Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC024937.1 Gene 0 35.87 52.02 135.19 102.04 54.89 55.68 24.64 65.27 63.28 120.91 18.34 34.84 20.13 24.15 17.76 25.19 16.86 25.30 22.34 38.73 2.77 5.07 5.48 2 429866 Transcript 0 34.57 48.53 120.23 89.24 62.04 53.48 28.11 61.88 54.15 114.42 23.92 32.78 33.20 31.38 17.10 26.32 20.03 30.49 27.47 49.18 3.92 5.33 5.31 3 442949 Transcript 0 13.13 20.49 52.82 48.40 19.44 13.02 10.11 24.13 24.34 52.66 7.79 1.30 2.62 1.34 1.38 3.45 3.69 18.77 12.55 19.79 1.44 1.46 0.00 4 ER1a ExonRegion 0 43.74 59.20 196.19 106.77 77.86 75.78 21.10 97.39 82.06 148.35 40.65 51.19 39.09 40.67 33.88 48.48 29.91 31.43 41.39 54.53 4.06 12.34 11.18 5 E1_Ab KnownBoundary 0 112.83 108.20 465.15 336.72 131.32 27.31 103.83 260.25 266.61 448.06 397.47 273.54 157.94 310.61 126.09 456.21 475.46 250.79 191.72 247.23 124.42 232.44 170.04 6 ER1b ExonRegion 0 56.18 89.97 247.03 183.20 91.06 100.13 38.39 108.96 110.73 187.37 21.40 56.72 22.17 27.02 25.36 35.33 20.06 25.16 27.50 54.65 2.36 8.82 6.16 7 E1_Da KnownBoundary 0 132.62 186.74 264.09 151.80 133.11 245.31 191.14 102.73 129.51 224.00 172.10 355.47 227.10 274.71 117.81 145.43 181.21 135.35 45.74 148.03 63.69 106.36 58.47 8 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 3.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 0.00 0.00 0.00 0.00 9 ER1c ExonRegion 0 26.82 53.97 146.83 97.31 45.02 61.41 30.75 57.00 66.43 124.02 5.49 27.57 14.33 17.68 12.93 21.71 13.04 35.43 12.06 33.92 2.34 1.14 2.65 10 E1_Ac KnownBoundary 1 131.43 217.79 343.13 226.41 218.59 104.66 199.39 184.22 185.27 319.31 285.97 177.96 55.52 122.26 53.53 205.93 172.04 211.16 129.23 156.66 153.70 211.13 164.67 11 ER1d ExonRegion 0 35.75 54.05 125.75 121.67 62.94 46.39 47.23 70.62 67.64 167.97 21.63 39.45 22.89 35.48 22.57 30.48 19.02 38.91 30.19 49.35 4.67 4.06 9.29 12 E1_Db KnownBoundary 0 41.34 30.59 64.31 51.08 77.59 37.59 30.60 28.46 26.19 81.42 12.69 12.15 22.56 27.72 15.82 0.00 3.65 34.16 12.33 41.67 5.87 3.12 4.10 13 E1b_E1d KnownJunction 0 53.42 66.37 252.92 230.27 72.75 40.83 49.02 106.71 117.91 256.83 30.43 0.00 15.75 2.88 5.93 16.66 4.11 96.59 50.26 64.05 8.65 8.76 0.00 14 E1_Ad KnownBoundary 0 15.63 24.67 116.97 123.39 34.04 22.88 23.14 90.81 69.96 126.63 18.64 24.76 12.82 22.31 0.00 18.88 8.60 31.88 19.20 39.18 0.00 3.00 0.00 15 ER1e ExonRegion 0 57.85 75.24 194.02 183.54 136.46 79.46 71.49 114.65 94.69 233.20 45.10 43.29 60.97 61.72 25.14 31.70 27.51 64.67 52.03 100.71 6.61 10.42 11.75 16 ER1f ExonRegion 0 58.48 64.21 149.65 167.30 77.71 61.34 33.03 101.04 94.27 209.29 37.33 52.52 37.71 45.95 24.28 33.28 27.90 56.57 42.06 65.92 5.42 5.31 10.86 17 E1_Dc KnownBoundary 0 15.93 5.85 26.61 38.42 37.78 35.09 5.74 23.74 8.25 35.14 13.85 5.55 6.17 4.53 0.00 15.04 8.98 16.13 3.48 43.72 2.78 0.00 0.00 18 E1c_E1e KnownJunction 0 13.78 41.57 62.74 59.67 28.18 27.26 10.73 37.01 26.56 57.83 12.42 0.00 0.00 2.88 0.00 4.02 17.39 12.85 17.98 38.99 0.00 0.00 0.00 19 E1_Ae KnownBoundary 0 18.74 11.31 18.42 26.00 27.16 15.39 6.67 10.97 11.43 20.87 12.11 6.00 26.95 14.19 0.00 7.01 29.36 1.70 8.28 14.32 4.70 2.33 0.00 20 ER1g ExonRegion 0 44.45 54.23 64.13 58.60 50.84 50.74 17.21 40.33 27.58 66.52 28.35 41.85 51.59 36.81 13.54 29.72 29.71 20.94 31.85 56.74 6.61 2.78 0.98 21 ER1h ExonRegion 0 32.62 38.16 32.27 30.49 30.38 34.66 11.14 19.86 16.03 31.53 16.52 24.28 34.49 30.64 15.19 20.63 21.29 13.15 22.30 42.34 4.19 1.76 2.88 22 E1_Dd NovelBoundary 0 3.78 9.93 34.21 42.25 21.48 19.59 4.42 39.64 18.95 35.48 8.00 6.15 0.00 10.12 0.00 4.36 9.35 10.03 9.22 6.46 3.15 0.00 0.00 23 E1d_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E1_De NovelBoundary 0 21.56 18.81 24.81 49.28 36.84 8.57 8.57 18.44 13.51 43.87 4.95 0.00 0.00 2.77 0.00 8.03 0.00 11.90 13.65 22.18 0.00 0.00 8.11 25 E1e_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER1i ExonRegion 0 8.04 7.73 0.98 0.00 7.49 8.07 0.00 1.04 1.24 0.92 3.87 7.79 0.00 2.27 2.32 0.00 0.66 2.59 3.19 14.47 0.00 0.00 0.00 27 I1 Intron 0 14.00 17.79 40.52 46.81 31.97 18.78 12.71 23.63 18.46 40.48 11.14 28.80 27.20 18.02 9.03 12.05 9.86 14.91 14.27 29.97 4.23 2.22 1.88 28 I1_AR1 ActiveIntronRegion 0 13.70 19.16 43.83 50.59 33.45 18.63 13.70 25.63 20.16 43.54 12.02 29.34 28.49 19.12 9.18 11.76 10.37 16.07 13.50 31.63 4.65 1.97 1.81 29 I1_SR1 SilentIntronRegion 0 21.52 9.83 21.24 32.71 36.57 25.67 7.94 8.64 8.65 27.33 7.41 51.95 32.83 14.62 17.89 20.31 7.70 8.01 30.79 26.95 2.20 6.25 2.94 30 E2_Ab NovelBoundary 1 87.94 88.14 122.32 66.16 168.93 149.46 247.89 111.27 67.91 171.62 241.32 230.63 155.02 191.89 78.50 118.00 263.67 51.90 45.55 132.56 42.63 130.55 70.94 31 I1_AR2 ActiveIntronRegion 0 16.68 5.50 10.45 9.46 15.58 20.50 3.35 6.51 2.69 11.20 2.50 17.32 11.86 7.55 5.12 14.16 5.44 4.57 19.86 13.64 0.13 4.29 2.59 32 ER2a ExonRegion 0 3.53 7.29 0.31 0.45 4.91 1.99 0.88 0.00 0.31 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 1.24 0.00 0.00 0.00 33 ER2b ExonRegion 0 7.89 7.12 3.04 2.38 3.36 3.54 1.06 0.85 0.00 3.96 0.64 1.18 0.00 1.64 0.00 0.00 2.72 2.73 1.05 1.40 0.73 0.00 0.00 34 IG49_AR3 ActiveIntergenicRegion 0 6.81 32.56 19.82 11.76 37.45 10.08 15.12 11.81 8.88 36.14 3.66 21.57 16.03 6.93 4.16 5.27 2.44 0.59 9.57 12.02 0.00 2.36 0.03 35 IG49_SR2 SilentIntergenicRegion 0 23.99 59.28 31.18 19.91 40.48 23.02 19.34 21.03 14.11 47.41 9.09 11.30 24.84 16.81 13.00 13.43 1.96 8.59 10.20 32.39 0.00 8.14 2.61 36 IG49_AR4 ActiveIntergenicRegion 0 0.50 16.28 20.26 13.43 12.08 6.20 10.15 15.63 10.22 26.65 5.82 2.13 6.35 10.15 4.31 6.64 6.47 10.05 5.93 11.30 1.23 1.94 1.64 37 IG49_SR9 SilentIntergenicRegion 0 2.73 3.52 11.36 8.89 6.78 3.17 4.88 6.61 4.85 15.24 2.25 4.34 4.05 6.90 5.75 8.54 4.14 6.66 7.47 10.70 1.60 1.05 1.49