRegion 0 136.48 1346.68 1755.71 1501.55 338.87 1915.41 759.06 2054.01 1851.99 2489.66 2.18 0.00 0.00 0.00 0.00 0.00 0.00 3342.00 1927.29 2656.46 29.22 60.60 18.45 30 E13_Da NovelBoundary 0 23.41 11.84 33.65 18.38 0.00 37.82 13.60 2.30 9.64 7.76 12.16 0.00 0.00 0.00 0.00 0.00 0.00 22.30 23.62 27.23 74.94 42.92 61.03 31 E13a_E14a KnownJunction 0 242.78 2107.65 1832.64 1415.80 859.59 2759.21 1375.62 2192.98 1987.62 2625.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3389.81 1981.05 2348.19 5.87 60.68 19.89 32 Ix Intron 0 10.18 11.31 22.72 16.49 6.63 16.66 11.58 12.02 14.09 11.21 14.32 0.28 0.82 0.03 0.00 0.00 0.00 33.31 12.23 21.51 122.42 61.82 57.72 33 Ix_AR4 ActiveIntronRegion 0 11.11 4.46 11.85 8.48 3.59 10.54 7.86 8.20 5.99 2.81 4.35 0.00 0.00 0.00 0.00 0.00 0.00 11.13 6.60 17.38 67.12 41.12 30.66 34 Ix_SR2 SilentIntronRegion 0 18.88 8.79 35.48 21.14 7.76 16.27 15.35 13.01 16.73 11.42 25.16 0.00 0.00 0.00 0.00 0.00 0.00 41.89 14.40 29.54 122.85 66.16 65.47 35 Ix_AR3 ActiveIntronRegion 0 11.82 11.32 27.67 19.93 7.15 19.65 13.34 13.90 17.75 13.10 16.34 0.22 0.71 0.00 0.00 0.00 0.00 38.30 14.03 23.88 154.33 73.19 63.53 36 Ix_SR1 SilentIntronRegion 0 6.00 4.41 20.08 14.39 0.59 20.78 8.61 10.18 8.51 16.38 16.75 0.00 0.00 0.00 0.00 0.00 0.00 21.97 5.66 7.09 118.02 38.66 52.70 37 Ix_AR2 ActiveIntronRegion 0 6.14 11.14 16.75 13.12 6.47 16.06 8.61 10.08 11.70 12.22 8.71 0.59 0.29 0.10 0.00 0.00 0.00 32.55 10.09 17.08 92.67 47.73 48.27 38 Ix_AR1 ActiveIntronRegion 0 6.27 21.93 16.03 14.85 6.55 10.78 13.20 13.02 10.53 5.64 20.88 0.00 5.19 0.00 0.00 0.00 0.00 24.09 14.91 22.39 137.01 77.26 81.01 39 E14_Aa NovelBoundary 0 14.60 18.35 31.96 22.18 7.39 24.08 23.54 24.44 16.29 13.94 12.32 0.00 6.82 0.00 0.00 0.00 0.00 30.05 0.00 30.23 142.89 90.07 82.89 40 ER14a ExonRegion 0 344.50 2424.50 2007.84 1762.80 653.01 2565.80 1101.72 2433.10 2067.39 2844.74 13.74 0.00 3.56 0.00 0.00 0.00 0.00 4271.51 2471.29 2630.53 110.57 121.74 85.52 41 E14_Da NovelBoundary 0 9.93 11.71 40.15 28.10 4.33 63.09 15.59 17.83 16.20 23.21 9.63 0.00 0.00 0.00 0.00 0.00 0.00 30.39 12.61 36.18 86.86 41.82 36.79 42 E14a_E15a KnownJunction 0 480.16 2725.50 2023.79 1573.06 825.38 2619.57 1140.15 2394.86 1879.73 2534.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3826.89 2199.12 2277.37 13.59 44.03 12.04 43 Ix Intron 0 8.82 14.39 11.89 13.93 10.69 42.58 29.13 21.35 26.12 21.06 12.33 0.00 0.84 0.23 0.00 0.00 0.00 32.70 25.17 35.74 84.83 54.35 56.37 44 Ix_AR4 ActiveIntronRegion 0 10.22 8.32 2.79 1.60 3.82 27.16 15.73 8.50 12.65 9.53 5.93 0.00 2.00 0.00 0.00 0.00 0.00 31.44 7.01 32.48 74.16 42.03 30.97 45 Ix_SR2 SilentIntronRegion 0 7.78 7.74 18.00 13.47 7.98 35.07 19.64 20.46 26.51 21.57 10.77 0.00 1.17 0.33 0.00 0.00 0.00 30.35 26.52 41.46 93.30 64.43 59.18 46 Ix_AR3 ActiveIntronRegion 0 9.92 12.54 9.52 14.01 10.08 44.92 30.98 21.93 26.86 20.23 15.42 0.00 0.67 0.00 0.00 0.00 0.00 27.66 31.69 35.58 88.01 53.71 67.02 47 Ix_AR2 ActiveIntronRegion 0 10.07 7.03 6.87 14.08 15.73 37.95 25.72 15.19 17.14 20.61 12.01 0.00 0.00 0.00 0.00 0.00 0.00 29.84 16.51 39.72 117.06 50.70 51.61 48 Ix_AR1 ActiveIntronRegion 0 3.26 2.03 4.24 6.19 6.59 22.29 12.53 8.78 12.26 7.50 1.49 0.00 0.00 0.00 0.00 0.00 0.00 15.07 3.92 10.31 54.92 23.88 26.88 49 Ix_SR1 SilentIntronRegion 0 8.50 19.53 12.61 15.95 12.79 47.17 34.24 23.87 28.38 23.30 12.43 0.00 0.72 0.37 0.00 0.00 0.00 37.16 24.71 34.53 80.20 53.61 54.15 50 Ix Intron 0 22.35 23.60 35.14 28.37 15.62 46.25 31.64 23.09 21.48 22.21 16.11 0.50 0.27 0.19 0.00 0.00 0.00 31.72 25.01 32.38 100.25 47.49 51.02 51 Ix_SR1 SilentIntronRegion 0 24.25 27.64 22.35 25.56 20.44 50.67 35.54 21.42 21.08 23.23 11.72 0.40 0.43 0.00 0.00 0.00 0.00 16.31 25.40 29.40 45.02 44.71 41.57 52 Ix_AR1 ActiveIntronRegion 0 19.34 17.10 56.08 33.04 7.83 39.22 25.41 25.89 22.21 20.62 23.31 0.65 0.00 0.49 0.00 0.00 0.00 56.91 24.46 37.34 190.44 52.16 66.56 53 E15_Aa NovelBoundary 0 31.41 31.51 76.90 56.17 7.98 53.72 38.91 61.16 49.88 58.80 39.69 0.00 0.00 0.00 0.00 0.00 0.00 117.23 42.35 51.77 204.30 88.67 162.62 54 ER15a ExonRegion 0 440.41 2941.00 2146.97 1964.94 826.03 2460.17 1164.69 2124.88 1724.09 2152.14 34.05 1.30 1.29 0.13 0.00 0.00 0.00 2634.58 1881.01 2219.04 208.19 133.63 101.75 55 ER15b ExonRegion 0 3.41 12.54 4.83 3.56 3.27 7.54 2.35 3.17 1.99 2.29 3.87 0.00 2.61 0.00 0.00 0.00 0.00 3.70 3.19 2.84 34.65 5.44 16.15