Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNF168 Gene 0 20.29 51.16 31.57 36.82 40.75 19.90 39.33 27.27 24.84 39.16 81.23 93.11 76.84 49.61 37.64 77.62 47.20 65.98 24.40 43.94 22.97 26.93 26.67 2 318037 Transcript 0 19.46 35.24 26.05 31.45 31.10 14.46 41.46 23.32 24.02 35.93 47.90 75.07 62.28 67.58 37.67 84.33 65.36 63.36 18.42 47.84 27.17 22.98 27.43 3 437070 Transcript 0 0.00 0.00 1.74 2.06 3.40 2.10 0.00 0.00 1.16 0.00 0.00 0.00 0.00 2.41 0.00 8.03 0.00 14.76 0.00 0.00 5.68 5.82 0.00 4 ER1a ExonRegion 0 12.98 10.06 4.32 3.67 4.01 7.73 14.22 6.69 6.22 2.98 19.10 0.89 0.00 7.68 8.89 58.54 16.79 40.03 5.85 14.48 14.16 5.10 22.31 5 E1_Ab KnownBoundary 0 6.96 12.10 3.19 5.13 7.89 2.84 23.36 11.13 10.79 6.82 42.48 5.70 5.68 14.54 22.62 96.38 27.68 105.17 13.46 26.97 17.24 5.76 11.35 6 ER1b ExonRegion 0 14.13 27.01 39.05 26.66 28.76 20.04 35.35 37.16 35.40 57.39 146.44 60.71 64.87 84.44 61.27 122.83 82.04 145.27 37.53 84.97 50.16 25.47 37.34 7 E1_Da NovelBoundary 0 6.15 2.76 21.23 16.18 39.90 14.20 9.54 4.07 13.02 13.19 24.16 6.30 0.00 3.00 25.22 19.14 3.65 21.02 3.86 20.58 3.15 0.00 0.00 8 E1a_E2a KnownJunction 1 6.15 26.18 25.69 34.93 20.71 7.84 24.16 32.49 35.33 67.53 35.06 36.01 80.68 81.82 50.93 71.86 85.93 41.41 24.19 66.92 33.55 14.94 12.38 9 E1a_E3a KnownJunction 0 0.00 0.00 1.74 2.06 3.40 2.10 0.00 0.00 1.16 0.00 0.00 0.00 0.00 2.41 0.00 8.03 0.00 14.76 0.00 0.00 5.68 5.82 0.00 10 I1 Intron 0 8.64 10.75 5.72 10.27 15.07 4.03 13.99 5.16 3.66 7.00 5.35 11.04 13.26 3.37 10.92 13.29 5.22 9.06 3.26 12.33 2.06 2.07 5.26 11 I1_AR1 ActiveIntronRegion 0 3.03 0.00 0.05 0.00 3.79 0.00 5.63 1.80 0.00 0.00 1.40 3.07 8.21 4.60 11.36 25.26 4.68 2.62 4.51 9.04 0.03 0.00 2.08 12 I1_SR1 SilentIntronRegion 0 8.77 10.99 5.84 10.50 15.32 4.12 14.18 5.23 3.74 7.16 5.44 11.22 13.37 3.34 10.92 13.04 5.24 9.21 3.24 12.41 2.10 2.12 5.34 13 ER2a ExonRegion 0 23.75 47.27 35.46 49.75 44.62 15.27 60.33 28.89 31.26 47.53 72.92 127.35 101.05 121.05 51.96 133.82 84.07 87.71 22.30 79.36 46.34 25.62 45.84 14 E2a_E3a KnownJunction 0 48.16 74.07 52.95 57.73 70.97 33.96 95.44 39.64 40.42 52.81 92.92 188.31 117.52 115.78 65.76 138.77 128.47 138.54 34.17 70.69 38.24 59.95 51.56 15 E3_Aa NovelBoundary 0 59.71 35.65 15.23 22.47 37.52 0.00 49.24 0.00 1.77 7.68 10.16 26.41 34.25 0.00 19.66 19.91 9.54 15.17 8.85 9.20 5.56 0.00 4.35 16 ER3a ExonRegion 0 73.73 102.81 61.22 92.59 95.08 44.68 96.71 46.36 43.41 83.25 182.20 246.61 181.45 115.53 86.12 183.99 117.46 153.81 69.14 110.41 64.85 71.30 76.91 17 E3_Da NovelBoundary 1 19.71 24.34 30.45 29.53 12.05 20.78 39.39 8.50 19.44 23.77 26.11 87.93 35.55 17.31 32.76 37.94 8.51 71.71 25.60 42.82 7.85 8.33 49.34 18 E3a_E4a KnownJunction 0 7.19 80.91 33.12 45.55 64.94 12.15 71.76 49.04 44.53 91.33 173.68 283.44 149.34 85.35 75.65 89.46 74.89 84.73 31.62 66.67 25.95 91.54 46.95 19 I3 Intron 0 24.31 32.50 18.67 25.84 27.27 5.45 21.95 11.57 8.68 15.95 16.34 33.15 30.02 10.37 17.62 27.75 11.49 20.81 13.00 25.19 3.91 9.62 7.44 20 I3_SR1 SilentIntronRegion 0 24.34 32.54 18.69 25.87 27.31 5.46 21.98 11.59 8.69 15.97 16.36 33.19 30.06 10.38 17.64 27.79 11.51 20.83 13.01 25.22 3.91 9.64 7.45 21 E4_Aa NovelBoundary 1 17.56 82.35 39.74 83.44 40.07 14.03 56.13 41.65 20.72 48.30 26.48 99.93 21.91 9.48 33.01 18.54 8.13 7.38 13.18 30.68 3.03 34.47 3.33 22 ER4a ExonRegion 0 68.98 125.52 54.43 93.66 117.84 36.50 106.22 60.78 54.51 105.33 196.38 336.81 281.48 107.87 85.33 161.37 81.22 97.20 48.82 106.50 34.14 79.31 61.98 23 E4_Da NovelBoundary 1 20.45 68.61 26.82 43.55 52.38 5.79 37.23 18.81 26.39 36.48 27.59 87.93 99.51 15.07 14.09 30.68 16.74 11.65 12.61 15.47 2.72 8.82 16.30 24 E4a_E5a KnownJunction 0 39.71 132.94 46.36 64.56 161.80 52.98 149.18 72.25 48.55 105.30 230.16 412.18 296.73 127.97 61.44 165.43 143.15 108.48 49.60 151.29 37.13 97.79 43.88 25 I4 Intron 0 25.57 34.68 23.14 26.07 26.23 6.32 18.97 15.07 11.56 18.62 14.30 29.54 28.32 6.38 17.35 23.80 9.78 13.30 8.41 18.49 2.85 9.20 7.17 26 I4_SR1 SilentIntronRegion 0 23.43 40.95 18.35 20.16 22.83 4.83 18.05 12.40 9.52 15.04 12.86 23.81 25.11 6.07 17.01 24.06 9.08 12.91 7.49 17.76 2.48 6.35 7.38 27 I4_AR1 ActiveIntronRegion 0 31.89 27.87 40.11 44.25 34.39 9.80 25.93 20.51 18.36 26.14 21.68 50.16 36.18 6.14 18.83 25.19 12.88 16.14 8.24 23.87 2.96 18.08 6.25 28 I4_SR2 SilentIntronRegion 0 25.06 27.07 18.87 24.33 26.47 5.10 11.83 17.45 10.10 16.36 9.29 22.07 23.88 7.34 18.10 17.64 6.43 12.42 10.88 15.27 4.15 10.19 6.96 29 I4_SR3 SilentIntronRegion 1 33.88 21.49 28.01 33.09 41.63 16.11 33.21 18.23 16.97 40.66 16.79 28.69 26.88 6.36 18.97 28.56 17.22 12.74 14.57 15.76 4.37 6.25 7.23 30 I4_AR2 ActiveIntronRegion 0 14.66 17.67 18.52 19.08 15.10 4.62 8.17 14.04 5.76 19.53 16.13 42.87 65.43 9.22 7.41 36.84 10.35 7.37 5.98 17.55 0.41 4.24 10.30 31 E5_Aa NovelBoundary 1 28.15 17.69 43.82 44.75 19.19 5.34 27.78 28.88 21.01 35.22 17.06 45.46 53.89 6.95 38.94 45.37 17.48 13.18 40.57 24.80 9.45 17.02 8.54 32 ER5a ExonRegion 0 41.25 108.25 53.35 78.68 135.42 51.15 129.72 49.20 50.43 92.70 201.73 372.44 312.57 109.51 87.99 162.13 90.37 123.51 38.85 109.42 33.35 63.29 60.52 33 E5_Da NovelBoundary 0 14.89 8.62 21.29 10.49 4.33 0.00 8.39 16.76 2.66 10.26 17.48 0.00 12.99 2.24 9.89 7.60 8.42 2.57 4.33 8.25 0.00 2.57 0.00 34 E5a_E6a KnownJunction 1 53.05 108.07 53.28 94.53 63.16 61.78 96.54 59.15 38.74 103.77 166.83 287.04 425.30 109.84 67.25 195.42 69.19 117.06 24.94 112.88 43.24 43.41 40.21 35 I5 Intron 0 18.73 18.65 10.43 10.78 9.26 2.80 8.31 5.39 4.44 6.46 4.97 6.43 8.34 1.78 5.29 8.13 2.39 2.22 4.61 5.82 1.24 2.01 4.02 36 I5_AR1 ActiveIntronRegion 0 42.24 38.58 19.78 15.51 13.17 2.71 9.46 9.52 5.90 6.74 8.10 11.80 17.74 1.79 7.90 10.25 3.25 2.95 9.42 6.29 1.09 1.53 4.33 37 E6_Aa NovelBoundary 0 3.70 14.67 17.83 25.57 23.34 2.90 25.53 17.50 9.55 18.40 5.37 20.26 21.91 2.12 0.00 26.06 12.81 12.06 0.00 6.52 3.15 0.00 4.27 38 ER6a ExonRegion 0 49.70 147.16 76.07 102.15 101.80 48.83 94.48 65.95 61.50 96.38 175.61 251.99 219.21 108.56 80.84 176.57 104.15 146.77 59.04 93.04 47.77 64.84 64.75 39 E6_Da KnownBoundary 1 16.67 94.59 57.01 62.46 57.72 5.56 38.16 49.37 52.63 59.02 97.08 167.15 41.39 82.64 33.50 126.38 57.13 84.48 42.35 28.57 32.37 75.87 35.85 40 ER6b ExonRegion 0 6.27 18.64 11.83 11.18 15.21 7.48 13.18 8.90 6.88 8.81 19.49 22.79 12.17 11.57 10.80 18.68 11.56 9.14 5.58 7.75 3.57 9.30 5.04