Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SDHALP2 Gene 0 45.15 51.05 67.43 37.98 41.83 43.02 48.80 48.11 52.73 81.96 43.94 46.67 34.22 59.47 40.14 52.97 48.04 67.31 27.84 79.56 21.44 28.70 31.12 2 457233 Transcript 0 27.15 20.65 24.11 10.06 15.05 6.83 16.85 8.10 5.39 9.99 9.48 6.89 4.46 3.75 6.15 12.55 7.98 6.55 3.83 11.41 2.89 4.72 4.30 3 452844 Transcript 0 0.41 0.63 2.90 2.81 1.01 0.00 3.78 0.45 3.25 2.32 3.49 7.64 4.29 4.41 1.52 9.74 6.35 2.98 0.00 3.18 1.19 5.78 3.69 4 429897 Transcript 0 21.35 6.82 16.41 0.40 23.03 16.53 12.06 7.90 20.20 47.95 29.82 23.70 11.67 19.70 6.69 18.77 19.30 2.45 0.83 35.90 0.41 8.39 24.37 5 453324 Transcript 0 12.82 11.13 31.00 6.37 8.41 9.21 12.95 22.38 9.16 23.20 13.47 9.07 6.53 12.75 16.04 16.80 11.43 11.86 6.63 10.55 2.93 14.69 5.80 6 445430 Transcript 0 68.13 89.54 85.89 50.53 72.60 72.09 79.68 69.37 76.67 99.92 52.66 83.04 58.24 86.85 60.20 73.25 62.95 97.53 43.98 111.58 27.48 38.30 42.39 7 425425 Transcript 0 0.11 0.00 1.16 2.01 0.00 4.63 3.24 0.00 0.20 0.00 1.68 0.00 0.00 1.41 2.52 0.39 4.60 0.83 0.00 1.62 0.00 0.00 0.08 8 455183 Transcript 0 113.87 7.76 32.67 15.08 4.33 51.50 23.72 26.99 14.00 20.15 10.58 22.21 6.01 16.48 13.60 123.98 103.97 31.50 10.45 36.30 12.60 14.94 60.78 9 446521 Transcript 0 23.17 15.15 27.95 18.83 17.45 19.64 22.81 19.26 31.86 36.76 66.86 40.82 26.47 63.12 30.27 56.63 81.77 54.23 25.48 68.99 29.44 44.20 49.67 10 400981 Transcript 0 3.78 5.85 5.65 1.93 6.62 8.92 5.43 3.91 6.65 6.85 1.26 3.27 1.48 5.18 5.10 2.41 4.84 3.42 1.02 8.09 2.37 1.45 1.60 11 ER1a ExonRegion 0 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 1.45 0.00 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.55 0.00 2.20 12 E1_Af KnownBoundary 0 25.93 0.00 0.00 2.03 0.00 2.78 6.58 2.42 0.00 9.24 5.21 0.00 0.00 0.00 6.30 0.00 0.00 2.07 0.00 0.00 6.05 0.00 8.37 13 ER1b ExonRegion 0 11.91 2.03 4.14 0.17 0.00 0.00 0.00 0.00 1.08 3.87 4.11 0.00 0.00 2.03 2.90 6.32 0.00 4.62 1.19 3.46 16.53 0.00 12.11 14 ER1c ExonRegion 1 17.46 4.07 8.58 1.36 0.00 0.00 0.00 1.30 1.24 8.32 6.28 0.00 0.00 3.65 2.90 19.32 0.00 7.39 3.19 10.11 30.30 0.00 22.76 15 ER1d ExonRegion 1 32.41 5.08 10.95 1.36 0.33 0.46 0.00 4.21 1.54 10.32 7.73 0.00 0.00 6.09 4.71 26.19 0.41 7.39 3.19 13.83 34.71 0.00 37.26 16 ER1e ExonRegion 1 38.10 6.10 13.48 1.36 2.68 3.67 0.44 8.64 3.71 11.47 7.73 0.00 0.00 8.12 5.80 38.64 6.60 7.39 3.19 23.40 37.46 0.00 38.18 17 ER1f ExonRegion 0 16.50 5.60 32.96 1.03 7.33 16.93 4.95 11.65 12.03 16.62 5.01 5.84 0.00 3.48 6.73 25.07 12.53 2.46 1.15 42.89 14.31 3.08 18.47 18 E1a_E2a KnownJunction 0 0.00 2.76 33.68 0.00 0.00 11.87 7.38 9.78 15.83 11.74 5.16 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.00 21.28 0.00 0.00 4.35 19 ER2a ExonRegion 0 0.12 0.35 13.14 0.00 0.31 1.92 3.13 4.20 5.86 11.31 0.40 1.36 0.00 0.36 1.25 0.62 3.49 0.00 0.00 6.16 0.00 0.00 0.75 20 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3a ExonRegion 0 3.25 4.82 52.55 6.71 4.32 4.41 4.09 16.91 12.28 36.62 9.07 3.69 1.47 14.52 11.85 41.74 28.21 13.83 4.49 40.39 20.58 11.86 23.66 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4a ExonRegion 0 1.22 0.88 7.40 0.57 2.19 3.06 9.45 4.17 9.46 27.04 6.30 5.20 1.21 18.38 7.74 3.45 3.42 1.86 0.00 7.83 1.12 5.72 6.28 25 E4_Da KnownBoundary 0 0.00 0.00 1.36 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 26 E4a_E5a KnownJunction 1 0.00 0.00 23.33 0.00 0.00 2.61 15.46 0.00 21.44 48.16 21.16 0.00 0.00 68.99 8.90 0.00 0.00 0.00 0.00 12.02 0.00 22.60 23.05 27 ER4b ExonRegion 0 0.81 1.25 3.13 3.00 2.02 0.00 7.56 0.90 2.05 1.64 4.40 9.13 2.74 8.82 3.04 11.61 7.92 5.97 0.00 6.35 2.37 5.99 3.89 28 E4_Db NovelBoundary 0 20.74 16.38 11.29 10.39 47.88 19.08 35.02 2.55 8.85 12.89 18.79 12.60 7.63 11.95 28.80 18.20 29.17 10.36 13.55 10.29 5.31 10.78 28.00 29 E4b_E5a KnownJunction 0 0.00 0.00 2.66 2.63 0.00 0.00 0.00 0.00 4.46 3.01 2.58 6.15 5.84 0.00 0.00 7.86 4.77 0.00 0.00 0.00 0.00 5.57 3.50 30 ER5a ExonRegion 1 8.11 7.12 67.91 18.00 6.02 29.80 11.81 30.10 30.26 100.45 46.47 14.25 7.04 57.39 8.22 23.03 54.05 32.18 17.12 41.22 31.22 19.01 23.98 31 ER5b ExonRegion 0 24.71 19.34 70.72 29.77 24.14 39.23 19.88 47.11 44.13 93.03 66.64 26.25 18.46 47.21 25.51 46.18 53.33 51.67 13.80 74.06 32.27 34.46 39.09 32 E5_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 2.37 0.00 0.00 0.00 0.00 0.00 9.54 0.00 0.00 0.00 0.00 0.00 0.00 33 E5b_E6a KnownJunction 0 35.34 32.10 62.39 10.92 34.47 39.69 49.11 27.07 32.58 79.16 93.81 59.42 32.63 83.35 40.42 79.55 40.77 14.72 8.19 91.47 9.76 37.60 71.11 34 ER5c ExonRegion 0 0.11 0.00 1.16 2.01 0.00 4.63 3.24 0.00 0.20 0.00 1.68 0.00 0.00 1.41 2.52 0.39 4.60 0.83 0.00 1.62 0.00 0.00 0.08 35 E5_Dc NovelBoundary 0 17.93 0.00 13.51 10.95 17.15 30.61 39.04 4.68 3.24 3.28 5.32 7.50 6.82 0.00 5.81 20.42 18.05 13.18 4.33 16.11 0.00 2.45 36.19 36 ER6a ExonRegion 0 18.81 26.50 99.54 38.23 24.05 23.85 22.41 54.99 47.22 111.72 77.93 20.83 16.43 53.61 21.05 59.06 71.93 64.34 15.05 85.02 39.30 32.74 40.27 37 E6_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E6a_E7a KnownJunction 0 45.12 32.49 125.96 7.79 78.69 79.90 32.68 50.19 35.76 128.53 85.65 28.81 54.05 141.68 75.90 161.92 136.14 21.18 11.01 156.98 14.58 75.32 87.16 39 ER6b ExonRegion 0 52.71 41.29 48.22 20.11 30.10 13.66 33.71 16.21 10.79 19.12 17.51 13.77 8.93 7.51 10.85 25.09 15.96 13.10 7.66 22.82 5.22 9.44 6.40 40 E6_Db NovelBoundary 0 154.25 21.64 52.42 31.80 130.48 15.10 65.98 33.02 19.33 31.48 9.90 13.65 14.61 9.59 20.27 37.77 16.92 3.52 13.65 11.89 0.00 8.76 7.26 41 E7_Aa NovelBoundary 0 20.37 3.35 9.52 0.00 0.00 0.00 5.39 5.75 0.00 4.65 2.68 0.00 0.00 0.00 0.00 8.20 3.83 0.00 0.00 0.00 0.00 0.00 8.71 42 ER7a ExonRegion 0 7.54 7.39 63.49 16.37 29.65 29.62 11.40 26.56 26.20 54.93 27.64 16.05 20.93 36.89 22.03 56.88 49.49 33.15 10.67 57.91 3.91 25.46 27.77 43 E7_Da NovelBoundary 0 0.00 3.35 20.67 9.06 12.31 0.00 1.81 11.71 6.57 30.27 0.00 0.00 0.00 7.71 0.00 4.36 3.83 6.67 0.00 8.63 0.00 2.76 4.01 44 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER8a ExonRegion 0 9.77 16.97 35.10 5.35 12.05 22.61 15.32 16.83 12.20 21.99 16.40 5.15 5.61 24.37 18.35 41.06 23.56 9.75 1.88 29.98 2.16 19.82 15.95 46 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER8b ExonRegion 0 12.82 11.13 31.00 6.37 8.41 9.21 12.95 22.38 9.16 23.20 13.47 9.07 6.53 12.75 16.04 16.80 11.43 11.86 6.63 10.55 2.93 14.69 5.80 49 ER9a ExonRegion 0 1.91 4.44 7.32 0.00 7.14 16.19 17.31 1.20 0.67 7.40 7.34 0.00 1.59 5.82 6.57 6.28 1.38 0.00 0.00 10.07 0.91 4.40 7.86 50 E9_Ab KnownBoundary 1 212.85 122.81 365.21 197.28 93.80 225.04 139.42 148.93 201.18 275.52 542.77 101.43 104.21 580.67 476.92 720.07 554.00 605.92 225.23 311.66 364.24 194.91 240.04 51 ER9b ExonRegion 1 8.23 0.79 8.76 0.72 3.38 8.56 10.41 11.11 13.48 23.51 11.92 2.53 2.21 6.65 3.43 0.87 12.06 5.06 0.00 14.69 0.18 1.42 5.59 52 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 ER10a ExonRegion 0 16.20 8.24 22.63 3.46 11.87 16.60 11.28 13.19 28.18 53.26 38.00 7.54 9.49 20.73 14.98 16.28 13.16 10.25 4.82 36.47 1.91 8.06 22.49 54 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 I10 Intron 0 14.66 3.06 7.86 6.85 9.51 1.78 8.03 5.64 2.77 7.79 3.68 10.73 5.09 2.62 3.55 9.92 5.09 5.97 1.37 11.76 2.14 2.62 8.22 56 I10_SR1 SilentIntronRegion 0 21.92 4.51 9.75 7.82 15.32 2.91 11.71 8.06 3.34 9.51 4.42 16.14 9.15 3.48 5.25 14.39 7.28 4.39 1.40 14.10 2.18 2.72 10.23 57 I10_AR1 ActiveIntronRegion 0 7.98 1.77 11.10 11.32 3.59 3.28 7.54 6.26 2.56 8.92 8.17 13.33 6.09 3.50 3.97 14.89 8.83 9.43 4.22 16.05 4.83 3.49 19.96 58 I10_AR2 ActiveIntronRegion 0 11.64 2.40 6.72 6.21 6.56 0.75 6.05 4.14 2.71 7.17 2.79 7.01 1.65 1.97 2.46 6.43 3.14 7.78 1.05 10.64 1.96 2.81 5.49 59 ER11a ExonRegion 0 36.48 20.44 63.94 60.30 37.18 57.54 78.83 58.88 75.68 149.13 75.56 60.90 26.18 73.21 40.64 52.30 47.13 121.21 43.45 71.28 49.26 35.52 64.25 60 E11_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 ER11b ExonRegion 0 23.17 15.15 27.95 18.83 17.45 19.64 22.81 19.26 31.86 36.76 66.86 40.82 26.47 63.12 30.27 56.63 81.77 54.23 25.48 68.99 29.44 44.20 49.67 63 E11_Db NovelBoundary 0 5.78 11.31 19.46 8.46 11.88 2.44 33.08 10.15 16.23 23.75 32.53 6.30 19.97 26.43 4.45 40.50 71.53 30.80 0.00 54.01 2.66 32.33 66.84 64 I11 Intron 0 10.02 3.97 3.88 2.45 7.06 5.47 6.99 2.73 4.01 7.35 14.75 14.16 7.85 13.47 5.92 13.98 13.44 5.48 1.01 13.06 2.72 9.86 12.80 65 I11_SR1 SilentIntronRegion 1 4.85 2.54 3.59 0.71 6.78 0.81 4.07 0.84 4.06 4.94 17.91 12.84 11.54 15.12 5.51 17.45 14.08 4.71 0.56 14.11 0.39 8.45 11.14 66 I11_AR1 ActiveIntronRegion 0 7.44 2.66 2.65 0.00 6.37 0.92 2.89 0.13 2.44 8.36 14.80 11.69 8.44 9.99 1.82 11.59 12.45 0.41 0.00 11.27 0.00 10.80 16.19 67 I11_SR2 SilentIntronRegion 1 14.39 4.60 5.37 2.39 7.49 9.40 10.37 3.57 5.11 10.92 16.64 27.61 9.24 13.41 9.28 15.48 16.00 10.76 1.75 17.03 5.88 10.25 14.59 68 I11_AR2 ActiveIntronRegion 0 14.12 6.14 3.52 6.60 7.49 10.76 10.19 6.25 3.88 6.06 8.40 3.12 0.94 13.80 5.76 9.39 10.54 4.40 1.52 8.62 4.38 10.71 10.73 69 ER12a ExonRegion 0 14.61 14.43 39.99 45.92 23.44 39.90 31.54 36.22 49.47 83.53 33.65 33.55 17.38 33.24 15.18 20.41 5.51 109.53 32.39 49.07 31.38 13.56 25.83 70 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER13a ExonRegion 0 17.89 13.35 39.43 37.37 15.40 28.89 43.34 49.31 53.64 64.59 53.47 34.70 13.46 45.33 30.96 38.59 21.67 106.62 43.11 66.95 27.71 18.91 37.93 72 E13a_E14a KnownJunction 1 43.93 34.99 65.96 80.61 66.81 23.62 68.14 64.61 89.81 111.18 106.45 52.37 26.78 73.87 45.24 67.08 11.87 176.51 79.91 110.26 50.29 32.88 23.73 73 ER14a ExonRegion 0 124.99 39.19 106.31 91.71 93.13 80.22 81.45 105.00 134.09 175.94 141.05 108.92 72.28 155.13 91.90 129.86 100.07 262.23 91.31 199.78 81.65 42.60 98.02 74 E14_Da KnownBoundary 0 89.72 25.13 61.71 18.51 15.28 55.14 23.80 37.50 24.39 36.91 22.37 6.30 0.00 41.38 31.03 108.09 85.18 63.55 9.60 67.30 19.34 15.19 52.33 75 E14a_E14b KnownJunction 0 113.87 7.76 32.67 15.08 4.33 51.50 23.72 26.99 14.00 20.15 10.58 22.21 6.01 16.48 13.60 123.98 103.97 31.50 10.45 36.30 12.60 14.94 60.78 76 E14a_E15b KnownJunction 0 34.08 9.14 25.31 0.00 36.33 17.94 13.56 10.97 28.79 71.21 46.17 37.21 20.45 30.26 4.45 22.30 29.45 0.00 0.00 55.67 0.00 9.86 41.66 77 ER14b ExonRegion 0 91.22 120.45 130.52 83.21 87.79 88.93 102.97 100.18 111.85 165.65 75.61 98.09 77.09 127.04 85.17 101.01 95.70 137.94 59.74 166.49 38.25 55.66 50.84 78 E14_Ab KnownBoundary 0 28.30 2.57 34.18 0.00 12.31 0.00 10.02 4.60 8.45 15.15 19.27 37.21 19.80 2.47 15.45 8.72 4.68 0.00 0.00 8.88 0.00 0.00 8.45 79 ER14c ExonRegion 1 119.53 105.51 146.39 70.32 75.92 54.01 75.50 72.23 64.96 99.86 44.75 133.81 104.16 68.55 68.58 82.39 54.08 57.90 21.26 88.10 16.76 37.50 63.34 80 E14_Db KnownBoundary 0 54.90 53.28 14.25 0.00 56.37 12.27 34.18 6.65 11.02 8.92 123.93 66.32 97.23 219.61 246.49 102.37 70.22 2.16 10.92 66.60 20.02 36.92 48.74 81 ER14d ExonRegion 1 45.04 58.64 41.25 17.86 57.42 55.25 56.38 38.56 41.50 34.20 29.71 67.99 39.39 46.66 35.22 45.49 30.20 57.12 28.22 56.67 16.71 20.95 33.95 82 E14_Dc NovelBoundary 0 31.19 3.35 11.38 0.00 12.05 7.78 1.85 4.19 5.18 9.62 2.16 19.81 7.95 2.24 9.64 0.00 0.00 0.00 0.00 3.26 0.00 3.12 0.00 83 I14 Intron 0 17.81 17.12 13.92 11.49 33.77 26.27 20.57 20.68 16.25 19.35 15.24 24.57 16.92 25.76 16.44 17.59 8.69 28.05 17.17 25.18 12.73 11.23 16.61 84 I14_AR1 ActiveIntronRegion 0 33.08 23.44 24.78 19.21 48.42 36.20 34.29 41.32 28.77 32.34 12.72 28.80 20.08 18.31 10.25 20.78 5.43 43.79 20.96 28.88 9.97 19.71 18.12 85 I14_SR1 SilentIntronRegion 1 28.66 34.97 23.76 21.18 62.69 55.35 36.64 28.27 27.94 35.69 39.21 57.39 41.59 73.47 52.10 43.34 25.83 55.62 39.82 63.16 36.65 18.45 39.76 86 E15_Aa NovelBoundary 0 47.27 67.22 68.33 46.58 63.16 80.81 38.91 44.03 43.63 63.31 50.33 24.76 58.60 12.01 26.82 53.15 17.30 48.71 42.82 64.81 25.39 39.43 31.67 87 ER15a ExonRegion 0 3.78 5.85 5.65 1.93 6.62 8.92 5.43 3.91 6.65 6.85 1.26 3.27 1.48 5.18 5.10 2.41 4.84 3.42 1.02 8.09 2.37 1.45 1.60 88 E15_Ab KnownBoundary 0 3.48 2.96 11.32 0.00 7.47 13.12 10.82 2.55 8.16 9.86 5.05 6.30 6.82 12.54 0.00 0.00 0.00 1.91 0.00 18.09 0.00 6.00 0.00 89 ER15b ExonRegion 0 23.12 7.39 25.76 5.03 31.75 26.55 20.73 11.67 34.54 80.46 47.24 45.71 17.95 29.36 24.49 22.01 29.39 9.88 1.16 58.96 1.91 17.31 39.93 90 E15_Da KnownBoundary 0 186.70 92.42 167.59 129.52 219.52 119.99 84.04 116.03 191.78 194.27 61.54 42.76 40.09 46.32 41.16 101.51 82.56 184.67 54.59 91.02 35.71 34.23 26.04 91 ER15c ExonRegion 0 8.61 4.49 7.52 0.81 9.72 15.11 10.57 4.84 11.60 24.69 13.47 10.19 2.88 9.14 8.93 15.25 9.14 4.91 1.67 16.13 0.81 6.91 7.09