Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KRT8P12 Gene 0 21.88 14.84 20.88 16.95 9.73 11.79 5.64 7.38 4.91 19.46 7.80 16.37 7.38 20.37 20.49 11.03 20.48 13.83 13.89 16.01 15.15 11.84 11.49 2 468527 Transcript 0 7.15 5.23 3.57 4.92 2.44 4.13 4.29 0.91 1.39 6.05 1.31 8.54 4.85 5.65 2.81 2.61 3.47 1.62 3.63 4.21 2.83 6.02 3.37 3 427889 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 472924 Transcript 0 3.17 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 1.62 0.00 0.00 0.00 2.77 0.00 0.00 0.00 2.08 1.47 5 ER1a ExonRegion 0 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.03 0.02 0.58 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 I1 Intron 0 2.95 1.70 2.54 2.55 0.75 8.43 1.84 1.08 1.54 7.38 1.89 2.84 0.54 11.49 7.11 7.04 12.88 9.72 4.88 6.52 7.68 4.94 4.91 8 I1_AR1 ActiveIntronRegion 0 3.68 2.01 3.98 3.64 0.82 13.34 1.77 1.55 2.34 11.38 2.97 5.00 0.95 17.90 9.18 9.96 19.44 14.94 6.77 10.58 9.76 7.67 6.81 9 E2_Aa NovelBoundary 0 0.00 0.00 6.95 9.12 4.33 0.00 4.24 2.26 1.22 16.98 0.00 0.00 0.00 32.02 8.90 16.66 23.00 29.14 14.21 19.62 10.81 20.39 20.74 10 ER2a ExonRegion 0 1.76 4.94 0.71 3.47 1.86 5.76 3.67 0.87 0.77 6.68 2.01 2.77 0.00 11.82 5.13 8.25 7.01 2.63 6.63 8.86 7.65 5.95 3.18 11 E2_Da NovelBoundary 0 13.04 30.92 0.00 3.93 6.96 30.89 4.15 4.56 1.77 14.10 2.58 0.00 0.00 23.96 19.16 3.50 43.10 17.62 17.69 16.81 12.05 8.33 12.55 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I2 Intron 0 16.00 18.44 14.30 13.17 10.12 14.08 8.99 5.17 5.68 18.92 6.71 46.95 31.56 23.92 12.84 10.89 26.62 6.71 13.15 16.01 6.80 22.35 12.80 14 I2_AR1 ActiveIntronRegion 0 14.10 17.22 12.28 11.76 10.55 14.21 8.13 5.18 5.36 19.40 6.18 46.95 28.61 24.01 13.24 11.10 26.66 7.74 14.61 17.26 7.75 21.00 13.89 15 I2_AR2 ActiveIntronRegion 0 42.54 14.64 26.71 23.31 13.38 27.69 10.72 8.12 10.00 28.10 12.95 77.06 66.60 24.20 29.59 18.13 36.31 3.70 12.42 25.53 4.41 45.84 11.45 16 I2_SR1 SilentIntronRegion 0 22.49 24.57 22.63 19.04 8.48 13.08 12.89 5.17 6.97 17.18 8.88 46.81 43.24 24.26 10.40 10.02 26.77 2.75 7.22 10.67 3.21 27.17 8.79 17 I2_AR3 ActiveIntronRegion 1 5.64 2.54 6.23 3.63 0.00 1.83 0.44 0.00 1.13 1.34 0.16 18.40 6.64 8.80 6.77 1.73 4.95 0.00 5.04 2.48 0.00 9.38 0.00 18 E3_Aa NovelBoundary 0 16.60 27.23 26.05 21.44 39.22 17.72 16.47 10.97 11.89 26.38 14.79 31.66 54.22 24.66 26.95 0.00 8.60 8.33 4.80 6.26 0.00 33.92 11.35 19 ER3a ExonRegion 1 34.00 21.20 17.16 21.14 10.36 14.91 17.76 3.67 6.16 23.58 4.54 39.94 24.24 16.42 8.87 4.82 10.36 5.47 11.51 12.15 5.90 24.13 13.69 20 E3_Ab KnownBoundary 1 35.04 38.02 31.02 25.44 10.61 37.93 24.33 11.99 7.06 26.43 16.69 94.98 44.96 30.37 13.35 22.47 15.33 12.85 12.42 11.70 3.15 24.86 23.73 21 ER3b ExonRegion 1 33.20 24.02 27.37 19.94 16.57 15.66 7.83 10.49 5.67 25.48 11.36 52.49 18.94 21.53 16.75 13.71 26.11 15.31 12.88 11.11 16.72 18.94 13.42 22 E3_Ac KnownBoundary 0 25.49 26.84 47.40 32.60 4.07 11.92 25.97 24.89 29.08 39.73 12.42 23.41 32.63 16.30 8.90 24.10 38.15 58.08 16.47 18.15 31.07 10.53 11.44 23 ER3c ExonRegion 0 26.90 18.88 17.04 19.31 9.08 16.87 5.23 8.23 4.71 17.85 5.70 18.10 5.19 19.71 18.58 12.09 28.06 14.30 11.16 17.32 16.69 12.93 9.99 24 E3_Da KnownBoundary 0 37.41 21.77 23.77 35.46 40.07 48.38 10.11 23.37 23.00 30.78 12.69 6.30 0.00 25.13 16.19 20.25 25.25 21.89 45.84 42.70 25.70 24.43 24.93 25 ER3d ExonRegion 0 23.69 15.29 28.18 20.21 11.59 12.10 5.29 9.28 6.19 23.87 10.52 11.56 6.48 25.85 29.14 13.40 23.89 18.56 18.87 20.90 19.24 11.79 14.69 26 ER3e ExonRegion 0 3.17 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 1.62 0.00 0.00 0.00 2.77 0.00 0.00 0.00 2.08 1.47 27 IG47_AR1 ActiveIntergenicRegion 0 4.05 0.97 7.43 6.81 0.64 3.51 0.32 3.70 3.53 6.55 3.23 0.85 0.00 8.94 5.88 2.83 7.11 3.30 2.29 6.11 12.66 3.49 2.81