Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC9A9 Gene 0 47.22 1.81 7.12 5.84 35.99 15.09 10.26 15.29 11.08 6.85 12.67 17.36 23.18 19.72 16.70 14.63 28.27 0.95 0.00 1.44 46.07 15.76 11.27 2 498717 Transcript 0 10.89 0.53 0.64 1.57 6.94 2.53 0.36 1.58 1.44 0.99 4.73 5.61 5.96 2.05 7.04 3.21 8.01 0.24 0.00 0.09 0.67 3.53 0.63 3 316549 Transcript 0 46.63 1.73 5.37 5.52 31.41 13.20 10.19 13.74 9.81 7.08 8.85 15.29 23.62 12.65 16.82 9.51 23.64 0.67 0.00 0.73 27.64 15.67 8.04 4 474727 Transcript 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.68 0.00 0.00 0.00 2.78 0.00 3.41 5 474151 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 483124 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.41 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 0.00 7 450105 Transcript 0 0.00 0.00 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.05 0.26 0.00 0.51 0.00 0.00 0.00 0.27 0.00 0.00 8 498821 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.18 0.00 0.00 0.00 0.23 0.00 0.06 0.00 0.00 0.00 0.16 0.00 0.00 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 1.99 0.00 11 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.33 0.00 12 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2_Ad KnownBoundary 0 59.79 0.00 1.27 1.60 11.80 15.10 21.02 0.00 1.39 0.00 9.90 0.00 0.00 12.89 8.90 23.41 26.18 0.00 0.00 0.00 11.92 5.02 8.45 14 ER2b ExonRegion 0 14.42 0.00 0.15 0.60 3.68 2.18 5.96 0.00 0.54 0.00 3.62 0.00 0.00 4.06 2.54 7.06 7.01 0.00 0.00 0.00 5.37 1.04 3.49 15 ER2c ExonRegion 0 30.02 0.00 1.23 1.36 8.03 9.34 13.24 0.00 1.24 0.00 6.15 0.00 0.00 8.56 6.59 16.75 19.81 0.00 0.00 0.00 9.62 4.74 5.87 16 ER2d ExonRegion 0 36.51 2.45 2.28 3.79 28.41 16.80 15.08 11.20 18.32 5.21 16.80 12.83 18.90 21.37 14.34 24.15 38.17 0.45 0.00 2.11 27.87 23.12 9.70 17 E2_Da NovelBoundary 0 22.52 0.00 0.00 0.00 4.33 0.00 3.71 1.97 0.00 0.00 2.42 12.00 0.00 2.41 0.00 0.00 3.83 0.00 0.00 0.00 0.00 2.57 6.66 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 2.90 16.55 5.79 0.00 2.38 2.78 1.64 7.11 6.30 14.93 0.00 13.85 4.36 13.84 0.00 0.00 0.00 0.00 6.25 0.00 19 E2a_E4a KnownJunction 0 10.45 2.89 5.12 3.23 71.05 46.85 62.31 14.79 13.86 3.79 9.63 24.01 28.24 23.43 11.13 14.78 46.19 0.00 0.00 0.00 33.05 10.72 0.00 20 E2a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 4.68 0.00 0.00 0.00 2.78 0.00 3.41 21 I2 Intron 0 28.96 0.63 0.00 0.63 1.66 1.14 0.41 0.80 0.57 0.00 1.80 4.28 1.20 0.42 1.80 0.00 3.08 0.00 0.00 0.00 0.69 3.24 0.91 22 I2_AR1 ActiveIntronRegion 0 29.32 0.64 0.00 0.64 1.68 1.15 0.42 0.81 0.58 0.00 1.83 4.33 1.22 0.42 1.83 0.00 3.12 0.00 0.00 0.00 0.69 3.28 0.92 23 E3_Aa NovelBoundary 0 36.60 0.00 0.00 4.13 3.48 0.00 5.56 1.89 0.00 0.00 4.95 6.30 0.00 0.00 4.45 3.67 13.18 0.00 0.00 0.00 0.00 3.12 8.45 24 ER3a ExonRegion 0 32.66 1.60 1.91 1.81 4.27 1.80 1.07 2.36 1.55 1.34 7.07 10.52 2.96 6.14 7.28 5.27 10.20 0.72 0.00 0.27 2.02 4.34 1.90 25 ER4a ExonRegion 1 31.64 2.44 3.27 4.65 22.62 14.21 12.97 11.38 10.94 11.46 8.91 28.49 58.01 26.59 13.03 8.62 41.07 0.00 0.00 0.53 17.47 24.71 2.24 26 E4a_E5a KnownJunction 1 40.90 5.79 1.12 2.06 27.42 24.25 8.79 22.43 17.59 9.08 13.69 62.27 68.18 27.25 20.15 15.30 64.14 0.00 0.00 0.00 16.93 43.84 8.02 27 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5a ExonRegion 1 30.01 6.70 3.96 5.71 26.59 18.50 14.22 15.40 11.39 5.28 24.83 73.49 63.01 31.05 15.40 8.61 45.03 0.14 0.00 3.76 20.79 28.39 6.33 29 E5a_E6a KnownJunction 0 16.15 14.87 2.60 6.96 36.50 16.35 16.74 14.46 13.98 5.61 24.06 40.36 55.35 26.61 15.08 7.60 33.38 0.00 0.00 3.00 23.04 18.13 0.00 30 ER6a ExonRegion 1 19.99 6.13 6.99 6.00 26.26 13.85 8.45 16.91 12.98 3.39 25.28 41.36 78.36 32.88 6.43 19.66 46.97 1.85 0.00 2.16 39.84 17.66 19.65 31 E6_Da NovelBoundary 0 12.59 0.00 7.86 4.23 21.39 19.93 10.33 16.68 8.71 1.21 22.95 18.61 12.17 25.96 0.00 11.02 28.05 0.00 0.00 0.00 12.73 15.31 28.51 32 E6b_E8a KnownJunction 1 24.97 0.00 12.09 5.96 29.97 13.97 6.54 17.37 17.53 4.00 22.22 42.61 96.42 24.49 15.20 23.33 50.77 1.74 0.00 0.00 21.31 36.74 21.34 33 ER6b ExonRegion 1 16.58 0.00 9.91 6.25 33.67 19.56 6.29 15.70 14.62 3.25 23.68 39.33 83.64 32.21 9.67 23.28 47.59 2.46 0.00 0.00 24.79 28.82 26.43 34 I6_SR1 SilentIntronRegion 0 11.61 0.00 0.00 0.56 2.60 0.76 2.02 0.71 0.89 0.71 0.00 1.54 6.04 0.34 0.73 2.47 0.98 0.00 0.00 0.00 1.22 0.00 1.22 35 I6_AR2 ActiveIntronRegion 0 15.83 0.00 0.00 0.50 9.33 1.34 4.93 0.98 2.13 1.25 0.12 2.70 5.11 0.00 1.94 2.72 4.21 0.45 0.00 0.91 1.08 0.00 0.00 36 I6_SR3 SilentIntronRegion 0 51.50 0.36 3.00 2.84 15.10 0.82 3.48 4.39 1.71 0.92 0.22 1.63 2.89 0.05 2.27 1.39 2.30 0.00 0.00 0.14 1.38 0.19 1.48 37 I6_AR3 ActiveIntronRegion 0 23.28 0.00 3.68 5.45 5.35 0.00 6.24 1.98 2.47 0.00 0.00 0.00 0.00 0.00 2.90 1.70 0.00 0.00 0.00 0.00 0.94 0.00 2.94 38 I6_AR4 ActiveIntronRegion 0 25.94 0.00 2.68 4.97 10.90 1.16 1.93 5.13 2.59 1.04 0.14 1.05 1.58 0.20 0.51 2.68 3.25 0.00 0.00 0.00 0.65 0.00 1.13 39 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 0.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 40 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER8a ExonRegion 1 13.90 0.89 6.30 8.29 25.07 8.52 13.00 12.58 12.21 5.69 18.21 53.26 53.89 34.96 12.43 17.68 34.63 0.64 0.00 1.23 58.53 21.12 15.65 42 E8a_E9a KnownJunction 1 28.82 0.00 6.09 10.16 36.84 12.61 8.13 9.73 13.14 9.19 4.90 24.91 71.26 32.14 0.00 40.16 60.40 0.00 0.00 3.00 80.37 17.33 15.19 43 ER9a ExonRegion 1 27.02 2.86 5.91 5.95 23.73 12.70 7.21 14.40 14.95 5.31 13.28 28.67 41.64 32.05 3.75 25.96 50.26 1.32 0.00 0.70 66.67 16.10 23.35 44 E9a_E10a KnownJunction 0 26.82 0.00 6.98 6.46 25.13 18.74 4.33 4.89 11.46 6.96 21.69 18.91 13.64 34.55 4.45 19.23 41.05 0.00 0.00 0.00 53.07 13.53 21.34 45 ER10a ExonRegion 1 23.28 2.03 4.90 5.45 30.77 23.84 2.65 6.91 14.82 5.73 23.19 30.31 14.07 35.73 2.90 16.35 51.16 1.85 0.00 0.00 55.09 14.58 20.56 46 ER10b ExonRegion 0 22.65 3.81 4.61 5.86 34.00 24.32 11.07 13.41 16.24 9.25 16.69 26.67 16.50 37.43 13.64 19.39 52.96 1.47 0.00 2.53 86.15 15.95 12.99 47 E10a_E12a KnownJunction 0 27.26 0.00 11.50 7.56 42.70 9.09 11.44 15.44 13.72 10.10 15.69 17.41 26.62 25.96 13.35 28.28 84.24 1.95 0.00 0.00 72.09 22.53 18.95 48 ER10c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.52 0.00 0.00 0.00 0.00 0.00 0.00 49 E11a_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.53 0.00 0.00 0.15 0.79 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 51 E12_Ab NovelBoundary 0 16.52 2.50 6.80 8.92 40.92 9.65 24.78 11.34 9.61 3.95 14.64 6.30 20.29 12.24 15.58 10.42 35.34 0.00 0.00 5.75 38.55 15.92 12.38 52 ER12a ExonRegion 0 18.38 0.86 6.64 7.96 40.84 8.20 17.77 14.74 14.50 7.85 20.45 11.17 28.39 25.99 14.05 24.87 70.71 1.56 0.00 4.48 82.58 21.60 21.95 53 ER12b ExonRegion 0 17.49 1.89 4.20 7.77 23.10 9.80 8.86 15.73 14.00 5.71 14.73 13.49 25.55 30.39 14.11 11.79 35.74 0.15 0.00 5.53 79.26 15.76 19.17 54 E12a_E13a KnownJunction 0 22.82 6.58 9.58 2.06 26.32 10.51 1.77 17.17 10.39 5.64 14.37 12.45 19.32 21.84 28.31 4.02 26.65 1.58 0.00 3.26 42.26 8.27 4.35 55 ER13a ExonRegion 0 16.93 4.07 9.27 3.41 25.50 20.69 11.05 15.99 10.34 5.13 15.89 15.29 14.66 20.15 26.84 12.07 31.67 1.85 0.00 4.45 42.63 9.96 9.27 56 E13_Da KnownBoundary 0 27.04 0.00 12.63 3.36 34.55 33.22 23.67 16.84 11.26 4.38 16.16 12.60 20.13 18.84 13.35 15.64 36.19 2.57 0.00 2.88 37.99 15.86 12.12 57 ER13b ExonRegion 0 20.24 1.82 8.56 10.31 46.33 27.47 14.47 10.80 10.88 3.82 21.57 15.04 31.60 15.64 15.78 16.79 31.27 1.20 0.00 1.19 33.71 24.38 14.48 58 E13b_E14a KnownJunction 0 28.75 0.00 7.78 15.85 94.82 33.67 16.91 5.91 11.40 5.08 31.74 23.86 39.93 24.07 20.89 11.71 22.25 0.00 0.00 3.13 44.05 17.02 19.72 59 ER14a ExonRegion 0 22.56 0.00 7.48 7.28 50.14 15.94 12.10 11.31 7.23 6.84 20.70 41.09 39.33 26.14 15.09 12.49 22.99 1.28 0.00 1.57 45.72 16.38 17.31 60 E14a_E15a KnownJunction 0 32.01 0.00 15.37 2.73 39.73 22.20 15.02 20.41 5.93 8.38 30.53 35.41 32.95 24.84 10.75 36.83 51.43 0.00 0.00 0.00 81.42 22.11 33.46 61 ER15a ExonRegion 0 27.21 0.00 12.20 2.73 27.78 16.50 12.74 18.11 7.94 6.23 23.01 23.50 28.59 26.68 14.09 33.40 41.81 1.85 0.00 0.00 84.16 23.02 26.99 62 ER15b ExonRegion 0 24.37 1.14 5.59 3.46 24.58 15.23 12.63 8.81 9.03 8.28 10.92 29.31 40.72 23.68 10.52 12.25 20.35 2.68 0.00 0.00 78.97 17.58 9.39 63 E15b_E16a KnownJunction 0 36.08 0.00 6.53 5.66 28.69 25.50 20.62 12.49 11.23 12.03 14.95 24.91 38.47 21.72 10.14 12.13 38.80 4.15 0.00 0.00 90.87 26.82 22.11 64 ER16a ExonRegion 0 36.54 4.71 2.78 3.43 51.10 20.70 13.38 12.71 8.81 9.54 11.05 29.35 35.21 26.01 16.69 18.86 26.66 4.00 0.00 1.59 71.84 18.25 11.29 65 E16a_E17a KnownJunction 0 34.23 0.00 2.96 5.46 42.61 6.70 4.06 13.84 9.37 2.79 16.27 12.60 38.80 19.31 17.80 7.69 25.90 4.15 0.00 2.81 44.05 10.35 3.41 66 ER17a ExonRegion 0 18.47 2.55 1.94 6.59 42.76 16.70 10.47 13.45 9.72 8.74 15.74 10.00 26.09 18.19 8.91 23.18 16.38 2.05 0.00 4.49 47.48 15.49 8.12 67 E17a_E18a KnownJunction 0 12.45 6.25 1.71 7.09 63.07 19.42 19.48 15.48 9.26 12.52 14.00 12.60 28.73 17.54 14.71 11.88 16.18 2.03 0.00 5.50 48.56 13.72 12.46 68 ER18a ExonRegion 0 33.92 0.84 4.58 9.69 44.45 15.38 12.83 13.68 9.62 9.28 10.37 11.64 32.60 28.52 11.86 20.99 36.43 1.34 0.00 3.01 59.69 22.40 19.31 69 E18a_E19a KnownJunction 1 49.12 0.00 7.45 12.32 32.94 26.12 15.24 15.48 17.56 7.04 12.90 0.00 39.61 19.13 33.75 7.78 35.34 0.00 0.00 9.72 60.85 24.86 20.06 70 I18_SR7 SilentIntronRegion 0 11.18 0.00 0.54 0.72 2.80 0.13 1.33 1.67 1.90 0.61 0.46 2.75 3.68 1.54 0.67 1.74 3.71 0.03 0.00 0.00 2.69 1.35 0.87 71 ER19a ExonRegion 0 54.53 2.72 7.71 4.28 29.08 12.73 9.80 16.80 12.06 6.61 8.94 18.95 16.24 21.27 19.95 17.41 36.93 0.00 0.00 5.38 72.29 17.22 15.35 72 E19a_E20a KnownJunction 0 50.01 13.94 12.71 2.86 30.39 10.96 10.51 16.96 11.86 6.07 14.42 17.71 24.67 25.84 22.13 22.99 38.80 0.00 0.00 0.00 79.45 13.78 22.79 73 ER20a ExonRegion 0 52.69 3.10 10.37 3.58 33.89 24.83 10.38 20.97 11.75 5.64 11.35 25.43 19.45 23.98 21.68 17.08 33.77 0.00 0.00 0.80 72.33 22.72 17.27 74 E20_Ab KnownBoundary 0 49.56 6.05 11.38 0.00 58.83 17.32 16.83 12.24 7.75 4.73 9.05 18.61 19.32 25.37 21.14 15.89 21.13 0.00 0.00 0.00 59.74 18.13 8.71 75 ER20b ExonRegion 0 43.15 1.31 12.11 2.05 57.34 12.25 7.97 18.20 8.14 9.26 12.49 14.43 18.66 19.51 16.07 14.80 28.93 0.00 0.00 0.00 60.71 17.09 16.26 76 E20_Da KnownBoundary 0 26.23 0.00 7.24 1.43 33.28 8.35 15.10 18.48 7.96 3.95 13.16 24.76 0.00 9.89 28.68 17.17 21.97 0.00 0.00 0.00 30.58 17.51 29.71 77 E20_Db KnownBoundary 0 34.97 0.00 7.30 0.00 25.47 0.00 10.11 7.39 15.39 10.15 14.53 0.00 0.00 29.31 14.22 8.46 31.14 0.00 0.00 0.00 34.10 29.70 4.10 78 E20b_E20d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER20c ExonRegion 0 30.57 0.00 9.80 0.91 37.01 3.77 13.75 18.15 15.78 8.16 17.50 11.55 0.00 21.11 22.24 18.82 33.19 0.00 0.00 0.00 47.01 28.47 23.33 80 ER20d ExonRegion 0 73.00 0.83 11.88 4.71 56.37 19.64 13.78 20.71 12.69 10.64 15.03 11.59 17.10 23.83 19.19 14.62 28.34 0.26 0.00 0.81 63.13 15.99 13.14 81 E20_Ac KnownBoundary 0 83.87 9.08 24.72 16.55 35.91 16.64 4.24 33.43 10.39 11.82 7.37 12.45 19.80 23.96 8.90 24.01 29.45 0.00 0.00 0.00 84.26 13.17 27.49 82 ER20e ExonRegion 0 99.68 1.71 12.80 10.73 45.23 20.15 9.36 21.21 13.63 7.68 9.87 8.07 17.08 14.82 27.38 17.91 22.29 2.43 0.00 1.39 58.87 12.22 12.02 83 E20_Dc KnownBoundary 0 51.34 3.35 7.66 12.02 33.11 2.67 15.02 9.28 11.75 4.81 4.26 0.00 14.93 4.83 4.45 14.10 7.39 3.81 0.00 3.07 28.42 3.12 11.78 84 E20_Ad KnownBoundary 1 47.56 0.00 8.49 10.16 40.07 23.34 18.77 14.79 6.25 12.57 9.48 0.00 0.00 4.94 33.01 7.95 18.61 0.00 0.00 0.00 44.54 15.25 13.06 85 ER20f ExonRegion 1 58.56 2.03 12.91 16.63 44.77 16.99 21.27 18.90 14.33 13.76 10.70 0.58 18.13 9.20 32.30 13.87 18.93 3.08 0.00 2.13 51.42 13.20 16.25 86 ER20g ExonRegion 1 73.99 0.66 13.86 12.93 65.34 19.73 11.55 34.65 16.59 9.50 14.26 6.92 13.52 11.56 34.87 14.43 29.00 0.75 0.00 1.65 49.74 18.61 14.15 87 E20_Dd KnownBoundary 0 101.72 0.00 1.42 10.52 52.89 10.68 13.73 15.07 14.61 2.95 9.58 0.00 12.82 21.72 31.89 19.57 11.97 0.00 0.00 2.56 21.56 20.27 6.66 88 ER20h ExonRegion 0 60.51 0.00 0.92 4.20 28.25 5.10 7.06 6.66 4.45 1.90 4.66 2.03 14.68 2.97 12.45 3.50 6.79 0.00 0.00 0.72 6.70 3.34 2.79