Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CEP63 Gene 0 38.59 55.59 39.57 40.82 40.28 28.08 31.85 29.15 19.60 40.74 43.71 67.11 65.55 45.92 39.75 41.24 37.91 40.66 28.56 35.55 12.82 22.65 19.29 2 332047 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 354446 Transcript 0 4.92 4.98 5.31 6.18 2.74 1.02 3.21 4.52 2.26 6.13 1.34 1.52 2.85 6.13 7.35 1.26 3.25 2.79 0.21 3.26 1.45 1.09 1.27 4 337090 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 383229 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 438820 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 413794 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 427599 Transcript 0 2.82 10.17 7.35 4.54 21.41 11.00 15.89 5.19 3.71 8.79 17.40 4.33 6.25 16.78 8.70 10.90 11.00 8.01 2.12 13.48 5.14 5.56 10.77 9 ER1a ExonRegion 1 12.45 15.23 19.12 5.79 16.10 9.22 14.99 10.75 8.56 23.12 49.33 8.47 4.47 34.67 32.17 36.25 43.42 35.52 22.79 38.34 33.18 27.32 48.15 10 E1a_E3b KnownJunction 0 0.00 11.05 9.25 6.26 78.86 32.88 48.40 10.60 5.99 24.79 18.37 11.70 6.01 33.08 24.11 25.04 16.18 17.53 3.67 33.24 11.74 11.33 22.54 11 ER2a ExonRegion 0 19.53 19.62 10.80 8.26 10.20 20.83 7.89 4.30 4.89 9.59 20.90 5.73 18.86 17.93 12.21 37.15 15.92 10.55 14.27 6.53 5.54 8.40 20.74 12 E2a_E3b KnownJunction 0 9.56 14.27 13.78 11.12 0.00 5.00 7.60 4.44 4.51 7.09 19.69 7.80 6.33 9.89 9.77 7.35 3.65 8.83 0.00 9.20 2.84 2.69 3.93 13 I2_AR1 ActiveIntronRegion 0 1.35 2.84 4.91 1.44 1.70 4.43 3.21 2.62 0.94 6.42 5.41 1.46 1.47 11.14 8.79 11.72 7.14 19.27 2.43 10.82 1.96 1.32 4.11 14 ER3a ExonRegion 0 2.82 10.17 7.35 4.54 21.41 11.00 15.89 5.19 3.71 8.79 17.40 4.33 6.25 16.78 8.70 10.90 11.00 8.01 2.12 13.48 5.14 5.56 10.77 15 ER3b ExonRegion 0 13.41 47.61 44.87 29.90 74.37 55.04 65.69 29.08 19.51 42.17 86.90 29.35 37.80 89.78 38.19 62.02 76.11 41.85 44.78 48.90 29.81 25.80 41.50 16 E3a_E4a KnownJunction 0 12.74 76.10 84.44 47.45 26.06 57.18 39.08 53.60 33.33 64.58 108.40 55.97 60.22 120.25 72.56 101.60 62.09 63.38 62.87 57.85 35.83 40.54 59.75 17 ER4a ExonRegion 0 29.76 79.56 92.16 53.28 50.19 45.25 46.26 61.76 38.07 69.41 141.74 114.80 161.96 132.86 79.59 113.64 115.03 79.65 67.23 72.33 34.33 47.23 56.56 18 E4a_E5a KnownJunction 1 82.68 205.95 108.93 68.26 27.42 44.41 43.24 73.77 24.86 69.36 126.14 217.42 101.78 155.63 89.13 53.75 114.91 51.90 48.38 82.71 5.62 67.97 40.80 19 ER5a ExonRegion 0 90.72 266.46 95.14 52.26 76.23 29.44 58.85 52.50 27.61 70.21 144.16 215.17 223.85 119.76 92.02 72.17 126.02 42.48 62.98 82.65 20.45 57.30 29.09 20 E5_Da NovelBoundary 0 0.00 12.17 1.15 5.29 0.00 0.00 15.90 4.44 0.00 3.20 0.00 6.30 0.00 0.00 5.19 3.59 12.16 1.91 4.80 3.26 0.00 12.31 4.35 21 E5a_E6a KnownJunction 1 158.99 411.05 88.73 50.88 78.61 43.90 78.48 44.03 28.18 63.82 94.29 165.65 251.28 125.02 98.03 26.40 111.73 25.25 50.35 64.36 6.30 24.74 31.41 22 ER6a ExonRegion 1 90.22 287.73 108.04 88.28 69.26 36.29 68.68 42.97 31.14 68.64 96.91 323.94 361.02 158.27 130.67 89.91 102.19 39.91 44.41 93.72 14.48 75.58 32.59 23 E6a_E7a KnownJunction 1 66.16 204.70 142.57 103.65 86.33 37.08 79.23 40.95 32.93 102.94 129.09 403.48 433.58 174.00 136.97 117.23 110.71 63.92 46.59 110.64 21.13 97.12 46.18 24 ER7a ExonRegion 1 60.86 275.71 92.68 77.47 85.25 38.12 64.36 41.33 31.57 64.57 99.83 319.47 344.59 160.60 134.63 125.48 103.02 57.83 51.72 72.96 35.97 58.69 29.13 25 E7_Da NovelBoundary 1 13.34 46.70 22.29 10.22 16.81 2.44 16.74 20.29 8.80 12.30 10.74 31.51 37.98 27.25 4.45 42.55 4.21 18.12 0.00 35.47 0.00 2.69 4.27 26 E7a_E8a KnownJunction 1 78.24 298.30 75.60 59.80 88.88 64.17 65.63 30.93 18.52 61.33 108.87 290.79 116.55 178.00 98.40 86.39 78.54 49.37 79.25 35.15 7.91 45.37 15.37 27 I7 Intron 0 7.64 15.16 7.50 15.78 13.74 4.83 16.68 6.71 8.33 12.08 3.83 19.28 17.04 11.36 6.81 13.57 9.60 10.09 7.64 20.10 1.63 3.58 6.09 28 I7_AR1 ActiveIntronRegion 0 3.60 12.99 12.11 11.58 8.61 1.95 9.52 11.36 9.00 10.27 6.29 17.67 15.34 18.96 9.84 41.10 25.43 34.28 15.38 31.73 3.80 5.28 19.63 29 I7_AR2 ActiveIntronRegion 0 0.81 5.01 16.21 16.88 12.56 3.95 4.48 16.75 8.08 8.20 8.92 18.98 17.68 18.74 12.27 49.61 38.09 45.20 25.48 46.81 10.34 5.29 25.30 30 I7_SR1 SilentIntronRegion 0 5.12 4.23 7.32 7.09 7.77 1.76 7.87 3.81 5.69 6.66 2.24 9.95 12.91 13.37 8.08 19.22 14.36 21.74 6.35 21.70 3.74 2.15 10.49 31 I7_AR3 ActiveIntronRegion 0 5.41 10.41 6.23 4.50 14.15 0.94 10.15 1.73 6.26 5.25 3.63 4.39 4.05 12.12 7.04 9.62 5.63 4.86 9.78 14.88 1.88 0.36 4.51 32 I7_SR2 SilentIntronRegion 0 1.86 6.24 21.83 9.16 1.38 3.22 8.31 5.08 6.80 9.64 3.52 28.63 30.08 12.77 15.01 12.63 8.88 6.83 7.00 23.44 0.47 5.50 9.82 33 I7_AR5 ActiveIntronRegion 0 2.88 8.93 14.01 11.28 8.43 1.39 16.98 11.11 8.52 8.84 1.71 25.87 22.38 5.86 6.95 10.94 6.44 4.05 1.93 20.27 0.17 2.52 5.51 34 I7_SR3 SilentIntronRegion 0 1.97 4.60 2.43 6.49 9.62 2.20 9.70 5.14 4.66 7.28 2.57 15.84 19.18 7.35 4.30 6.33 5.71 2.45 4.67 10.48 0.00 1.66 3.52 35 I7_AR6 ActiveIntronRegion 0 6.57 14.96 2.98 14.61 11.82 5.40 19.26 5.47 7.52 12.57 0.63 14.82 12.27 6.34 11.27 7.77 0.54 2.25 2.60 17.74 0.36 4.77 6.24 36 I7_SR4 SilentIntronRegion 0 12.57 20.07 3.27 15.17 13.89 2.81 22.50 8.19 5.51 8.37 2.57 19.36 24.07 7.67 3.92 6.21 3.26 5.96 2.82 13.56 0.74 1.52 4.30 37 I7_AR8 ActiveIntronRegion 0 14.82 22.36 8.02 18.75 20.42 7.43 28.26 7.61 11.65 16.09 4.74 23.58 20.32 18.47 5.68 19.43 19.86 17.66 13.55 21.12 3.51 3.09 4.86 38 I7_SR5 SilentIntronRegion 0 8.32 19.86 3.79 9.35 5.04 3.50 14.50 1.13 4.54 11.31 0.40 14.90 15.49 7.63 4.99 1.87 8.37 1.85 3.04 13.11 0.00 7.03 0.00 39 I7_AR9 ActiveIntronRegion 0 7.63 22.97 9.64 25.15 17.40 6.17 20.02 6.90 10.33 14.54 4.65 23.46 17.09 13.04 4.86 12.57 9.82 9.91 8.88 24.03 1.25 6.56 3.14 40 I7_SR6 SilentIntronRegion 0 6.48 14.18 6.37 25.12 18.54 10.42 19.24 7.87 9.29 23.52 4.67 22.48 16.88 9.74 5.98 13.27 3.39 3.80 7.75 15.42 0.33 4.32 3.99 41 I7_SR7 SilentIntronRegion 0 10.81 21.32 6.47 22.50 16.95 8.37 15.39 7.11 10.53 15.51 6.82 24.13 15.80 9.14 7.87 10.63 7.79 5.28 8.89 24.74 1.40 4.39 6.15 42 E8_Aa NovelBoundary 0 68.83 22.43 11.95 46.51 21.65 12.89 65.14 14.95 13.22 24.34 12.11 12.60 40.58 7.59 14.09 12.30 16.92 4.10 13.18 24.22 0.00 0.00 16.05 43 ER8a ExonRegion 0 138.32 189.21 86.92 89.78 82.81 48.32 66.62 60.52 44.44 85.70 127.33 192.05 233.94 163.16 101.32 107.73 143.02 63.01 63.61 56.77 40.02 43.66 34.44 44 E8a_E9a KnownJunction 0 145.21 106.89 114.90 98.92 94.06 121.35 82.50 64.32 55.47 106.88 153.41 155.75 118.01 192.71 132.15 111.85 118.84 73.37 37.55 62.32 20.02 46.41 28.51 45 ER9a ExonRegion 0 114.62 106.04 93.06 116.74 116.76 84.12 119.97 75.55 48.76 101.21 153.00 182.52 228.20 136.50 108.73 112.49 129.44 76.02 62.62 74.71 28.93 59.86 45.43 46 E9a_E10a KnownJunction 0 32.97 69.33 25.19 34.26 61.12 15.73 38.69 19.18 15.16 52.19 36.69 6.00 33.93 40.44 13.35 12.48 31.60 32.42 27.11 35.79 11.61 11.21 20.40 47 E9a_E11a KnownJunction 0 101.80 59.59 68.24 78.94 101.19 55.82 74.11 36.10 47.28 53.48 139.25 205.27 152.59 83.88 130.17 66.82 102.20 49.41 20.42 77.53 18.53 56.76 23.22 48 ER10a ExonRegion 0 39.69 37.27 44.61 45.48 33.10 31.49 32.06 20.67 14.32 54.36 28.84 33.76 47.34 36.26 13.46 22.18 26.41 30.98 22.69 30.28 10.24 7.93 12.15 49 E10a_E11a KnownJunction 0 66.09 21.97 30.45 39.86 29.97 14.25 19.48 11.38 13.05 44.99 20.32 19.36 59.74 22.19 0.00 22.81 26.09 45.39 22.31 29.34 0.00 8.51 0.00 50 ER11a ExonRegion 0 158.30 106.26 129.78 129.64 114.45 94.96 99.30 77.03 46.49 90.56 149.05 199.95 204.24 144.25 146.42 111.52 108.79 87.54 53.65 99.46 19.83 61.91 37.54 51 E11a_E12a KnownJunction 0 216.19 146.16 113.33 129.22 155.60 118.68 120.79 95.00 50.26 102.91 168.15 390.13 259.24 184.41 175.54 86.22 95.37 57.12 49.04 140.36 26.32 70.72 55.23 52 ER12a ExonRegion 0 125.73 102.77 123.50 121.19 135.63 80.39 98.85 76.65 45.65 93.65 133.96 272.98 215.20 128.35 156.39 113.71 104.68 77.65 49.36 87.71 25.90 58.73 46.07 53 E12a_E13a KnownJunction 0 70.38 86.70 126.34 121.36 147.62 57.30 101.57 108.52 54.43 93.13 152.25 267.39 177.91 146.21 196.43 97.41 99.30 55.51 56.10 103.42 34.66 39.50 47.55 54 ER13a ExonRegion 0 99.87 60.28 107.34 89.31 104.38 59.44 72.79 80.70 45.53 96.56 126.70 269.52 173.37 114.49 142.29 107.82 97.66 70.41 64.07 70.68 28.42 52.54 58.26 55 E13_Da NovelBoundary 0 2.82 0.00 8.40 10.52 12.14 2.67 11.84 3.49 3.15 5.43 8.95 12.60 6.82 6.83 8.90 7.60 13.56 5.89 4.42 17.77 3.15 12.19 0.00 56 E13a_E14a KnownJunction 0 3.04 0.00 5.03 9.46 28.18 2.78 13.29 8.30 3.62 5.86 12.74 30.61 12.50 12.66 13.47 8.29 13.46 0.00 0.00 6.46 2.72 17.88 0.00 57 E13a_E15a NovelJunction 0 6.22 9.14 5.68 13.09 8.32 2.16 4.50 4.31 0.00 6.29 2.32 6.30 0.00 9.77 0.00 8.12 3.46 0.00 4.71 2.36 0.00 5.69 6.91 58 E13a_E16a KnownJunction 0 78.53 29.14 85.51 54.07 71.14 14.14 25.88 38.36 35.59 65.17 67.33 108.79 136.52 99.36 173.19 96.30 84.24 46.97 49.88 50.88 15.75 38.15 39.44 59 E13a_E17a KnownJunction 0 11.85 11.58 10.44 19.24 11.21 7.15 1.77 3.49 3.41 21.60 5.16 7.65 12.99 9.77 9.15 8.12 3.55 2.57 8.19 23.59 5.87 10.90 4.18 60 I13 Intron 0 5.84 5.57 4.49 8.22 10.27 3.74 11.34 5.11 3.48 8.72 5.01 21.27 18.31 4.91 3.05 6.58 5.11 3.06 2.65 7.40 1.58 6.37 3.11 61 I13_AR1 ActiveIntronRegion 0 2.02 11.67 2.95 5.61 9.43 0.00 2.71 3.46 0.00 0.00 4.05 16.08 16.97 2.44 3.45 5.10 0.00 1.98 0.00 3.44 2.62 4.91 3.08 62 I13_AR2 ActiveIntronRegion 0 6.12 8.97 7.31 10.34 10.47 2.99 14.70 3.90 2.70 7.25 5.69 24.62 15.96 6.87 4.85 6.88 4.31 2.96 2.08 8.40 2.15 6.80 3.53 63 I13_SR1 SilentIntronRegion 0 5.84 1.66 2.55 4.51 4.89 4.37 7.92 3.24 4.03 8.72 7.10 17.92 10.36 3.67 4.42 6.73 8.22 1.15 1.32 8.22 1.52 5.06 1.47 64 I13_AR3 ActiveIntronRegion 0 1.79 0.87 1.94 7.08 8.40 4.53 8.96 6.87 4.58 11.50 2.38 16.63 15.46 2.24 0.83 2.66 3.35 2.44 0.89 5.76 0.62 6.61 0.92 65 I13_SR2 SilentIntronRegion 0 6.60 3.79 3.05 4.52 12.20 2.89 7.86 3.84 2.89 6.50 3.61 13.24 19.24 2.90 1.21 4.28 2.22 0.92 1.49 7.58 1.69 8.45 3.03 66 I13_AR4 ActiveIntronRegion 0 9.90 8.09 4.52 11.15 15.07 4.80 13.42 8.05 4.09 10.84 6.15 28.92 32.26 6.75 2.21 12.27 8.93 7.16 8.03 6.92 1.45 4.94 6.22 67 E14_Aa NovelBoundary 0 9.85 20.33 1.83 8.22 24.70 16.47 22.88 13.88 3.39 10.26 4.42 32.86 16.56 7.42 4.45 0.00 12.62 1.87 4.61 11.76 2.84 5.94 3.76 68 ER14a ExonRegion 0 15.27 7.10 9.75 15.96 23.41 9.43 25.84 16.90 6.04 8.87 18.39 49.37 42.69 13.11 7.76 23.34 15.13 3.82 3.15 8.12 6.45 16.57 6.51 69 E14_Da NovelBoundary 0 32.15 11.64 1.57 8.12 11.46 15.96 12.59 6.98 5.67 19.77 7.00 23.71 41.07 9.48 0.00 4.36 8.60 1.87 0.00 8.82 0.00 20.45 0.00 70 E14a_E15a KnownJunction 0 16.52 0.00 6.98 10.72 7.30 5.74 12.67 2.22 5.01 0.00 18.43 5.85 31.82 7.24 13.97 4.36 4.77 7.50 0.00 3.20 5.37 4.59 0.00 71 I14 Intron 0 10.16 10.68 6.29 11.04 12.36 6.81 12.36 7.47 3.50 12.70 3.68 16.82 22.98 5.40 4.47 8.88 7.18 6.08 2.88 7.71 3.59 9.81 5.06 72 I14_AR1 ActiveIntronRegion 0 11.64 15.41 4.73 8.84 12.99 10.19 14.77 8.45 4.28 14.23 3.90 21.68 33.22 4.72 3.27 9.39 7.59 6.65 1.81 8.25 1.08 13.95 2.69 73 I14_SR1 SilentIntronRegion 0 4.92 4.20 9.32 12.42 5.26 4.76 9.70 6.32 4.16 14.52 5.38 19.97 14.95 4.29 7.99 10.09 12.44 7.84 2.73 7.73 7.04 9.74 10.50 74 I14_AR2 ActiveIntronRegion 0 12.25 9.53 6.04 12.88 16.97 4.04 11.31 7.10 2.03 9.42 2.13 8.28 15.97 7.14 3.39 7.37 2.73 4.06 4.39 7.03 4.24 4.59 4.03 75 E15_Aa NovelBoundary 0 30.60 5.26 7.60 14.25 11.38 2.44 33.70 12.77 5.32 9.19 6.63 18.46 25.49 17.66 0.00 16.58 3.83 6.05 3.67 11.06 0.00 7.90 4.35 76 ER15a ExonRegion 0 20.06 11.31 15.66 20.01 34.33 14.58 20.53 10.91 6.40 18.11 24.76 35.04 23.68 16.12 12.49 31.89 15.93 17.65 7.70 18.41 8.71 12.59 12.74 77 E15_Da NovelBoundary 0 7.48 12.17 3.96 14.72 24.02 2.90 32.24 16.63 5.99 19.56 4.79 0.00 13.64 4.94 5.19 3.76 0.00 0.00 0.00 5.88 0.00 3.12 0.00 78 E15a_E16a KnownJunction 1 20.08 5.13 2.99 18.38 7.81 2.38 1.68 2.55 2.63 6.96 6.84 49.37 0.00 2.41 6.18 42.72 8.51 4.85 4.42 11.70 8.71 8.63 13.83 79 I15 Intron 0 19.94 9.90 4.78 8.30 16.72 5.31 8.03 8.16 3.13 11.38 4.97 12.94 10.91 5.98 7.71 6.42 6.22 5.95 2.78 5.57 1.01 4.98 3.65 80 I15_SR1 SilentIntronRegion 0 14.00 5.46 4.18 6.12 15.25 5.61 6.12 8.23 3.33 7.94 5.87 9.78 7.74 7.14 6.63 8.67 8.54 8.23 2.79 5.91 1.22 4.58 5.11 81 I15_AR1 ActiveIntronRegion 1 15.99 7.00 3.00 6.81 7.14 0.00 7.21 0.00 0.00 24.08 2.58 28.86 15.63 0.00 5.16 0.00 3.30 0.00 3.19 10.64 0.00 2.08 0.00 82 I15_AR2 ActiveIntronRegion 0 32.13 19.01 6.07 12.79 20.03 4.88 11.94 8.29 2.84 18.03 3.26 18.96 17.25 3.84 9.99 2.08 1.64 1.54 2.77 4.78 0.62 5.87 0.82 83 E16_Aa NovelBoundary 1 45.49 30.85 5.62 33.80 27.50 2.21 6.36 7.85 3.12 20.12 9.48 18.01 46.75 2.30 27.44 7.35 0.00 2.11 4.52 0.00 0.00 5.76 3.67 84 ER16a ExonRegion 0 23.94 34.02 25.53 32.03 28.21 22.30 20.56 23.42 16.64 33.32 18.56 28.55 22.60 20.22 20.11 22.93 15.20 39.21 23.84 26.41 6.73 13.99 11.05 85 E16_Da NovelBoundary 0 0.00 6.38 2.87 3.76 15.79 8.12 17.14 7.15 2.52 14.18 5.00 12.60 0.00 4.59 4.45 0.00 0.00 1.58 9.60 12.40 0.00 0.00 0.00 86 E17_Aa NovelBoundary 0 19.19 6.18 14.28 26.54 46.26 14.37 27.60 27.60 19.53 21.03 4.53 6.30 19.15 20.25 0.00 15.30 4.77 17.66 13.65 14.06 3.09 5.94 3.93 87 ER17a ExonRegion 0 15.78 21.47 14.05 17.47 10.81 9.17 4.59 8.64 5.51 24.07 4.61 11.11 6.73 13.27 16.50 3.51 7.97 8.87 4.44 8.49 3.63 3.33 3.77 88 E17_Da KnownBoundary 0 22.37 11.25 14.96 9.59 19.19 4.43 3.97 9.08 6.94 13.89 2.68 0.00 8.28 5.36 8.90 0.00 7.20 4.10 0.00 11.51 3.15 2.63 0.00 89 ER17b ExonRegion 0 4.92 4.98 5.31 6.18 2.74 1.02 3.21 4.52 2.26 6.13 1.34 1.52 2.85 6.13 7.35 1.26 3.25 2.79 0.21 3.26 1.45 1.09 1.27