Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM41A Gene 0 22.81 19.46 17.92 19.83 24.18 8.33 16.52 15.31 13.40 19.42 33.23 35.59 38.36 42.04 39.20 44.84 35.41 20.03 16.23 16.39 17.20 15.26 15.00 2 467061 Transcript 0 6.17 4.56 4.22 3.54 5.66 2.48 5.10 3.10 2.70 3.99 3.92 6.45 8.14 6.39 6.82 10.66 9.51 7.12 6.60 7.09 2.52 2.40 4.29 3 421852 Transcript 0 49.79 46.86 45.10 59.80 91.47 25.99 75.65 44.43 36.87 54.44 91.73 77.76 116.54 113.58 104.54 98.09 90.68 36.38 30.99 30.30 44.33 36.69 25.55 4 382227 Transcript 0 5.73 4.53 3.12 5.68 3.66 3.07 7.73 1.15 3.27 2.20 4.47 0.87 4.03 3.62 8.29 3.53 1.42 0.79 2.85 3.60 3.00 1.56 2.55 5 296254 Transcript 0 0.00 3.35 2.42 2.06 0.00 0.00 6.76 0.00 1.79 0.00 2.42 0.00 0.00 2.47 0.00 0.00 0.00 0.00 3.67 0.00 0.00 2.82 0.00 6 475480 Transcript 0 1.57 0.70 2.21 1.29 0.66 0.00 0.56 0.89 1.39 0.46 1.29 0.40 3.24 3.24 4.66 3.11 0.86 1.87 1.02 0.74 0.63 0.93 1.81 7 467520 Transcript 0 0.00 0.00 0.15 0.16 0.00 0.00 0.21 0.00 0.15 0.14 0.00 0.00 0.00 0.21 1.27 1.66 0.79 0.00 1.01 0.34 0.18 0.00 0.47 8 484062 Transcript 0 3.10 1.04 0.02 2.82 5.02 1.14 3.46 1.37 1.76 3.02 3.89 0.00 0.00 3.31 5.65 5.84 1.14 3.28 1.21 1.87 1.01 1.64 2.38 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.64 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 1 10.32 9.79 1.48 0.45 5.80 1.07 11.45 3.10 1.72 8.65 24.81 0.00 0.10 23.41 37.84 53.06 39.89 17.48 0.00 7.00 15.84 7.90 11.56 11 E1_Ac KnownBoundary 0 6.22 18.68 0.00 1.40 3.65 0.00 16.25 0.00 3.07 1.58 24.11 0.00 0.00 12.24 11.62 43.32 33.75 14.43 0.00 5.56 13.78 3.12 19.21 12 E1_Ad KnownBoundary 0 24.30 2.63 5.38 1.60 3.99 0.00 4.20 6.33 4.46 15.98 24.69 0.00 0.00 4.71 0.00 50.24 40.30 32.54 0.00 5.56 14.15 10.90 11.87 13 ER1c ExonRegion 1 24.34 16.27 6.13 1.36 12.04 1.83 17.21 6.05 3.71 17.78 42.52 0.00 4.69 44.66 50.77 101.05 75.92 29.56 0.00 12.77 28.65 16.67 20.56 14 ER1d ExonRegion 1 17.39 10.81 8.38 3.09 4.79 2.91 4.31 9.10 8.12 19.55 33.31 0.27 4.06 22.63 25.48 28.03 38.89 22.75 3.19 6.65 21.49 8.98 10.75 15 E1a_E3a KnownJunction 1 0.00 13.94 6.33 3.26 3.48 0.00 1.99 11.38 10.94 28.55 78.07 6.00 5.68 38.08 44.75 19.91 113.70 33.16 3.86 8.56 52.76 5.02 3.41 16 ER2a ExonRegion 0 0.00 0.00 0.29 0.32 0.00 0.00 0.42 0.00 0.29 0.27 0.00 0.00 0.00 0.42 2.55 3.31 1.58 0.00 2.02 0.68 0.35 0.00 0.93 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 1 3.20 12.00 21.02 15.67 7.89 3.82 8.14 14.13 12.08 32.81 51.76 5.88 7.13 72.78 62.90 95.47 64.73 67.24 13.69 15.81 39.68 17.44 29.82 19 E3_Da KnownBoundary 0 0.00 0.00 1.54 0.00 12.90 0.00 0.00 2.14 0.00 3.30 2.05 0.00 0.00 9.89 6.06 4.36 9.26 3.44 0.00 2.94 0.00 0.00 3.84 20 E3a_E3b KnownJunction 0 3.78 18.09 24.33 30.17 8.57 9.88 28.93 21.19 10.50 32.45 54.22 22.81 13.31 126.97 82.82 92.97 63.11 57.16 21.84 14.32 51.34 13.96 28.43 21 E3a_E4a KnownJunction 0 0.00 3.35 2.42 2.06 0.00 0.00 6.76 0.00 1.79 0.00 2.42 0.00 0.00 2.47 0.00 0.00 0.00 0.00 3.67 0.00 0.00 2.82 0.00 22 E3a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER3b ExonRegion 0 6.18 5.08 4.76 2.38 6.07 2.13 5.60 2.96 2.66 3.67 4.80 10.91 8.97 7.99 8.33 11.06 10.52 7.74 5.56 8.09 2.71 2.68 3.36 24 E3_Ab KnownBoundary 0 6.30 5.00 10.79 3.20 0.00 2.73 3.97 0.00 1.59 2.36 0.00 0.00 0.00 2.30 4.45 16.06 12.34 10.86 11.86 0.00 6.30 0.00 0.00 25 ER3c ExonRegion 0 14.23 21.01 30.75 33.32 11.32 5.25 18.61 25.99 17.35 48.75 85.69 40.71 54.34 144.98 84.30 141.16 100.13 47.40 28.05 27.12 59.20 38.51 39.76 26 E3_Db KnownBoundary 0 28.67 15.72 31.90 33.96 15.62 12.44 22.48 43.95 36.05 82.87 139.30 82.23 54.70 125.02 69.97 150.13 107.81 59.07 43.95 55.16 41.89 35.64 40.72 27 ER3d ExonRegion 0 62.04 21.96 31.55 28.53 41.15 16.45 24.49 33.47 34.87 61.92 121.43 63.89 104.00 134.63 68.38 135.51 135.74 53.06 24.02 41.23 57.80 34.41 29.76 28 E3_Dc KnownBoundary 0 3.11 6.58 1.51 2.06 4.33 7.84 0.00 0.00 0.00 5.72 0.00 0.00 12.66 0.00 6.30 0.00 3.65 8.08 0.00 8.82 3.15 0.00 0.00 29 E3c_E3c KnownJunction 0 97.13 36.18 38.73 52.64 66.55 9.71 20.71 33.11 37.47 55.87 97.87 100.98 199.18 166.58 75.41 111.42 105.66 58.57 50.64 22.50 55.48 42.25 57.71 30 ER3e ExonRegion 0 5.16 3.92 3.60 4.21 3.50 2.67 3.39 2.40 1.84 4.48 1.55 0.30 5.98 4.18 4.70 8.82 8.43 5.83 5.11 4.69 1.17 1.47 3.62 31 E3_Ac KnownBoundary 0 12.97 3.35 2.60 0.00 0.00 8.46 11.13 1.64 1.56 3.33 0.00 0.00 6.33 9.01 0.00 6.84 8.23 4.81 4.71 0.00 0.00 0.00 0.00 32 ER3f ExonRegion 0 60.04 84.11 49.79 66.29 57.64 23.69 60.74 57.16 56.20 81.73 153.40 148.14 242.11 233.07 110.14 226.46 165.93 79.28 54.61 47.52 74.88 57.48 62.48 33 E3_Dd KnownBoundary 0 2.82 0.00 2.45 6.79 3.74 0.00 0.00 4.39 1.36 2.79 4.90 6.30 13.47 2.47 6.30 19.05 8.98 1.78 4.05 3.26 0.00 2.57 0.00 34 E3d_E4a KnownJunction 1 10.37 29.01 28.59 53.77 162.82 37.25 161.68 52.04 42.19 57.75 106.61 88.08 228.72 150.10 82.45 97.58 119.78 28.64 36.24 18.22 55.72 32.09 18.95 35 E3d_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER3g ExonRegion 0 7.18 4.68 4.31 4.03 7.40 2.63 6.30 3.92 3.61 3.82 5.41 8.12 9.48 7.00 7.43 12.10 9.57 7.80 9.12 8.49 3.68 3.04 5.87 37 E3_De NovelBoundary 0 0.00 0.00 1.39 1.50 0.00 10.16 8.04 7.27 5.38 2.85 7.90 0.00 6.66 2.41 0.00 20.76 0.00 9.99 4.61 6.07 0.00 2.27 4.27 38 E4_Aa NovelBoundary 0 3.78 11.84 6.80 3.23 16.04 0.00 16.87 6.04 0.00 2.85 2.68 5.70 6.82 2.06 0.00 4.36 12.81 7.25 0.00 8.56 0.00 0.00 0.00 39 ER4a ExonRegion 0 59.19 56.48 42.36 47.09 90.74 27.12 57.89 48.69 40.01 56.67 108.91 150.62 195.80 139.70 113.50 133.40 109.32 58.30 53.28 43.24 55.82 54.16 50.13 40 E4_Da KnownBoundary 0 0.00 0.00 2.31 1.27 4.16 4.37 3.36 1.56 0.00 1.02 6.53 0.00 6.17 13.30 14.46 6.49 3.65 0.00 0.00 2.49 2.41 7.41 3.33 41 ER4b ExonRegion 0 81.72 68.38 63.92 80.79 75.24 28.84 48.95 48.67 42.53 58.51 103.95 111.98 79.39 128.72 128.09 128.17 98.80 47.20 43.94 44.44 50.33 47.75 40.48 42 E4_Ab KnownBoundary 0 57.49 79.79 80.78 64.63 114.94 37.82 41.56 54.30 41.90 59.36 86.07 114.79 81.98 113.01 135.61 94.85 56.66 37.02 64.85 50.37 67.71 34.11 30.39 43 ER4c ExonRegion 0 50.59 42.12 89.38 80.52 107.06 25.02 47.55 56.11 52.25 67.15 82.04 80.10 48.39 90.67 145.73 112.54 71.35 37.52 40.31 48.57 45.45 37.28 30.72 44 E4_Db KnownBoundary 0 52.90 39.99 97.22 102.15 120.54 50.54 56.44 61.94 41.03 59.93 75.86 49.37 72.40 85.06 144.01 122.70 72.93 48.79 32.57 37.65 28.66 75.19 43.79 45 E4b_E5a KnownJunction 0 7.48 0.00 0.00 9.26 15.53 5.79 7.99 0.00 2.78 3.25 2.68 0.00 0.00 7.59 8.90 0.00 0.00 4.93 3.67 0.00 0.00 0.00 3.41 46 ER4d ExonRegion 0 57.28 43.19 42.79 44.83 36.36 11.87 16.34 32.59 25.90 47.05 64.64 33.22 41.53 61.91 103.06 68.53 53.47 33.31 12.80 28.23 26.93 30.23 17.22 47 E4_Dc NovelBoundary 0 0.00 2.83 3.67 3.76 8.15 0.00 0.00 2.42 1.79 2.74 6.84 18.91 0.00 20.48 10.75 17.09 4.58 1.66 0.00 3.07 0.00 0.00 3.59 48 E5_Aa NovelBoundary 0 2.74 15.39 9.49 10.75 21.65 0.00 3.49 2.46 11.17 13.81 2.68 12.90 20.78 14.83 19.90 11.88 12.90 2.40 0.00 8.44 0.00 2.76 0.00 49 ER5a ExonRegion 0 3.94 2.03 0.14 3.73 5.35 1.02 4.41 0.96 1.10 5.10 2.87 0.00 0.00 6.99 4.75 5.99 1.24 2.36 1.90 2.25 2.20 2.05 1.26 50 E5_Da NovelBoundary 0 38.23 51.70 16.62 22.14 18.42 7.72 18.68 18.73 34.17 29.12 5.00 6.15 6.82 4.71 13.35 0.00 9.54 24.75 4.80 20.33 8.40 2.51 14.34 51 E5a_E6a KnownJunction 0 3.63 3.35 0.00 1.60 4.33 0.00 3.84 3.90 4.17 7.04 9.74 0.00 0.00 4.41 8.90 8.46 4.77 2.49 0.00 3.26 3.15 3.12 7.17 52 E6_Aa NovelBoundary 0 23.56 39.99 20.05 16.08 36.50 12.66 4.24 16.35 20.43 29.01 7.69 31.21 25.97 16.89 4.57 8.37 13.28 28.69 24.00 34.96 2.41 5.94 3.76 53 ER6a ExonRegion 0 2.65 0.64 0.00 2.33 0.98 0.00 2.29 3.38 1.72 2.35 3.16 0.00 0.00 0.86 1.27 6.63 0.83 3.87 1.69 2.37 0.69 1.41 2.45 54 E6_Da NovelBoundary 1 37.41 46.04 30.66 36.19 24.11 16.47 23.10 23.04 43.20 35.91 9.42 31.21 26.95 30.26 25.71 0.00 37.12 58.66 13.65 74.08 5.56 2.76 32.61 55 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 3.40 0.00 1.90 0.00 0.00 0.00 4.37 0.00 0.00 0.00 8.90 12.05 0.00 5.14 0.00 3.26 0.00 2.94 0.00 56 E7_Aa NovelBoundary 0 34.08 40.72 20.52 35.83 37.44 15.45 21.60 17.54 40.31 36.88 18.00 18.01 21.75 7.65 15.95 17.43 12.34 42.41 8.38 64.24 5.93 5.69 25.87 57 ER7a ExonRegion 0 0.92 0.22 0.00 0.00 0.53 0.00 0.32 0.00 0.78 0.37 0.51 0.00 0.00 0.00 1.17 1.92 0.00 0.86 0.00 0.10 0.00 0.31 0.00 58 E7_Da NovelBoundary 1 18.30 66.17 17.89 15.15 40.49 31.91 20.80 8.79 24.45 37.96 0.00 32.71 31.82 11.95 4.45 21.62 17.20 13.64 14.12 48.58 3.15 8.51 3.33 59 E8_Aa NovelBoundary 0 0.00 6.71 0.00 3.00 44.06 2.16 23.10 3.86 3.53 4.59 9.05 6.30 0.00 2.24 4.70 7.01 8.32 15.55 0.00 15.08 12.05 0.00 4.18 60 ER8a ExonRegion 0 3.44 2.21 4.78 2.13 1.45 0.00 1.44 2.78 3.92 1.85 1.99 0.09 12.27 10.94 15.56 11.10 0.00 2.99 1.73 2.31 1.20 3.39 4.62 61 E8_Da NovelBoundary 0 44.97 36.11 46.33 70.42 47.71 35.09 58.47 64.20 50.81 31.83 24.43 5.85 27.76 17.66 19.90 57.59 30.20 83.03 28.71 49.22 34.72 11.88 64.11 62 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E9_Aa NovelBoundary 0 7.56 15.06 13.22 27.64 7.30 19.99 11.08 14.25 35.73 37.45 19.85 42.16 12.50 14.13 22.99 8.03 8.98 128.38 13.37 56.63 25.95 3.06 11.18 64 ER9a ExonRegion 0 2.83 0.60 4.07 3.02 1.19 0.00 0.79 0.77 1.66 0.00 3.16 1.51 0.70 2.03 3.10 1.33 3.44 4.50 2.37 0.63 1.31 0.31 2.62 65 E9_Da NovelBoundary 0 16.82 0.00 2.69 7.29 21.48 0.00 1.94 9.00 5.38 2.47 12.58 6.30 32.47 4.59 13.35 20.42 4.77 0.00 0.00 14.38 0.00 5.14 18.35 66 Ix_AR3 ActiveIntronRegion 0 11.52 5.72 3.70 5.67 5.77 2.47 4.01 3.20 5.39 3.01 4.66 6.67 2.53 4.88 10.47 8.37 2.23 7.75 2.15 4.86 2.29 2.19 1.19 67 Ix_AR1 ActiveIntronRegion 0 8.47 6.10 3.51 7.45 5.35 0.00 0.00 0.00 4.28 7.11 1.68 4.33 0.00 4.76 11.02 7.53 0.00 9.24 0.00 11.21 0.00 2.08 5.87 68 E10_Aa NovelBoundary 0 10.89 0.00 2.37 10.82 8.57 2.90 10.86 7.43 7.12 1.21 4.74 6.30 26.30 0.00 4.45 4.36 4.77 3.36 9.41 5.82 2.97 0.00 0.00 69 ER10a ExonRegion 0 7.74 4.55 5.58 6.84 3.92 4.14 9.03 1.51 6.22 4.23 4.99 3.46 7.15 3.29 7.41 1.98 0.00 0.00 7.74 5.67 1.95 1.33 4.89 70 E10_Da NovelBoundary 0 0.00 17.50 0.00 4.66 4.33 0.00 8.66 0.00 2.78 0.00 0.00 0.00 20.45 0.00 0.00 0.00 0.00 7.71 0.00 9.40 2.84 0.00 0.00 71 E10a_E11a KnownJunction 0 6.15 6.12 3.02 8.86 0.00 5.68 16.61 1.93 4.72 2.71 9.90 0.00 6.33 5.47 14.34 4.27 0.00 0.00 0.00 3.26 6.05 2.88 4.35 72 E11_Aa NovelBoundary 0 25.78 11.91 1.83 2.93 12.14 4.66 11.26 0.00 3.21 12.65 0.00 12.60 6.82 0.00 0.00 0.00 0.00 13.76 4.24 6.52 0.00 2.63 3.84 73 ER11a ExonRegion 0 9.04 7.45 3.88 7.03 10.70 2.47 5.28 1.17 2.15 1.87 2.98 0.00 2.63 5.69 11.41 7.88 5.67 3.16 3.65 5.47 4.01 2.01 0.96