Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC33A1 Gene 0 62.47 72.56 45.92 61.29 85.87 46.43 53.45 34.02 39.63 55.06 59.53 189.98 163.50 90.03 85.04 78.74 76.17 37.36 28.44 40.83 47.38 125.74 87.29 2 359479 Transcript 1 9.99 10.51 5.10 21.00 17.47 36.04 21.17 4.87 5.65 14.36 29.87 6.30 6.57 52.71 26.70 42.56 27.07 21.12 16.97 12.15 30.24 35.59 59.96 3 392845 Transcript 1 54.25 58.72 36.63 43.36 68.36 32.04 36.93 26.08 27.14 35.38 16.80 136.55 92.56 27.06 54.30 19.52 14.66 6.14 11.01 20.20 5.41 85.27 28.86 4 475842 Transcript 0 0.00 0.00 0.00 1.90 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 5 460729 Transcript 0 10.10 11.07 12.97 6.80 8.74 1.82 6.87 2.75 3.66 3.99 1.10 9.23 9.28 2.37 10.70 4.19 2.58 2.09 3.17 2.87 0.47 2.22 2.29 6 468581 Transcript 0 11.34 9.01 1.77 14.75 7.64 0.00 4.28 1.89 3.04 8.57 7.69 18.16 0.00 12.07 4.45 3.50 12.25 7.38 4.80 5.50 2.72 2.69 8.19 7 496772 Transcript 0 0.00 0.00 0.00 2.06 0.00 5.62 1.90 2.14 0.00 2.98 5.16 6.30 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.33 0.00 8 ER1a ExonRegion 1 17.01 15.56 4.55 5.22 17.96 72.08 34.35 5.42 8.19 11.31 52.15 0.00 0.00 93.17 35.60 81.96 46.47 42.25 20.77 24.30 60.47 59.54 109.16 9 E1_Ab KnownBoundary 1 50.82 46.31 13.25 16.71 47.79 177.34 112.22 16.02 24.83 30.81 123.35 0.00 5.68 163.46 71.08 255.66 134.55 160.55 52.24 70.76 155.43 163.25 292.71 10 ER1b ExonRegion 1 11.74 21.36 25.60 31.11 27.68 33.91 25.11 19.89 32.85 48.72 90.24 83.70 117.19 135.82 58.25 135.03 128.54 87.86 39.96 46.84 114.52 93.75 127.86 11 E1_Ac KnownBoundary 1 40.45 104.13 35.04 53.44 72.33 50.71 43.37 36.43 39.53 71.78 110.66 207.67 228.56 168.05 39.19 178.50 206.36 100.48 47.72 43.59 125.28 144.88 124.46 12 ER1c ExonRegion 1 22.72 89.26 26.38 48.43 63.50 42.42 50.03 24.72 32.73 42.74 90.99 188.87 231.37 180.21 80.58 138.67 186.75 57.59 33.79 53.19 115.77 108.83 120.87 13 E1_Da KnownBoundary 1 30.23 68.28 8.96 43.58 67.66 22.71 40.45 25.59 20.92 18.67 80.23 89.28 115.25 87.65 24.72 84.68 80.88 67.78 31.72 33.56 48.87 47.39 58.82 14 E1a_E1d NovelJunction 0 0.00 0.00 7.10 24.24 0.00 0.00 0.00 5.09 15.77 11.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.19 0.00 0.00 0.00 0.00 0.00 15 E1a_E4a KnownJunction 0 0.00 0.00 0.00 1.90 3.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ad KnownBoundary 1 30.08 97.15 14.87 26.60 87.44 33.73 35.60 9.08 26.74 26.06 47.91 89.13 262.97 95.42 50.68 93.31 116.88 39.01 17.69 33.68 54.18 77.15 105.08 17 ER1d ExonRegion 1 47.27 119.53 21.78 70.57 132.30 48.09 61.78 36.30 49.95 44.73 108.89 198.67 412.20 186.95 92.52 160.83 170.55 102.86 40.70 56.03 88.39 119.22 148.46 18 ER1e ExonRegion 1 37.58 112.30 33.90 68.02 121.30 50.53 46.49 35.18 52.64 56.71 103.43 211.18 348.31 213.77 90.65 193.58 163.80 94.97 43.39 57.30 92.46 149.97 172.61 19 E1_Ae KnownBoundary 0 34.38 107.22 40.86 74.75 100.51 47.98 48.00 48.92 43.66 59.55 122.50 260.03 283.59 209.84 135.98 252.75 185.51 81.95 82.17 73.50 118.80 188.60 195.14 20 ER1f ExonRegion 0 39.16 80.33 35.77 84.47 82.12 38.96 55.14 46.01 44.74 53.67 101.07 177.69 217.74 163.55 108.89 158.72 155.14 53.58 50.63 65.26 78.49 156.55 126.59 21 E1_Db NovelBoundary 0 6.96 21.90 16.71 14.82 28.52 0.00 24.69 2.42 9.23 11.52 15.21 11.85 20.13 12.30 4.70 38.71 7.57 8.29 4.71 5.75 0.00 5.02 0.00 22 E1b_E2a KnownJunction 0 3.78 3.22 3.31 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 5.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1b_E3a KnownJunction 0 61.94 109.65 20.64 49.91 72.67 20.78 51.58 53.27 36.86 56.76 61.86 208.72 277.90 126.02 79.36 133.04 137.35 33.00 32.75 38.93 42.69 170.17 97.14 24 E1b_E4a KnownJunction 0 11.34 9.01 1.77 14.75 7.64 0.00 4.28 1.89 3.04 8.57 7.69 18.16 0.00 12.07 4.45 3.50 12.25 7.38 4.80 5.50 2.72 2.69 8.19 25 I1 Intron 0 8.09 8.47 13.42 14.64 11.65 2.75 11.05 3.07 4.40 4.71 7.78 20.66 24.42 8.57 11.71 12.32 11.25 2.97 3.29 7.25 1.10 2.47 4.04 26 I1_AR1 ActiveIntronRegion 0 3.70 15.40 11.80 17.09 5.08 3.68 10.70 1.56 4.02 5.01 13.66 16.86 28.38 12.36 9.70 22.98 17.67 5.54 3.02 10.93 0.63 4.83 4.21 27 I1_SR1 SilentIntronRegion 0 6.73 8.04 14.53 15.46 13.11 3.26 11.81 3.23 4.86 5.22 7.72 25.25 26.12 9.38 12.34 13.64 11.12 3.13 3.89 8.01 1.21 2.50 4.05 28 I1_AR2 ActiveIntronRegion 0 26.81 12.65 17.71 16.45 13.00 1.91 14.84 3.13 5.43 5.04 10.39 12.90 26.90 7.49 16.96 8.23 15.46 2.53 2.21 7.01 0.76 2.53 4.93 29 I1 Intron 0 9.88 9.90 15.84 10.74 11.89 0.00 10.37 7.09 7.01 9.04 2.45 12.07 12.61 6.45 15.24 5.03 6.29 4.28 1.35 6.75 0.00 1.76 2.49 30 I1_SR1 SilentIntronRegion 0 9.92 9.94 15.90 10.79 11.94 0.00 10.41 7.12 7.04 9.08 2.46 12.12 12.66 6.48 15.30 5.05 6.31 4.30 1.35 6.78 0.00 1.77 2.50 31 E2_Aa NovelBoundary 0 24.82 18.29 29.80 9.32 7.98 0.00 10.95 9.04 9.23 3.98 1.95 25.21 34.09 2.47 10.75 0.00 9.54 0.00 4.52 8.50 0.00 3.12 4.27 32 ER2a ExonRegion 0 16.42 18.93 22.63 13.60 17.48 3.64 13.73 5.51 7.32 6.75 2.20 18.45 18.56 4.74 16.34 8.38 5.16 4.17 6.34 5.75 0.94 4.43 4.59 33 E2_Da NovelBoundary 0 68.38 49.66 25.66 21.08 62.39 37.99 90.80 7.93 17.01 12.14 16.32 12.30 20.29 19.60 19.53 48.62 37.21 55.63 25.22 41.16 15.94 13.84 84.59 34 I2 Intron 0 7.20 7.51 14.54 11.13 8.49 2.43 9.01 5.95 4.78 7.50 2.79 15.48 21.32 2.65 6.77 8.40 5.52 2.23 1.84 8.47 1.40 3.13 6.27 35 I2_SR1 SilentIntronRegion 0 8.00 9.57 15.54 11.63 9.18 3.15 8.49 3.61 4.23 7.99 1.83 16.66 22.70 3.98 6.85 7.61 2.74 2.67 1.29 9.78 1.78 3.52 6.36 36 I2_AR1 ActiveIntronRegion 0 6.48 5.17 14.89 11.98 8.05 1.71 10.24 10.28 6.34 7.65 4.27 15.25 20.47 0.98 7.18 10.62 9.60 1.91 2.94 7.64 0.79 3.00 6.96 37 E3_Ab NovelBoundary 1 73.72 96.43 29.54 39.99 39.64 47.02 36.21 48.88 25.58 54.64 71.28 171.36 141.06 94.71 33.50 94.16 71.90 18.78 18.82 28.12 32.37 103.30 76.74 38 ER3a ExonRegion 0 62.51 95.31 22.38 42.43 53.87 37.78 44.40 47.59 36.89 58.19 68.30 201.18 219.18 116.50 72.72 121.26 120.59 27.84 26.12 34.04 46.13 156.54 97.89 39 ER3b ExonRegion 0 48.74 88.48 40.56 57.18 98.97 59.46 64.41 43.02 38.77 53.94 85.34 259.69 286.77 106.42 92.34 110.31 116.68 29.01 29.39 52.77 32.55 158.48 125.92 40 E3a_E4a KnownJunction 0 83.94 69.40 51.00 80.94 103.14 52.24 37.23 46.54 39.50 52.65 111.87 329.21 294.46 119.84 97.16 141.42 104.53 31.42 30.40 71.59 53.25 178.01 125.91 41 E3a_E5a NovelJunction 0 10.15 9.74 1.83 1.66 0.00 0.00 0.00 0.00 1.74 0.00 1.95 13.50 27.27 4.59 0.00 3.42 0.00 0.00 4.24 0.00 0.00 0.00 0.00 42 E3a_E6a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 5.62 1.90 2.14 0.00 2.98 5.16 6.30 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.33 0.00 43 E4_Aa NovelBoundary 0 17.71 18.81 10.85 15.08 4.33 5.68 14.84 13.31 17.42 12.76 2.21 0.00 6.49 2.65 4.45 13.07 4.30 4.39 4.80 8.69 3.09 2.45 11.78 44 ER4a ExonRegion 0 52.43 79.10 41.27 80.25 90.19 50.45 64.99 41.27 54.61 65.65 89.17 237.30 210.65 87.43 97.31 100.10 113.66 31.21 31.23 51.91 62.98 163.91 119.75 45 E4_Da NovelBoundary 0 23.78 40.06 15.58 37.92 28.52 12.95 30.56 21.19 26.27 17.65 22.32 79.68 59.09 13.42 9.77 21.96 8.88 16.21 4.80 20.90 9.08 11.02 16.30 46 E4a_E5a KnownJunction 0 41.04 68.47 24.04 59.07 93.12 32.88 51.01 20.74 32.26 34.57 99.50 265.44 167.68 96.71 103.96 90.83 123.80 31.84 41.79 30.81 51.83 217.75 118.57 47 E4a_E6a NovelJunction 0 14.22 0.00 0.00 4.56 0.00 0.00 0.00 1.77 3.04 2.90 2.47 37.96 0.00 7.06 0.00 3.59 8.04 10.78 12.89 0.00 0.00 0.00 0.00 48 I4 Intron 0 32.27 19.52 8.25 23.69 32.23 19.33 27.67 21.33 20.77 18.98 5.09 60.44 59.03 11.85 13.10 14.54 5.59 9.36 4.20 14.41 4.56 16.47 4.42 49 I4_SR1 SilentIntronRegion 0 32.51 19.66 8.30 23.87 32.47 19.44 27.88 21.48 20.93 19.12 5.13 60.89 59.47 11.94 13.20 14.65 5.63 9.42 4.23 14.52 4.59 16.59 4.44 50 E5_Aa NovelBoundary 0 38.75 29.99 21.97 28.77 41.77 26.06 17.71 39.02 23.67 32.48 11.95 44.86 113.79 14.13 24.85 20.51 9.16 8.33 8.28 23.97 0.00 8.63 14.43 51 ER5a ExonRegion 0 83.30 62.51 43.29 82.72 92.70 60.05 57.01 29.68 47.51 59.05 105.49 284.57 201.31 105.72 108.28 96.95 109.41 25.56 44.14 55.86 37.03 161.26 126.23 52 E5a_E6a KnownJunction 0 137.43 65.84 52.51 90.40 128.95 55.65 71.94 33.02 57.75 57.62 129.66 337.31 193.98 108.36 129.92 80.75 109.58 28.64 43.48 46.15 47.26 103.12 129.58 53 E6_Aa NovelBoundary 0 12.15 3.16 20.25 7.66 0.00 2.61 14.57 6.33 7.73 8.60 10.37 7.05 0.00 0.00 9.39 0.00 0.00 8.54 0.00 11.82 2.72 0.00 0.00 54 ER6a ExonRegion 0 86.25 66.39 42.62 77.05 66.65 63.13 72.07 29.60 42.29 56.09 81.51 253.43 138.14 128.10 125.45 95.23 89.90 40.65 37.56 49.97 56.52 143.95 147.57 55 E6_Da NovelBoundary 0 12.89 13.94 19.84 8.36 4.33 2.56 6.58 11.62 4.54 5.08 13.21 12.15 14.93 7.30 4.45 16.06 0.00 17.49 0.00 3.00 5.87 5.57 3.33 56 E6a_E7a KnownJunction 0 136.10 131.69 67.15 91.13 126.83 70.36 84.31 29.49 61.46 77.55 97.92 373.92 315.73 160.28 140.68 112.19 110.52 52.36 60.43 88.78 113.24 151.80 182.85 57 E7_Aa NovelBoundary 0 28.67 15.19 6.56 5.43 8.23 2.90 0.00 4.27 11.43 5.72 4.79 5.55 12.99 2.47 4.82 3.16 8.32 6.63 0.00 15.08 2.47 3.12 11.52 58 ER7a ExonRegion 0 99.21 116.25 55.43 87.61 126.87 61.22 74.50 41.96 51.93 83.59 97.08 224.15 207.49 156.37 156.78 102.95 106.11 50.30 36.42 54.18 64.11 146.01 134.93 59 E7_Da KnownBoundary 0 123.87 116.30 53.28 81.37 134.13 56.67 99.81 12.24 42.91 58.51 55.49 149.75 228.07 92.65 134.25 83.82 38.52 7.38 44.90 37.14 22.92 133.55 105.34 60 E7_Db KnownBoundary 0 115.87 99.26 24.22 63.76 125.55 81.43 98.31 21.40 22.74 40.99 38.85 251.48 185.22 88.59 107.79 40.93 34.69 18.94 27.95 18.47 6.30 118.79 80.41 61 ER7b ExonRegion 0 148.72 151.71 63.47 121.02 167.86 94.14 125.78 32.73 56.24 77.76 69.46 277.95 284.22 125.27 150.87 80.05 50.83 25.38 49.48 40.71 22.62 180.71 140.96 62 E7_Dc KnownBoundary 1 181.14 108.66 36.40 75.05 203.40 51.79 141.14 44.77 32.41 49.00 29.80 245.03 411.50 73.75 89.38 47.25 36.65 28.73 25.98 51.52 11.86 116.96 56.94 63 E7c_E7b KnownJunction 0 2.96 5.46 5.65 36.79 16.98 0.00 7.99 4.31 3.10 17.41 7.58 12.60 13.15 12.24 17.80 3.16 7.67 0.00 13.18 0.00 0.00 11.63 10.76 64 ER7c ExonRegion 1 155.33 136.32 52.06 118.88 189.11 79.39 131.63 42.88 49.72 80.17 50.44 275.55 343.13 100.70 114.55 61.07 51.43 37.31 46.34 39.46 12.44 168.43 102.97 65 ER7d ExonRegion 1 115.27 134.72 46.50 78.88 140.54 70.65 89.40 43.40 50.99 58.96 52.11 384.47 366.14 97.98 128.94 57.69 55.78 19.34 16.98 50.77 9.29 190.20 60.69 66 E7_Dd KnownBoundary 1 160.77 169.84 63.98 68.46 109.68 48.49 77.33 46.62 63.19 70.03 48.12 436.79 341.37 115.19 101.74 38.79 87.89 14.30 21.93 36.75 17.67 189.52 29.36 67 ER7e ExonRegion 1 100.66 107.06 69.09 81.13 135.38 57.65 70.68 52.16 49.46 70.76 31.09 269.20 185.12 53.47 97.86 39.04 29.32 11.73 16.29 38.91 8.84 168.04 50.96 68 E7_Ab KnownBoundary 0 62.53 78.60 82.88 102.05 208.06 25.89 91.02 46.45 44.91 82.82 41.69 250.88 109.08 61.51 132.89 44.18 13.46 19.03 32.94 25.89 34.84 100.91 79.73 69 ER7f ExonRegion 1 77.03 67.74 72.42 77.50 96.49 33.70 49.00 29.53 36.39 57.62 33.89 118.62 46.08 31.29 77.46 32.33 38.51 20.13 44.55 20.75 25.85 76.50 52.15 70 ER7g ExonRegion 0 7.83 10.37 4.17 5.59 1.34 6.42 3.18 0.00 4.82 0.00 2.51 3.90 0.00 0.65 10.73 0.00 0.00 0.55 5.73 1.49 1.98 2.50 6.75 71 IG16_SR5 SilentIntergenicRegion 0 12.05 26.44 14.80 46.63 32.20 17.07 24.76 12.80 23.05 24.01 1.55 48.67 48.26 10.17 16.75 14.80 7.16 6.82 13.27 11.61 2.46 29.08 19.54 72 IG16_AR4 ActiveIntergenicRegion 0 12.55 30.76 8.24 37.16 42.15 12.87 25.60 10.95 7.23 11.92 7.84 36.56 17.99 7.87 15.18 7.41 6.18 9.74 7.95 10.94 3.09 19.80 15.56 73 IG16_SR4 SilentIntergenicRegion 0 14.36 19.93 15.06 46.35 33.64 16.56 24.97 15.07 14.67 15.05 1.12 39.78 18.20 9.04 18.86 6.11 0.77 5.85 1.85 6.65 1.28 22.42 5.16 74 IG16_AR3 ActiveIntergenicRegion 0 7.77 14.95 9.52 32.59 50.05 19.52 26.53 13.75 18.76 19.74 1.49 49.05 28.52 5.64 13.27 3.41 3.90 3.22 8.19 8.82 1.70 19.25 13.93 75 IG16_AR2 ActiveIntergenicRegion 0 6.01 9.79 13.98 28.34 28.41 11.10 14.71 9.22 12.50 11.82 3.10 12.61 9.47 6.87 10.79 9.91 3.67 8.17 12.99 8.93 2.72 5.15 11.60 76 IG16_SR2 SilentIntergenicRegion 0 17.88 26.92 9.85 36.82 57.74 18.48 18.06 10.75 9.55 12.18 2.75 16.77 17.41 11.77 13.99 7.87 2.68 8.61 13.29 8.88 0.45 10.60 26.90 77 IG16_AR1 ActiveIntergenicRegion 0 26.67 51.66 25.71 74.86 45.47 8.11 24.40 23.41 24.58 28.15 3.51 20.71 15.98 2.86 20.41 4.39 5.62 4.81 6.87 18.85 3.00 25.08 15.68