Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SHOX2 Gene 0 5.11 4.79 0.52 1.93 29.26 42.79 22.12 21.44 39.32 20.43 3.61 5.31 1.95 9.89 1.55 8.71 205.76 10.00 29.19 74.28 157.46 113.90 80.66 2 389589 Transcript 0 0.00 0.30 0.00 0.00 9.52 15.86 7.34 1.15 5.63 1.43 1.15 0.45 0.49 5.20 0.30 4.73 113.78 2.48 26.67 28.27 31.63 17.12 19.31 3 425436 Transcript 0 1.51 1.07 0.00 0.00 10.87 6.39 5.74 3.63 5.10 0.90 0.79 0.00 1.26 1.55 0.00 5.16 38.35 1.89 1.19 9.10 19.39 14.73 11.85 4 441443 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.89 0.37 1.39 0.00 5 313019 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 483851 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 490689 Transcript 0 0.27 0.44 0.16 0.06 2.33 6.73 2.62 3.93 10.57 5.14 0.57 0.50 0.07 6.26 0.25 3.66 87.89 3.56 6.44 16.72 77.20 25.42 31.10 8 447589 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 0.30 0.00 0.00 9.52 15.86 7.34 1.15 5.63 1.43 1.15 0.45 0.49 5.20 0.30 4.73 113.78 2.48 26.67 28.27 31.63 17.12 19.31 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 7.30 14.20 10.47 0.00 1.79 0.00 0.00 0.00 0.00 7.12 0.00 20.93 105.00 0.00 55.15 31.83 40.22 15.00 59.16 11 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 4.37 0.00 11.46 1.67 0.00 0.00 0.00 0.00 0.00 0.00 100.51 9.53 0.00 41.29 25.82 27.68 46.10 12 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 4.94 9.87 10.39 0.53 8.65 2.29 0.00 0.00 0.00 4.37 0.00 14.86 146.51 5.54 37.00 48.28 43.40 31.41 65.28 13 ER1c ExonRegion 0 0.00 1.07 0.00 0.00 9.30 21.38 10.58 3.40 10.99 5.86 3.35 0.00 0.00 5.54 1.97 3.09 145.10 10.38 15.60 48.21 119.14 30.65 61.37 14 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 21.86 14.88 6.82 20.83 10.83 2.37 0.00 0.00 9.54 4.45 0.00 89.39 10.24 8.38 42.12 96.93 13.66 11.44 15 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 3.62 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 44.88 6.55 8.85 18.66 24.40 11.88 12.29 16 ER1d ExonRegion 0 0.00 0.00 0.00 0.00 2.68 12.20 8.25 2.99 14.92 8.78 1.93 0.00 0.00 5.56 0.67 0.00 103.60 6.96 10.41 36.42 83.66 15.87 6.55 17 ER1e ExonRegion 0 0.63 0.30 0.00 0.00 3.23 13.06 4.47 3.55 6.23 3.59 1.77 0.00 0.00 2.91 0.30 1.72 93.24 4.20 10.37 28.63 82.92 21.84 44.30 18 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 8.66 9.94 3.93 0.00 8.33 1.26 0.00 0.00 0.00 2.30 0.00 15.47 63.86 1.99 0.00 9.01 38.49 24.62 25.44 19 E1a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 3.65 18.51 5.52 11.67 22.31 16.98 0.00 0.00 0.00 2.47 0.00 3.85 63.30 13.14 8.75 49.98 115.96 22.53 26.29 20 I1 Intron 0 0.00 0.27 0.00 0.00 0.71 2.19 0.70 0.00 1.22 0.91 0.00 0.00 0.00 2.30 0.00 0.79 23.67 1.10 4.65 6.79 31.60 4.98 12.09 21 I1_SR1 SilentIntronRegion 0 0.00 0.27 0.00 0.00 0.71 2.20 0.71 0.00 1.23 0.91 0.00 0.00 0.00 2.31 0.00 0.79 23.80 1.10 4.68 6.83 31.76 5.01 12.15 22 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 1.93 0.00 0.00 0.00 0.00 0.00 2.41 0.00 4.36 24.87 6.14 4.80 5.50 37.81 6.25 29.19 23 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.55 0.97 0.48 0.00 2.06 1.35 0.59 0.00 0.00 1.68 0.00 4.48 18.81 0.85 2.28 10.46 23.74 5.52 9.18 24 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 10.36 2.90 0.00 0.00 1.79 2.74 0.00 0.00 0.00 0.00 0.00 7.60 22.16 2.24 4.42 8.50 22.73 3.06 0.00 25 ER2b ExonRegion 0 0.00 1.46 0.00 0.00 10.29 14.00 2.76 2.56 4.47 5.59 3.68 0.00 0.00 5.47 0.00 6.07 100.42 3.15 3.81 21.91 57.67 24.30 38.18 26 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.28 5.45 0.00 0.00 0.00 7.06 0.00 0.00 81.16 2.36 9.60 2.56 37.75 13.66 23.30 27 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 6.67 4.48 2.60 0.00 2.37 0.00 0.00 2.35 0.00 0.00 17.30 3.69 3.58 5.88 7.54 10.65 4.35 28 I2 Intron 0 3.80 1.77 0.00 0.00 11.79 21.79 16.96 7.91 16.11 4.95 1.01 3.03 0.45 6.05 0.00 2.76 110.20 2.88 10.71 37.98 76.07 61.71 43.91 29 I2_SR1 SilentIntronRegion 0 3.81 1.77 0.00 0.00 11.81 21.84 16.99 7.93 16.14 4.97 1.01 3.03 0.45 6.07 0.00 2.76 110.45 2.88 10.73 38.06 76.24 61.85 44.00 30 E3_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 24.45 21.12 12.41 11.50 16.03 1.07 0.00 0.00 0.00 2.47 0.00 4.36 140.07 4.39 8.56 32.21 126.89 38.15 71.19 31 ER3a ExonRegion 0 0.81 1.31 0.47 0.19 6.43 19.23 7.38 11.80 23.36 8.63 1.11 1.51 0.21 10.03 0.74 6.50 163.69 7.48 7.44 37.16 170.12 57.10 60.80 32 E3_Ab KnownBoundary 0 3.19 0.00 2.72 0.00 3.31 47.87 5.39 11.09 32.32 4.19 2.53 6.30 0.00 12.36 0.00 3.67 169.05 11.81 8.66 44.49 208.75 83.03 96.55 33 ER3b ExonRegion 0 1.92 0.69 0.23 0.00 8.22 20.57 7.43 10.59 18.59 7.01 0.69 0.32 3.11 11.79 0.48 9.62 141.87 5.23 13.84 40.54 175.28 63.22 58.23 34 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 3.31 22.26 11.70 6.90 27.31 16.41 2.63 0.00 6.82 11.30 6.30 0.00 163.44 3.69 3.58 55.67 214.18 30.25 41.74 35 ER3c ExonRegion 0 3.11 3.23 0.77 1.12 11.02 34.69 15.33 30.99 68.41 34.85 5.78 4.16 4.40 13.91 1.07 22.41 356.23 22.80 32.24 136.09 366.62 164.53 139.43 36 E3a_E4a KnownJunction 0 0.00 3.35 1.57 1.93 22.33 71.44 39.70 39.55 94.53 36.85 4.95 6.15 6.33 14.30 0.00 14.44 385.04 25.87 30.97 153.85 323.40 192.95 145.71 37 ER4a ExonRegion 0 1.97 3.16 0.65 2.35 26.76 115.66 44.97 34.81 87.42 50.58 7.73 9.55 2.75 11.48 0.00 21.93 375.11 31.00 40.81 177.40 329.49 259.40 163.64 38 E4a_E5a KnownJunction 0 5.70 2.83 1.18 2.06 32.85 166.21 45.00 29.74 86.20 51.09 11.69 19.81 0.00 17.13 0.00 24.61 466.67 39.42 50.92 206.77 364.92 272.12 209.14 39 ER5a ExonRegion 0 5.92 3.63 0.92 0.51 24.47 75.76 31.11 23.38 75.76 41.44 4.91 5.89 3.58 19.03 0.00 25.28 396.07 30.37 46.31 159.62 330.73 179.44 153.17 40 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 12.05 10.96 2.25 1.73 32.84 11.98 2.42 0.00 0.00 0.00 0.00 0.00 65.83 8.66 23.15 31.45 109.65 53.58 44.90 41 E5a_E7b KnownJunction 0 0.00 3.22 0.00 0.00 17.40 39.58 18.90 15.61 47.63 28.34 0.00 6.30 6.82 13.66 0.00 20.08 174.47 29.27 8.94 98.30 215.73 48.62 74.44 42 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER5b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 2.66 1.10 2.08 0.00 44 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 45 ER7a ExonRegion 0 2.17 0.05 0.76 0.00 8.90 20.17 2.29 2.99 30.34 12.99 2.72 0.12 0.38 3.07 2.35 3.13 73.60 6.59 12.14 33.41 95.53 39.59 38.89 46 E7_Ab KnownBoundary 0 3.41 3.16 0.00 0.00 0.00 12.78 0.00 4.89 13.77 8.78 0.00 0.00 0.00 2.47 5.19 4.27 40.58 2.07 0.00 20.58 33.92 15.98 23.56 47 E7_Ac KnownBoundary 0 0.00 0.00 1.74 0.00 7.64 12.55 12.63 8.71 27.66 19.93 2.68 0.00 6.17 4.83 0.00 3.42 104.07 16.21 16.38 54.27 123.25 42.07 40.21 48 ER7b ExonRegion 0 2.82 2.03 1.23 0.00 17.84 51.65 20.74 21.03 61.14 38.04 4.83 4.33 9.38 18.41 2.90 20.80 276.73 26.48 25.48 141.84 291.26 93.41 103.27 49 ER7c ExonRegion 0 3.08 3.10 0.55 0.52 5.27 34.46 10.19 13.90 39.86 24.06 2.87 3.92 2.99 11.24 1.35 13.16 264.06 16.68 24.45 112.02 294.06 96.80 97.76 50 E7_Da KnownBoundary 0 0.00 3.35 1.24 1.70 0.00 57.81 27.73 33.93 54.40 29.25 0.00 5.70 6.82 16.89 6.30 11.28 275.46 36.35 38.40 147.33 324.52 74.15 131.54 51 ER7d ExonRegion 0 10.39 12.48 1.00 4.54 60.65 87.54 44.66 39.87 69.31 37.95 6.94 12.43 5.88 16.12 3.36 14.18 324.71 17.22 41.08 120.29 212.21 202.39 136.09 52 E7_Db KnownBoundary 0 44.23 45.72 0.00 1.70 76.06 33.50 56.09 75.90 115.19 45.75 16.79 6.00 6.82 3.00 5.81 7.95 305.00 4.56 57.04 105.46 196.14 259.51 82.03 53 ER7e ExonRegion 0 11.79 7.83 0.64 4.58 64.14 61.50 41.14 37.48 58.16 31.53 5.52 9.93 0.93 8.98 2.59 6.11 218.63 7.18 60.94 97.44 109.57 191.89 87.65 54 E7_Dc KnownBoundary 0 3.33 9.87 0.00 0.00 33.19 31.00 21.15 16.06 21.15 18.27 0.00 5.55 0.00 5.77 0.00 0.00 36.28 0.00 8.85 31.32 10.87 70.42 7.68 55 ER7f ExonRegion 0 1.46 4.56 0.00 0.00 18.14 25.92 10.74 13.25 11.50 8.97 0.09 0.58 0.52 1.80 0.00 0.00 15.92 0.00 2.48 24.82 11.46 46.07 5.48 56 E7_Dd KnownBoundary 0 6.52 0.00 0.00 0.00 9.51 15.16 3.62 12.57 12.27 6.47 0.00 0.00 0.00 0.00 0.00 0.00 11.87 0.00 0.00 14.00 3.15 23.88 7.43 57 ER7g ExonRegion 0 4.53 3.21 0.00 0.00 23.94 9.23 6.62 6.40 4.38 1.45 0.00 0.00 3.78 0.00 0.00 0.00 33.88 0.00 0.00 12.39 12.14 8.92 5.77