Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DNAJC19 Gene 0 49.82 82.95 65.31 61.84 76.68 53.93 49.99 33.15 41.80 42.49 55.56 57.70 45.71 42.12 64.86 39.73 51.17 27.92 37.42 49.81 18.54 39.35 24.14 2 472504 Transcript 0 5.14 7.95 8.26 6.26 7.28 0.16 4.69 1.59 4.53 3.40 5.33 0.13 3.26 1.87 3.22 5.38 7.43 6.43 1.13 4.16 2.34 2.69 2.99 3 382564 Transcript 1 16.97 20.62 13.06 13.67 24.17 4.93 17.63 6.99 6.85 10.68 3.23 15.63 8.65 2.77 8.30 6.64 2.63 1.62 9.01 10.07 0.00 5.83 6.10 4 486355 Transcript 0 0.00 6.12 2.87 0.00 0.00 6.47 0.00 7.43 10.27 2.90 2.47 0.00 24.51 2.47 31.77 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 482363 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 478723 Transcript 1 21.27 21.05 14.90 18.46 25.84 16.01 12.33 12.73 17.01 12.60 7.41 25.93 20.63 9.51 8.10 3.97 6.24 2.96 1.26 9.12 1.73 12.11 2.78 7 485675 Transcript 1 16.13 39.66 9.89 21.30 31.14 11.49 17.21 13.45 15.09 17.87 13.48 34.44 47.96 13.39 12.64 13.22 10.59 4.64 5.61 21.74 2.02 12.22 6.80 8 491873 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 469657 Transcript 0 9.63 2.50 9.05 43.78 15.96 11.92 10.02 22.80 11.31 1.48 25.22 25.51 19.48 28.67 33.01 33.07 40.95 3.19 8.38 8.37 0.00 29.33 53.78 10 479269 Transcript 0 0.00 1.69 1.75 2.20 2.55 0.75 0.89 2.09 3.00 3.26 1.39 0.00 0.53 2.75 0.57 1.63 1.35 4.36 2.62 1.19 0.60 0.57 1.98 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1_Ae KnownBoundary 0 13.56 13.16 1.77 0.00 8.32 19.48 8.17 2.34 1.45 1.64 7.69 0.00 0.00 4.89 13.35 4.27 4.11 2.36 4.80 0.00 0.00 9.25 8.71 13 ER1b ExonRegion 0 2.12 0.51 0.00 0.00 3.34 3.21 0.33 0.00 0.00 0.86 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 2.08 0.00 14 ER1c ExonRegion 0 4.23 4.07 0.00 0.00 5.35 7.34 1.32 0.00 0.00 1.15 3.54 0.00 0.00 0.00 5.80 0.00 0.00 1.85 3.19 0.00 0.00 4.17 0.00 15 ER1d ExonRegion 0 24.82 19.04 7.58 4.27 12.65 29.59 13.48 0.00 0.73 2.71 9.75 0.00 0.00 6.28 15.96 4.73 11.70 4.37 5.21 0.48 4.41 19.04 14.42 16 E1_Af KnownBoundary 0 88.16 52.56 5.26 4.06 20.88 55.54 37.80 0.00 0.00 3.06 18.58 0.00 0.00 12.18 19.16 21.53 37.96 6.59 18.26 3.13 12.36 30.86 34.32 17 E1_Ag KnownBoundary 0 10.96 16.58 5.29 4.13 16.13 11.47 6.67 0.00 3.59 3.28 5.05 0.00 0.00 2.47 0.00 8.72 4.77 9.70 0.00 0.00 0.00 6.00 8.62 18 ER1e ExonRegion 1 67.43 56.50 19.96 8.66 45.11 78.07 34.71 2.59 6.44 5.57 25.13 0.00 0.00 33.76 40.62 33.12 37.02 18.08 10.69 6.69 12.28 33.63 48.24 19 E1_Ah KnownBoundary 1 487.49 223.05 34.27 35.06 348.39 480.52 186.37 39.92 23.12 28.12 113.08 0.00 12.99 112.01 171.09 170.98 115.75 111.51 119.44 88.65 84.39 138.63 158.35 20 ER1f ExonRegion 1 265.69 151.32 38.71 24.93 182.42 270.97 103.58 21.76 16.27 20.24 86.87 0.00 2.48 127.92 159.57 134.44 91.45 67.06 55.46 47.31 49.00 90.33 138.02 21 ER1g ExonRegion 1 398.81 231.83 85.43 59.58 299.68 446.14 181.38 40.25 31.41 44.07 149.39 10.51 44.22 216.94 267.33 275.56 172.12 133.04 142.43 93.31 96.33 138.70 230.74 22 ER1h ExonRegion 1 274.00 441.84 179.01 147.91 465.01 473.51 356.34 82.51 87.18 125.97 303.43 21.35 67.62 205.24 335.84 330.77 331.66 276.75 239.98 195.25 118.29 109.23 215.86 23 E1a_E3a KnownJunction 0 15.71 52.69 70.10 42.85 135.57 41.06 64.52 29.12 34.29 27.80 61.65 6.30 26.13 28.96 65.76 32.30 64.98 49.74 37.74 45.06 26.75 21.68 23.47 24 E1a_E3b KnownJunction 0 0.00 3.35 6.98 1.23 20.71 0.00 1.63 2.55 1.10 5.21 2.68 0.00 0.00 2.24 6.30 0.00 4.39 0.00 0.00 2.49 0.00 0.00 0.00 25 ER2a ExonRegion 0 0.00 3.37 3.50 4.40 5.11 1.50 1.77 2.26 5.99 6.53 0.20 0.00 1.05 3.38 1.13 3.26 2.70 8.72 1.57 2.38 1.20 1.14 0.80 26 E2_Da NovelBoundary 0 0.00 12.76 11.77 19.71 3.57 2.73 6.23 2.26 4.46 4.67 2.68 12.30 0.00 0.00 4.45 7.09 3.55 3.86 4.80 8.82 2.47 6.00 0.00 27 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 2.58 0.00 0.00 2.12 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 3.16 28 I2_AR1 ActiveIntronRegion 0 3.86 5.74 13.44 14.78 2.22 5.31 0.96 3.54 5.90 7.37 2.30 0.86 0.93 2.89 2.06 2.90 5.44 9.01 4.35 6.67 1.07 2.44 2.32 29 ER3a ExonRegion 1 15.67 44.27 95.15 57.61 80.17 30.15 22.97 49.09 54.23 83.81 264.29 8.49 33.10 66.87 105.28 37.95 235.63 37.27 48.52 85.39 138.45 61.54 24.51 30 E3_Da KnownBoundary 0 13.26 20.79 7.81 15.65 18.00 0.00 5.96 2.26 3.24 5.86 4.79 0.00 0.00 4.53 0.00 7.52 4.21 9.78 3.58 16.94 3.15 2.27 0.00 31 E3a_E3b KnownJunction 1 26.60 60.78 154.16 103.35 122.67 29.07 20.76 65.60 84.66 142.80 521.61 24.31 86.36 102.36 180.85 40.50 550.35 42.49 71.06 133.78 253.84 81.38 46.61 32 ER3b ExonRegion 0 10.27 15.90 16.53 12.52 13.22 0.31 9.38 3.18 9.07 6.80 9.69 0.26 6.52 3.74 6.44 10.76 14.85 12.87 2.25 8.33 4.68 5.39 5.98 33 E3_Ab KnownBoundary 0 7.04 31.18 28.62 17.85 32.94 0.00 9.80 6.61 13.63 7.49 4.74 0.00 6.82 2.94 5.19 7.78 4.77 8.75 4.42 8.56 2.72 5.14 0.00 34 ER3c ExonRegion 1 71.56 128.31 296.41 231.84 79.06 22.56 41.62 137.52 138.60 190.50 557.65 119.92 108.13 383.74 672.10 399.40 525.52 199.66 334.07 288.22 164.95 278.79 274.27 35 E3_Db KnownBoundary 0 10.00 20.65 26.73 21.51 28.27 15.10 15.59 21.60 13.05 4.41 20.69 24.01 6.33 12.83 10.14 39.65 4.68 28.48 4.42 27.87 5.19 12.31 15.79 36 E3b_E3c KnownJunction 0 87.42 213.51 443.48 417.23 85.57 74.79 82.54 194.12 190.57 242.59 345.40 243.83 153.72 397.44 907.97 492.78 310.14 330.51 409.42 381.39 92.11 201.15 170.56 37 E3b_E4a KnownJunction 0 9.63 2.50 9.05 43.78 15.96 11.92 10.02 22.80 11.31 1.48 25.22 25.51 19.48 28.67 33.01 33.07 40.95 3.19 8.38 8.37 0.00 29.33 53.78 38 ER3d ExonRegion 0 13.52 22.37 18.48 26.53 23.67 16.34 17.55 9.09 18.25 13.67 21.31 23.29 11.35 16.78 11.68 16.87 16.73 12.70 7.78 16.65 5.71 15.12 4.37 39 E3_Dc KnownBoundary 0 10.37 17.89 16.23 14.35 11.46 17.60 15.90 4.27 8.19 14.80 28.27 35.41 20.45 14.01 15.08 15.21 8.88 3.32 3.58 9.14 10.75 8.82 0.00 40 ER3e ExonRegion 1 15.22 51.40 14.25 25.75 24.54 13.43 17.27 11.34 17.92 10.92 10.32 24.64 37.68 10.62 10.40 8.47 11.84 3.09 1.27 16.97 1.72 11.15 6.20 41 E3_Dd KnownBoundary 1 23.63 84.39 14.75 22.27 99.24 11.36 47.92 11.09 12.18 12.73 2.26 31.06 75.64 7.24 5.81 7.78 9.26 0.00 0.00 20.45 2.84 8.39 3.84 42 ER3f ExonRegion 1 14.17 57.79 9.29 23.23 30.53 8.87 19.93 17.56 14.90 18.23 13.03 42.12 56.99 11.93 10.52 12.62 11.07 4.09 6.45 26.39 2.15 12.20 6.02 43 E3_Ac KnownBoundary 0 12.67 73.21 8.60 14.62 31.58 7.38 33.03 16.18 19.39 19.90 18.27 12.60 43.67 14.19 0.00 3.76 8.88 0.00 0.00 22.43 0.00 2.57 0.00 44 E3e_E4a KnownJunction 1 0.00 6.12 2.87 0.00 0.00 6.47 0.00 7.43 10.27 2.90 2.47 0.00 24.51 2.47 31.77 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER3g ExonRegion 0 71.34 291.48 333.35 260.59 199.68 122.41 81.70 153.04 158.20 205.68 317.32 185.45 250.92 237.26 540.00 346.62 290.48 264.84 302.34 298.58 89.62 134.91 151.60 46 ER3h ExonRegion 0 74.92 267.69 266.31 208.35 336.12 233.16 138.22 111.88 107.37 166.22 217.96 141.22 204.91 89.92 206.36 124.88 176.93 137.67 133.84 201.20 66.47 76.45 82.39 47 E3_Df KnownBoundary 1 20.74 47.95 9.22 26.50 35.99 27.03 29.99 5.42 5.93 14.64 12.37 48.02 42.69 17.19 4.45 25.04 16.36 1.87 4.05 11.25 0.00 15.06 7.68 48 E3f_E4a KnownJunction 1 50.97 145.24 232.84 194.21 300.25 264.22 188.22 94.02 86.37 131.70 140.61 160.85 104.05 33.37 173.68 24.44 72.37 46.34 56.19 182.61 38.86 83.09 14.85 49 ER3i ExonRegion 1 18.09 21.53 10.48 19.37 31.75 14.11 14.48 9.35 15.29 17.50 13.92 26.77 38.92 14.85 14.76 13.82 10.11 5.19 4.78 17.09 1.90 12.24 7.57 50 E3_Dg NovelBoundary 0 20.52 18.29 6.39 13.48 37.10 21.12 13.25 12.16 12.67 15.98 16.69 27.01 39.45 14.07 8.90 11.71 12.72 14.80 4.61 8.88 2.35 8.39 3.76 51 I3 Intron 0 14.39 16.94 13.66 20.71 31.39 17.15 13.05 14.89 8.45 8.43 6.90 17.62 17.21 10.80 13.58 9.60 16.26 4.38 1.62 15.55 2.62 9.92 3.00 52 I3_SR1 SilentIntronRegion 0 7.53 8.72 7.37 9.33 35.01 25.78 20.09 6.57 1.46 2.51 3.95 9.52 11.46 8.79 9.45 4.71 18.25 1.03 1.77 8.81 2.33 4.35 4.82 53 I3_AR1 ActiveIntronRegion 0 16.62 19.61 15.70 24.38 30.55 14.63 11.00 17.57 10.67 10.32 7.87 20.24 19.13 11.51 14.96 11.18 15.78 5.45 1.59 17.76 2.74 11.71 2.46 54 E4_Aa NovelBoundary 1 22.45 47.89 18.18 23.11 35.31 39.58 30.43 33.19 25.26 17.46 4.90 25.21 46.43 4.59 14.59 3.59 0.00 5.72 0.00 17.58 0.00 9.00 4.01 55 ER4a ExonRegion 1 227.72 447.27 328.47 281.39 452.50 438.61 402.47 143.80 155.07 181.49 301.53 216.11 209.99 175.79 372.14 100.59 267.84 50.44 101.35 202.55 57.08 220.79 61.13 56 E4_Da KnownBoundary 1 18.15 36.64 8.22 27.27 16.55 4.71 6.27 21.81 12.38 12.38 5.21 6.30 68.18 2.47 8.90 4.36 9.07 3.86 0.00 12.21 0.00 2.69 7.26 57 E4a_E5a KnownJunction 1 747.17 1146.77 410.30 326.73 1029.71 941.28 851.72 155.88 167.88 213.10 377.46 324.26 394.45 363.00 850.73 182.94 479.10 49.87 186.17 250.94 90.32 360.73 75.63 58 ER4b ExonRegion 1 21.27 21.05 14.90 18.46 25.84 16.01 12.33 12.73 17.01 12.60 7.41 25.93 20.63 9.51 8.10 3.97 6.24 2.96 1.26 9.12 1.73 12.11 2.78 59 E4_Db NovelBoundary 1 51.79 38.94 31.22 27.20 65.62 30.04 19.03 8.91 14.18 12.89 4.84 18.31 30.03 4.77 10.51 11.54 8.70 6.30 0.00 14.64 0.00 8.76 7.94 60 I4 Intron 0 20.29 32.77 13.22 18.44 28.93 9.92 13.77 9.20 11.64 12.73 4.53 21.22 21.72 6.93 8.63 6.36 1.35 0.94 4.22 10.20 0.67 9.14 0.90 61 I4_AR1 ActiveIntronRegion 0 8.43 9.69 0.00 0.00 10.66 7.34 3.17 0.00 0.00 0.00 1.54 14.21 24.62 7.31 6.80 4.74 0.00 0.00 0.00 6.75 0.00 3.32 0.00 62 I4_SR1 SilentIntronRegion 0 22.19 36.40 15.27 21.29 31.82 10.37 15.42 10.62 13.44 14.70 5.01 22.40 21.45 6.92 8.96 6.64 1.56 1.09 4.87 10.78 0.78 10.06 1.04 63 E5_Aa NovelBoundary 0 55.19 75.38 16.20 41.12 68.25 2.90 38.02 9.82 15.71 19.15 12.74 6.30 26.78 2.47 4.45 11.28 0.00 0.00 13.27 17.64 0.00 8.70 4.35 64 ER5a ExonRegion 1 223.26 366.09 247.99 235.90 266.27 160.21 157.03 111.65 150.18 154.38 136.40 263.95 191.20 109.72 227.97 61.38 96.61 27.78 81.95 128.58 25.12 191.13 23.98 65 E5_Da KnownBoundary 1 226.34 453.08 175.33 191.35 203.40 76.49 150.99 101.66 139.12 120.85 55.07 261.99 211.19 86.41 203.47 46.40 9.07 13.72 51.11 68.84 16.12 102.32 15.88 66 ER5b ExonRegion 1 86.12 142.62 110.10 116.35 119.50 59.22 66.88 70.29 78.43 69.47 35.97 156.39 77.36 45.12 51.87 30.26 31.15 22.43 47.40 67.51 14.70 46.03 15.48 67 E5_Db KnownBoundary 0 40.53 51.96 30.87 60.37 19.35 33.39 17.80 26.16 24.16 21.81 18.22 11.85 6.66 16.48 9.64 16.06 15.52 6.47 27.11 19.37 2.97 28.72 0.00 68 E5_Dc KnownBoundary 0 33.86 40.39 38.56 26.54 79.12 37.76 32.95 28.34 24.94 24.82 19.37 31.96 6.33 6.65 31.52 3.33 15.99 10.07 24.85 39.12 16.68 30.86 3.50 69 ER5c ExonRegion 1 61.38 98.29 74.34 92.22 123.98 89.86 63.55 67.41 53.11 68.05 41.24 111.12 53.15 46.02 52.22 26.75 33.01 16.63 71.14 62.41 23.51 70.84 8.81 70 ER5d ExonRegion 1 44.88 50.41 87.61 69.80 57.64 32.97 45.04 36.03 55.93 44.50 27.42 66.91 19.44 34.15 34.43 21.65 27.54 22.01 48.64 59.26 19.50 27.55 14.17 71 E5_Dd KnownBoundary 1 16.67 26.05 36.72 40.79 27.76 2.67 22.57 16.27 20.83 22.51 2.00 26.56 27.76 10.01 15.33 3.50 0.00 0.00 4.80 11.06 0.00 5.39 4.35 72 ER5e ExonRegion 1 16.97 20.62 13.06 13.67 24.17 4.93 17.63 6.99 6.85 10.68 3.23 15.63 8.65 2.77 8.30 6.64 2.63 1.62 9.01 10.07 0.00 5.83 6.10 73 IG44 Intergenic 0 22.80 69.77 18.14 48.01 46.76 29.50 25.39 28.23 38.40 33.87 4.10 17.89 12.94 5.09 5.08 4.27 4.13 11.46 10.86 27.97 2.00 6.80 4.53 74 IG44_SR1 SilentIntergenicRegion 0 6.29 12.61 3.31 12.85 13.13 6.87 9.43 6.98 7.85 11.70 1.25 13.43 11.47 2.27 1.41 1.53 1.70 1.43 2.87 12.36 0.57 1.88 2.27 75 IG44_AR1 ActiveIntergenicRegion 0 24.16 74.48 19.36 50.91 49.53 31.37 26.71 29.98 40.92 35.70 4.33 18.26 13.06 5.32 5.38 4.49 4.33 12.29 11.52 29.26 2.12 7.20 4.72