Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TBCCD1 Gene 0 24.00 27.90 31.37 31.85 39.44 29.96 27.90 24.42 29.66 32.44 45.80 55.61 53.39 70.06 50.83 56.32 61.26 31.51 22.04 33.14 35.08 33.33 36.46 2 413695 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 424280 Transcript 1 9.46 20.61 15.98 18.25 30.71 13.62 16.71 18.87 16.17 26.03 4.11 34.99 41.79 13.91 15.71 5.20 2.61 2.19 2.87 12.29 0.20 21.54 2.25 4 446782 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 338733 Transcript 1 35.29 25.76 8.81 11.03 30.39 20.75 21.90 4.45 8.82 15.61 30.11 0.13 0.00 16.95 18.82 38.49 37.43 21.54 8.82 12.83 26.23 10.52 25.93 6 430560 Transcript 0 3.19 0.00 1.48 2.86 0.00 0.00 3.36 0.00 0.00 0.00 2.37 0.00 0.00 7.42 0.00 3.85 0.00 0.00 0.00 3.26 0.00 0.00 0.00 7 479590 Transcript 0 3.10 2.38 2.25 2.18 6.01 3.05 11.04 7.99 7.30 5.00 5.77 11.69 15.59 9.56 5.75 4.65 10.25 5.46 2.49 5.82 2.39 5.70 2.87 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.10 0.30 0.00 0.01 0.01 0.09 0.00 0.00 0.04 0.54 0.59 0.09 0.02 0.00 0.00 0.25 0.00 0.00 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.27 0.00 0.00 0.00 0.00 2.16 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 3.15 0.00 0.00 10 ER1b ExonRegion 0 1.80 0.00 0.00 0.00 1.29 3.00 0.32 0.71 1.53 1.38 11.45 1.68 0.00 11.15 6.68 15.76 13.34 3.85 2.76 4.37 1.65 0.75 0.71 11 E1a_E3a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 1.73 1.79 1.56 5.37 0.00 0.00 39.20 13.35 19.99 4.21 8.21 8.47 3.26 3.15 3.12 0.00 12 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 20.28 17.71 7.87 8.11 15.53 12.09 12.79 2.37 3.95 11.48 22.63 0.25 0.00 14.01 22.43 34.18 19.88 15.51 8.04 13.95 25.39 15.17 26.50 14 E2a_E3a KnownJunction 0 50.31 33.81 9.76 13.95 45.25 29.41 31.00 6.53 13.69 19.74 37.59 0.00 0.00 19.90 15.20 42.81 54.98 27.57 9.60 11.70 27.06 5.88 25.35 15 E3_Ab NovelBoundary 0 21.86 11.51 18.30 4.66 16.21 14.99 14.09 11.62 17.53 12.33 20.11 44.11 6.66 23.19 17.80 79.64 30.39 18.24 13.37 5.62 14.76 9.12 6.83 16 ER3a ExonRegion 1 33.64 18.74 11.29 9.98 24.46 21.09 19.95 7.84 14.60 15.03 39.35 25.67 0.00 40.31 28.08 72.29 47.86 28.18 17.97 8.89 22.59 11.68 15.73 17 ER3b ExonRegion 0 9.17 23.30 20.11 27.32 27.89 24.71 23.67 20.13 23.42 34.46 59.33 24.56 27.39 81.12 49.70 60.59 74.78 31.57 24.95 37.51 55.72 32.09 38.63 18 E3a_E4a KnownJunction 0 29.71 58.61 52.90 43.68 39.90 30.15 31.27 29.08 42.91 50.63 76.18 75.17 84.25 102.95 81.71 69.38 115.01 32.75 37.18 56.31 59.62 59.70 61.72 19 E3a_E4b KnownJunction 0 3.19 0.00 1.48 2.86 0.00 0.00 3.36 0.00 0.00 0.00 2.37 0.00 0.00 7.42 0.00 3.85 0.00 0.00 0.00 3.26 0.00 0.00 0.00 20 ER4a ExonRegion 0 18.96 40.34 41.44 41.61 25.17 35.70 26.99 36.93 52.23 51.42 67.61 78.20 100.31 104.11 59.80 84.01 114.79 51.10 29.64 47.59 68.94 62.59 59.69 21 E4_Ab KnownBoundary 0 16.52 18.22 44.50 54.77 30.98 36.12 32.24 44.89 62.67 60.84 67.81 66.62 102.10 115.78 55.38 81.86 93.22 64.54 30.02 55.74 67.03 69.62 50.79 22 ER4b ExonRegion 0 32.70 29.99 35.17 50.90 32.63 32.31 31.71 32.16 47.40 51.73 106.58 91.53 93.41 123.46 66.67 96.58 134.13 61.53 35.96 54.30 52.04 69.42 48.47 23 E4a_E5a KnownJunction 0 42.23 57.36 43.70 42.32 35.48 48.21 27.38 31.79 56.10 53.08 79.55 111.49 138.46 110.13 38.07 102.37 125.39 38.55 40.57 66.92 33.30 53.76 55.57 24 ER5a ExonRegion 0 22.83 41.43 43.26 53.23 44.09 44.86 46.24 37.55 50.10 51.11 76.70 115.01 88.93 114.78 64.40 100.57 120.94 49.40 32.59 48.33 48.42 62.96 53.11 25 E5_Da KnownBoundary 0 38.08 34.93 37.23 50.71 56.88 21.12 27.16 41.85 33.42 59.42 72.81 122.59 89.93 110.25 112.62 123.04 111.83 53.23 38.21 35.03 68.20 72.68 102.09 26 ER5b ExonRegion 0 21.68 41.75 48.79 41.13 42.29 41.37 40.01 31.67 46.74 57.09 86.63 120.75 77.17 120.71 70.85 90.07 112.29 55.37 41.00 50.12 63.27 59.70 62.11 27 E5_Db NovelBoundary 0 0.00 6.38 3.58 6.56 14.35 0.00 11.66 0.00 1.79 2.87 13.79 6.30 6.82 20.54 14.96 34.86 19.07 6.51 0.00 8.82 0.00 2.63 11.95 28 E5b_E6a KnownJunction 0 10.08 51.70 35.95 29.50 54.50 61.16 24.55 38.49 45.08 51.15 71.70 103.38 101.62 116.61 46.97 58.45 129.13 49.41 47.44 28.70 66.35 52.48 73.50 29 I5 Intron 0 6.17 5.16 6.12 8.67 10.41 2.58 7.80 1.95 3.48 4.80 4.60 11.93 29.99 8.87 6.84 6.10 6.42 3.98 2.07 7.59 4.41 4.39 6.35 30 I5_AR1 ActiveIntronRegion 0 3.74 6.87 7.33 11.44 10.49 3.68 9.30 1.89 3.14 6.06 6.21 14.35 32.40 7.27 5.93 6.77 3.00 3.62 2.06 5.62 2.73 8.17 6.30 31 I5_AR2 ActiveIntronRegion 1 5.49 9.65 8.20 8.80 15.53 3.10 11.23 1.14 3.30 5.46 5.76 14.94 49.80 11.11 10.53 5.65 9.68 9.25 4.92 5.71 12.20 2.41 8.63 32 I5_SR1 SilentIntronRegion 0 8.18 2.31 4.48 6.59 8.56 1.59 5.47 2.28 3.83 3.63 2.97 9.03 21.05 9.23 6.22 5.81 7.73 2.31 1.01 9.76 2.77 2.37 5.59 33 E6_Aa NovelBoundary 1 13.85 9.21 17.80 10.29 30.90 16.30 25.22 2.55 13.51 10.83 0.00 32.86 33.11 7.06 18.17 12.22 13.84 13.14 11.58 7.86 8.90 3.06 7.51 34 ER6a ExonRegion 0 28.18 43.87 65.73 55.62 65.03 51.55 51.20 47.18 56.44 66.94 97.11 103.54 118.86 155.09 85.75 134.32 139.82 74.29 56.40 75.06 85.25 63.04 98.61 35 E6_Da NovelBoundary 0 0.00 0.00 5.14 0.00 21.65 0.00 1.77 0.00 3.12 0.00 2.26 0.00 13.31 5.12 4.45 4.36 13.74 5.26 4.80 11.76 11.92 3.06 4.10 36 E6a_E7a KnownJunction 0 14.15 60.98 84.18 95.93 82.94 91.14 66.99 81.20 79.80 89.45 130.61 69.92 79.70 164.52 88.88 147.14 167.09 82.99 65.51 90.00 99.03 52.60 106.28 37 I6 Intron 0 0.82 0.79 4.94 1.57 2.07 0.00 2.05 1.00 0.00 0.66 2.99 5.51 14.71 1.99 3.63 12.63 7.65 4.26 3.69 2.47 0.85 2.41 2.27 38 I6_SR1 SilentIntronRegion 0 0.83 0.80 5.01 1.59 2.10 0.00 2.08 1.01 0.00 0.67 3.03 5.59 14.94 2.02 3.68 12.83 7.77 4.32 3.75 2.50 0.86 2.45 2.30 39 E7_Aa NovelBoundary 0 0.00 0.00 18.83 7.86 0.00 8.01 6.18 0.00 4.46 1.67 4.26 18.31 32.47 6.95 11.74 11.96 4.77 2.57 8.66 5.31 9.02 0.00 4.18 40 ER7a ExonRegion 0 47.63 50.04 77.51 75.50 73.05 65.48 54.37 52.23 66.65 67.23 99.51 95.89 110.56 134.13 99.10 120.17 117.71 83.28 49.45 72.87 83.30 65.84 82.40 41 E7_Ab KnownBoundary 0 69.35 50.25 64.75 69.29 86.76 77.91 88.94 38.94 56.31 52.89 62.70 79.38 81.33 116.66 88.14 71.09 90.23 51.11 50.92 85.59 35.65 45.13 66.58 42 ER7b ExonRegion 0 58.31 53.82 63.74 57.77 117.41 74.92 56.72 39.05 48.91 43.12 69.84 86.16 94.73 117.03 82.19 80.17 94.50 38.25 26.85 52.31 38.35 45.65 58.24 43 E7_Da NovelBoundary 0 0.00 0.00 3.25 10.59 12.99 0.00 5.74 2.51 0.00 9.29 8.05 12.45 33.28 11.89 4.45 8.63 18.98 2.11 4.61 9.08 0.00 2.94 3.24 44 E7a_E8a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 8.57 7.64 5.09 1.29 2.68 0.00 0.00 6.95 0.00 0.00 4.77 5.14 0.00 0.00 0.00 3.06 0.00 45 E7a_E9a KnownJunction 1 36.97 18.48 60.23 46.28 76.32 17.60 15.10 38.49 51.21 32.40 38.43 37.51 60.06 84.82 51.05 40.25 95.93 19.86 25.88 41.87 39.66 22.90 33.55 46 I7 Intron 0 2.23 1.07 0.64 4.63 5.63 4.82 5.57 2.26 2.26 3.29 4.40 13.93 18.76 12.47 6.76 6.77 8.10 3.39 1.67 8.58 1.54 6.94 5.66 47 I7_SR1 SilentIntronRegion 0 2.23 1.07 0.64 4.64 5.64 4.84 5.59 2.26 2.27 3.31 4.42 13.97 18.79 12.52 6.78 6.79 8.13 3.40 1.68 8.61 1.55 6.96 5.68 48 E8_Aa NovelBoundary 1 13.11 0.00 6.33 14.68 24.79 9.43 14.40 20.87 8.91 4.46 15.69 0.00 47.56 12.13 10.38 8.72 22.35 3.81 0.00 12.72 5.81 11.57 7.85 49 ER8a ExonRegion 1 6.20 4.77 2.66 4.35 12.03 6.11 13.52 8.34 9.51 8.71 8.85 23.39 31.18 12.17 11.50 9.30 15.73 5.78 4.98 11.64 4.77 8.34 5.75 50 E8_Da NovelBoundary 1 38.75 6.12 1.24 11.29 38.03 10.11 18.20 8.46 17.97 18.70 18.85 37.51 101.45 15.77 16.94 34.18 43.20 4.23 8.09 20.58 0.00 22.23 12.89 51 I8 Intron 0 8.91 5.09 5.61 8.55 15.84 4.38 9.95 7.91 8.59 5.25 12.99 26.45 49.12 14.36 13.09 14.89 15.03 5.13 5.44 11.63 4.26 8.78 8.02 52 I8_SR1 SilentIntronRegion 0 8.95 5.12 5.64 8.59 15.91 4.40 9.99 7.95 8.63 5.28 13.05 26.57 49.34 14.42 13.15 14.95 15.10 5.15 5.46 11.68 4.28 8.82 8.06 53 E9_Aa NovelBoundary 1 10.74 0.00 10.88 9.99 7.30 5.68 21.90 11.79 11.95 0.00 17.85 24.61 62.66 18.72 26.08 0.00 8.32 8.58 0.00 9.20 20.51 5.39 8.62 54 ER9a ExonRegion 0 78.07 51.47 70.96 58.01 98.61 54.19 42.85 49.63 60.41 49.64 66.88 127.88 117.00 121.32 99.89 93.99 94.06 45.56 32.40 46.08 53.27 46.36 63.73 55 E9a_E10a KnownJunction 0 31.49 38.68 45.06 29.90 70.80 49.23 44.78 21.07 31.57 21.38 44.54 105.63 87.98 99.71 81.46 94.85 76.02 35.32 4.71 33.56 35.46 24.43 39.69 56 ER10a ExonRegion 0 25.28 25.72 20.39 23.03 27.66 19.95 20.63 17.73 17.11 18.42 16.74 37.49 25.95 43.29 52.85 30.02 24.39 17.22 13.93 19.54 16.95 20.04 20.55 57 E10_Da KnownBoundary 0 3.56 10.59 4.76 10.82 3.23 0.00 17.05 5.50 9.64 7.39 0.00 0.00 6.82 4.83 25.84 11.11 8.70 1.62 4.71 14.19 0.00 17.45 0.00 58 E10_Db KnownBoundary 0 12.89 20.85 9.52 14.15 23.01 6.76 5.39 5.01 9.29 15.96 9.63 6.30 12.50 0.00 9.89 4.02 4.77 0.00 8.85 11.19 0.00 17.08 0.00 59 ER10b ExonRegion 1 10.58 28.47 22.06 27.26 33.45 14.67 25.16 15.56 22.85 28.10 11.60 17.32 37.52 19.49 53.67 14.86 9.90 5.54 12.74 26.60 2.20 37.50 0.00 60 ER10c ExonRegion 1 9.46 20.61 15.98 18.25 30.71 13.62 16.71 18.87 16.17 26.03 4.11 34.99 41.79 13.91 15.71 5.20 2.61 2.19 2.87 12.29 0.20 21.54 2.25