Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AC083906.1 Gene 0 10.23 6.50 21.84 10.52 15.43 9.35 9.72 25.07 9.86 16.49 5.86 4.72 11.21 5.64 7.10 17.85 11.28 10.97 21.46 7.06 51.72 13.44 14.07 2 431227 Transcript 0 0.24 0.00 1.40 0.36 0.89 0.72 1.25 2.30 0.93 1.06 1.60 1.44 0.26 1.06 0.48 3.01 1.65 1.23 1.42 1.06 10.19 0.67 2.36 3 304751 Transcript 0 2.95 1.34 5.05 2.16 4.29 2.42 1.54 3.86 4.86 4.08 1.65 1.28 3.34 3.50 0.65 8.29 2.74 2.37 3.51 3.10 17.74 2.92 3.95 4 IG8_SR8 SilentIntergenicRegion 0 9.75 3.94 10.24 6.50 2.51 4.10 8.19 5.92 2.86 4.65 9.42 2.01 1.81 0.04 0.00 13.47 3.01 1.38 0.60 1.71 2.89 1.06 2.73 5 IG8_AR12 ActiveIntergenicRegion 0 7.58 1.29 7.80 10.53 3.53 14.11 18.11 4.75 2.05 3.68 3.67 23.62 23.34 0.00 1.15 18.95 13.65 4.62 0.00 2.30 3.61 1.11 4.44 6 IG8_AR1 ActiveIntergenicRegion 0 5.96 2.03 1.28 4.93 26.43 7.52 17.17 0.91 6.31 1.17 0.68 0.00 1.36 0.00 0.00 9.41 0.00 0.23 0.92 1.89 1.55 0.73 6.20 7 ER1a ExonRegion 0 0.00 0.00 1.20 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.11 0.00 0.26 8 E1_Ab KnownBoundary 0 3.04 5.92 16.88 4.93 0.00 0.00 3.80 2.22 6.02 6.31 4.21 0.00 0.00 12.36 0.00 14.10 17.11 8.12 0.00 5.62 20.39 6.00 8.37 9 ER1b ExonRegion 0 0.00 0.04 1.42 0.00 0.00 0.85 0.71 0.00 0.00 0.00 0.00 0.00 0.05 0.72 3.30 0.00 0.00 1.50 5.23 0.04 1.81 0.09 3.15 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 I1 Intron 0 3.28 3.37 11.33 3.36 5.26 6.45 6.16 10.39 11.05 9.55 5.20 3.32 3.37 2.91 1.48 15.99 11.95 15.40 15.49 6.38 68.83 7.76 17.62 13 I1_SR1 SilentIntronRegion 0 3.29 3.37 11.36 3.37 5.27 6.46 6.18 10.41 11.07 9.56 5.21 3.33 3.37 2.91 1.49 16.02 11.98 15.43 15.52 6.40 68.97 7.78 17.66 14 E2_Aa NovelBoundary 0 14.45 15.72 11.47 16.38 15.11 7.84 16.78 14.75 11.75 4.51 7.79 18.91 6.82 2.41 0.00 33.67 8.60 14.76 39.44 8.25 40.77 11.21 46.78 15 E2_Ab NovelBoundary 0 3.33 3.35 10.41 0.00 0.00 2.61 4.50 22.59 5.06 2.71 7.74 6.75 13.47 4.59 0.00 27.94 18.70 5.55 18.45 15.28 46.83 4.90 11.01 16 ER2a ExonRegion 0 1.69 8.13 2.45 0.00 0.00 2.20 0.79 0.00 0.00 0.00 0.58 0.00 4.69 4.55 2.03 11.59 3.30 2.59 4.46 6.81 14.10 8.33 5.29 17 ER2b ExonRegion 0 3.21 6.99 2.45 0.04 2.20 7.19 1.28 0.00 0.04 0.07 1.81 6.49 19.59 3.61 5.43 15.72 2.18 6.91 9.50 7.76 24.03 8.94 3.93 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I2 Intron 0 4.73 3.90 12.07 4.47 9.75 6.22 8.31 15.51 8.23 9.57 5.16 8.54 13.73 5.54 3.98 20.90 13.22 10.61 16.10 7.14 60.47 9.39 16.21 20 I2_SR1 SilentIntronRegion 0 4.74 3.90 12.09 4.47 9.77 6.23 8.32 15.53 8.25 9.58 5.17 8.55 13.75 5.55 3.99 20.93 13.23 10.62 16.12 7.15 60.56 9.41 16.23 21 E3_Aa NovelBoundary 0 6.89 6.12 17.21 3.46 11.63 8.46 14.49 24.48 9.61 7.66 14.16 6.30 20.13 9.89 12.11 20.34 20.85 37.31 28.14 3.07 121.58 20.15 33.55 22 ER3a ExonRegion 0 0.00 1.31 1.24 1.28 5.18 1.18 4.88 0.00 2.27 3.22 2.25 6.80 2.49 8.35 3.97 16.82 6.39 7.79 10.20 2.61 38.52 5.27 12.86 23 E3_Da NovelBoundary 0 0.00 0.00 4.52 0.00 0.00 0.00 5.83 6.90 3.12 4.38 2.32 0.00 7.95 0.00 0.00 16.83 4.58 7.67 3.58 0.00 23.97 2.27 19.80 24 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E3_Db NovelBoundary 0 0.00 0.00 17.71 10.92 3.82 14.65 12.06 23.74 2.92 8.03 0.00 0.00 14.93 0.00 0.00 0.00 8.23 17.37 12.80 0.00 26.87 2.88 15.19 26 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3b ExonRegion 0 0.00 0.00 1.84 0.00 1.34 0.00 0.00 0.00 2.47 1.15 0.00 4.33 0.00 0.00 0.00 2.97 0.00 1.85 3.19 0.00 6.61 2.08 5.87 28 I3 Intron 0 4.85 2.41 14.58 4.98 7.41 4.78 6.18 19.76 9.75 10.41 6.72 7.07 15.75 6.69 3.64 15.28 12.01 13.00 16.37 7.07 72.63 13.01 16.02 29 I3_SR1 SilentIntronRegion 0 3.64 0.39 2.80 0.63 2.81 2.05 2.46 4.66 3.11 1.85 2.59 3.61 3.91 1.96 2.23 5.90 1.09 0.35 10.40 1.49 28.07 6.42 6.46 30 I3_AR1 ActiveIntronRegion 0 8.89 2.44 20.10 4.91 4.01 1.83 10.99 20.74 12.35 9.06 9.66 8.66 11.26 6.33 5.80 16.64 12.87 7.02 20.07 12.13 84.62 22.29 24.96 31 I3_AR2 ActiveIntronRegion 0 2.53 2.71 17.97 5.94 0.74 0.97 3.79 19.25 8.13 9.72 2.63 4.33 7.82 4.29 2.01 6.36 16.69 9.24 6.19 9.22 57.36 9.49 9.46 32 I3_AR3 ActiveIntronRegion 0 5.07 2.99 18.39 6.55 10.11 5.32 7.75 24.16 13.46 13.54 9.10 8.43 22.37 9.16 3.99 17.67 16.10 16.68 16.71 8.70 91.82 16.48 17.55 33 E4_Aa NovelBoundary 0 3.70 2.63 5.44 9.82 12.14 0.00 0.00 23.99 4.40 12.28 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 8.56 0.00 26.44 3.12 0.00 34 ER4a ExonRegion 0 3.15 2.03 11.06 3.02 6.82 7.21 7.01 3.86 8.90 4.10 4.15 5.35 13.15 5.13 3.67 21.88 14.85 6.45 7.06 3.23 53.86 7.72 12.90 35 E4a_E5b KnownJunction 0 13.48 0.00 1.57 1.60 15.62 7.55 2.21 6.78 9.32 6.12 4.63 0.00 6.33 14.54 0.00 20.42 3.74 0.00 8.56 8.82 46.64 3.12 3.93 36 E5a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E5_Ac NovelBoundary 0 3.48 9.93 0.00 5.26 3.99 31.52 10.91 3.74 5.64 16.12 2.16 0.00 6.82 6.77 16.44 11.88 12.06 19.48 12.14 6.46 45.16 3.00 15.02 38 ER5a ExonRegion 0 1.41 0.00 0.82 1.36 2.68 1.83 0.88 0.00 1.65 1.53 1.29 0.00 1.56 3.79 0.00 4.95 0.00 0.00 2.12 2.13 11.02 0.69 0.98 39 E5b_E5d KnownJunction 0 0.00 0.00 20.93 6.06 0.00 0.00 0.00 14.50 14.03 9.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 0.00 0.00 0.00 0.00 40 ER5b ExonRegion 0 4.23 0.00 1.45 1.98 8.03 5.17 1.93 0.79 5.17 3.86 4.22 0.00 2.98 9.74 0.00 16.48 0.00 0.00 5.50 5.22 28.25 2.08 2.94 41 E5_Ad NovelBoundary 0 3.78 11.31 101.59 89.47 28.44 11.07 24.60 98.50 63.83 62.78 17.90 11.70 6.17 5.06 19.41 32.64 43.85 46.88 20.80 15.53 89.95 32.15 39.10 42 ER5c ExonRegion 0 4.23 0.00 1.23 1.36 4.82 2.57 1.85 2.07 4.94 3.44 2.71 0.00 0.00 7.15 0.00 13.08 0.66 0.00 3.19 3.40 19.83 2.50 1.76 43 ER5d ExonRegion 0 2.93 0.00 3.68 1.36 2.47 2.96 5.50 7.58 6.56 4.50 5.65 5.33 0.00 6.37 2.68 17.15 7.62 3.70 5.39 2.78 30.34 3.85 5.20 44 ER5e ExonRegion 0 0.00 0.00 6.37 0.82 2.68 2.20 6.62 13.83 3.95 4.82 5.80 8.66 0.00 2.60 2.90 13.08 9.90 7.39 6.37 4.26 40.99 3.33 12.92 45 ER5f ExonRegion 0 8.90 2.14 15.73 4.93 7.14 7.52 6.82 23.65 7.53 8.71 10.40 7.41 7.83 7.35 15.82 15.96 18.21 11.77 17.54 11.98 68.45 15.64 20.31 46 E5_Dc NovelBoundary 0 7.33 14.80 21.50 13.92 15.87 12.38 23.63 20.17 11.05 17.54 14.79 12.60 0.00 5.12 26.58 58.28 12.72 12.93 34.64 14.83 109.78 5.20 31.24 47 E5c_E6a KnownJunction 0 0.00 0.00 9.05 0.00 7.81 0.00 5.96 18.81 8.13 1.02 5.11 6.30 0.00 2.41 0.00 14.70 11.97 0.00 0.00 0.00 63.63 5.57 8.45 48 I5 Intron 0 2.72 3.26 13.47 13.68 3.43 5.88 3.40 7.44 8.27 2.19 2.48 2.29 2.48 6.50 6.19 10.49 6.35 15.01 15.33 9.55 28.25 6.01 8.48 49 I5_SR1 SilentIntronRegion 0 2.75 3.30 13.64 13.85 3.48 5.96 3.44 7.53 8.37 2.22 2.51 2.32 2.45 6.58 6.26 10.62 6.43 15.21 15.52 9.68 28.58 6.08 8.59 50 E6_Aa NovelBoundary 0 7.19 6.71 24.30 48.48 4.24 0.00 12.63 24.27 18.11 23.29 2.58 6.15 0.00 7.65 0.00 15.64 8.51 46.30 8.66 3.26 35.71 0.00 7.00 51 ER6a ExonRegion 0 6.94 3.51 12.60 4.55 11.81 4.57 6.70 18.93 5.03 7.50 8.69 3.03 5.59 5.61 4.81 19.92 18.17 4.04 17.09 5.70 84.54 9.31 18.55 52 E6_Da NovelBoundary 0 2.74 8.88 29.36 2.80 3.99 0.00 3.75 15.85 2.40 21.33 2.68 5.40 0.00 9.89 14.59 31.19 22.07 24.71 27.48 9.27 62.27 5.45 4.35 53 E6a_E7a KnownJunction 0 0.00 0.00 2.78 5.03 4.33 0.00 4.50 6.33 4.48 0.00 2.42 0.00 6.82 0.00 0.00 7.18 0.00 0.00 0.00 0.00 44.29 0.00 0.00 54 I6 Intron 0 5.74 7.52 20.27 7.01 10.56 4.52 9.39 10.80 2.72 13.17 4.53 4.85 4.68 2.80 5.21 16.68 13.63 12.23 12.77 6.04 47.55 4.24 15.94 55 I6_SR1 SilentIntronRegion 0 7.23 1.60 9.16 3.25 2.81 0.99 4.74 6.17 2.62 6.19 3.90 3.01 5.15 2.32 2.74 14.26 11.54 4.65 5.04 4.75 44.77 0.95 9.91 56 I6_AR1 ActiveIntronRegion 0 5.60 9.59 25.94 8.73 14.01 6.11 11.69 13.16 3.03 16.47 4.88 5.95 4.84 3.09 6.46 18.96 15.67 15.25 16.39 6.80 52.35 5.64 19.00 57 I6_SR2 SilentIntronRegion 0 3.61 10.53 1.41 3.69 3.54 0.92 3.35 4.58 0.00 6.00 4.72 0.00 2.35 2.44 1.71 3.15 0.29 11.20 4.31 4.44 14.45 2.14 9.24 58 ER7a ExonRegion 0 10.62 2.68 10.93 5.41 13.63 12.48 6.90 20.95 7.25 13.63 7.60 4.85 11.07 12.48 5.34 22.37 9.57 13.00 16.05 6.58 83.14 13.60 16.78 59 E7_Da NovelBoundary 0 0.00 3.16 7.75 1.30 3.57 9.77 0.00 2.34 3.24 1.67 2.42 12.30 0.00 2.12 0.00 7.18 16.83 4.35 7.62 0.00 33.79 8.27 11.18 60 E7a_E8a KnownJunction 0 19.71 2.43 11.74 3.56 45.42 11.07 6.01 34.46 18.34 6.12 9.58 0.00 0.00 2.24 0.00 8.46 4.21 4.89 0.00 9.20 60.85 8.88 11.78 61 I7 Intron 0 5.40 3.78 7.45 2.15 5.46 1.40 2.17 3.47 0.60 2.74 1.27 3.40 4.96 1.14 1.48 9.96 5.77 3.75 8.12 2.71 14.29 2.20 5.67 62 I7_SR1 SilentIntronRegion 0 5.40 3.78 7.46 2.15 5.47 1.40 2.17 3.48 0.60 2.74 1.27 3.41 4.97 1.14 1.48 9.98 5.78 3.75 8.13 2.72 14.31 2.20 5.67 63 E8_Aa NovelBoundary 0 20.30 24.14 24.48 9.22 14.18 8.01 3.89 6.41 4.48 2.69 0.00 6.15 0.00 4.65 0.00 15.89 8.98 8.21 0.00 0.00 18.10 5.51 11.69 64 ER8a ExonRegion 0 14.29 9.70 32.41 15.81 21.21 12.64 13.66 36.02 13.98 24.00 6.36 5.49 14.55 5.92 9.09 20.40 12.55 14.61 29.54 8.47 52.34 18.04 15.56 65 E8_Da KnownBoundary 0 25.26 34.07 94.20 102.88 34.63 52.70 41.56 122.11 64.32 90.28 14.95 44.56 47.07 39.79 65.02 35.46 48.25 51.03 71.06 92.36 142.95 66.99 54.97 66 ER8b ExonRegion 0 3.99 1.90 6.34 7.39 10.00 2.30 2.01 7.52 4.11 11.95 2.79 1.81 5.87 0.13 0.18 4.69 2.07 5.36 5.18 5.65 18.63 2.53 5.77