Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RYK Gene 0 60.38 56.74 50.23 54.93 56.41 32.56 56.00 28.47 18.42 39.35 38.58 77.78 59.14 61.52 54.12 55.13 55.47 37.34 25.30 34.75 94.89 194.22 101.99 2 427044 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 296084 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 2.20 1.04 1.47 4 460933 Transcript 0 0.00 2.03 0.00 2.73 0.00 1.83 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.94 5 464879 Transcript 1 8.74 4.57 4.39 10.87 8.37 5.57 16.09 3.39 4.85 2.74 10.30 53.34 36.01 16.78 4.12 25.32 24.37 2.65 8.42 7.40 17.26 45.23 30.39 6 480381 Transcript 0 47.26 42.20 8.24 44.40 28.26 8.19 16.09 15.02 10.09 12.96 15.82 43.84 34.58 20.13 15.24 32.47 24.15 7.92 13.65 7.50 21.72 87.67 45.80 7 486725 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 481382 Transcript 0 10.44 11.49 2.73 7.28 5.21 2.21 5.07 2.22 1.57 0.88 2.57 11.05 16.94 2.85 4.62 3.73 2.25 0.22 2.31 1.62 1.03 5.76 2.30 9 472234 Transcript 0 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.09 0.00 10 473208 Transcript 0 4.33 6.70 3.03 7.27 9.73 3.45 16.15 2.70 3.87 4.96 3.57 11.39 9.56 3.29 2.87 5.85 7.62 5.15 3.92 8.74 5.30 21.33 6.53 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.82 0.00 0.00 4.26 0.00 2.74 12 E1a_E1b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1b_E1c NovelJunction 0 0.00 3.29 0.00 0.00 4.16 0.00 2.21 0.00 0.00 1.67 5.26 0.00 0.00 0.00 0.00 0.00 4.30 11.23 0.00 2.94 23.54 2.82 11.95 14 E1b_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 4.41 2.08 2.94 16 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.50 1.85 0.00 0.00 5.88 4.86 1.47 17 ER1d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.90 0.00 0.00 0.00 11.02 2.08 0.00 18 ER1e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.90 0.92 0.00 0.00 11.02 5.21 0.00 19 ER1f ExonRegion 0 7.33 9.51 8.48 3.63 5.69 2.40 7.29 4.36 1.59 10.49 13.58 2.81 2.40 38.20 14.45 25.88 25.50 17.91 8.08 14.01 83.99 52.88 52.72 20 E1c_E2a KnownJunction 1 27.71 57.49 24.39 15.42 44.91 15.39 23.76 18.77 8.16 41.39 41.43 0.00 0.00 75.99 13.97 60.50 60.50 73.83 13.65 36.94 195.77 121.18 134.36 21 I1_AR1 ActiveIntronRegion 0 20.85 18.37 11.47 7.02 8.70 5.23 11.66 5.74 1.33 7.86 2.12 3.77 7.47 0.55 5.10 10.45 5.19 5.54 11.73 9.04 3.13 0.92 7.30 22 I1_AR2 ActiveIntronRegion 0 23.81 13.46 5.75 11.07 5.80 0.00 8.29 6.19 1.37 3.37 0.69 2.99 5.03 0.66 2.18 8.42 7.66 3.23 4.32 6.21 2.52 1.26 6.82 23 ER2a ExonRegion 0 27.55 65.86 35.02 22.57 37.90 19.69 45.26 20.53 20.47 52.55 56.86 72.00 45.09 121.16 58.14 81.15 113.39 81.69 27.91 56.37 247.94 247.87 196.30 24 E2a_E3a KnownJunction 0 48.01 73.93 42.22 36.59 19.44 35.15 41.12 39.43 25.98 95.63 86.13 77.88 89.44 138.56 76.40 88.69 127.26 76.69 38.50 61.62 297.46 175.07 176.53 25 ER3a ExonRegion 1 25.76 46.00 41.45 50.62 31.41 23.55 45.94 33.24 23.41 76.68 86.50 103.26 75.88 164.39 54.69 108.51 146.96 94.29 34.66 68.34 282.21 304.05 255.05 26 E3a_E4a KnownJunction 1 39.04 66.70 67.86 73.28 76.91 17.15 58.60 37.99 37.30 102.10 111.08 136.54 117.85 208.19 81.09 149.36 183.64 89.08 47.62 88.72 266.20 476.64 270.52 27 ER4a ExonRegion 1 20.44 76.61 66.82 64.01 84.77 51.39 95.13 42.29 28.60 90.45 93.80 190.14 136.18 167.34 64.24 99.05 155.12 75.33 41.32 78.85 193.68 447.51 238.04 28 E4a_E5a KnownJunction 0 48.23 76.76 53.37 60.76 152.72 68.65 110.58 34.21 24.71 103.04 96.81 206.92 115.25 110.19 92.71 122.45 169.80 64.50 43.67 76.76 131.40 372.67 251.91 29 ER5a ExonRegion 0 32.61 93.24 52.92 67.56 83.59 49.48 96.48 47.92 24.91 110.82 110.39 220.48 176.92 143.28 72.16 158.79 158.57 99.74 65.42 86.21 142.06 604.57 291.11 30 E5a_E6a KnownJunction 0 41.71 116.89 64.37 78.71 54.75 47.59 118.71 61.78 21.59 108.63 126.77 198.21 268.16 206.72 99.02 186.11 165.68 116.73 101.65 100.41 152.78 941.71 418.45 31 ER6a ExonRegion 0 57.51 101.55 76.89 73.55 67.13 46.26 106.47 53.96 38.52 110.28 124.48 270.13 207.20 182.69 83.62 133.75 160.08 116.04 76.58 88.26 290.80 599.55 258.22 32 E6_Da KnownBoundary 0 3.70 5.85 11.53 12.32 11.29 2.90 9.67 3.16 5.61 3.95 14.21 84.78 32.63 7.42 6.30 18.29 19.54 2.24 0.00 14.45 28.17 42.99 39.44 33 E6a_E7b KnownJunction 0 134.17 154.58 80.45 83.57 71.56 74.73 134.21 67.16 46.24 122.41 100.71 262.74 175.80 155.51 113.23 180.47 207.39 146.37 117.56 85.07 374.56 743.37 339.83 34 ER6b ExonRegion 1 8.74 4.57 4.39 10.87 8.37 5.57 16.09 3.39 4.85 2.74 10.30 53.34 36.01 16.78 4.12 25.32 24.37 2.65 8.42 7.40 17.26 45.23 30.39 35 E6_Db NovelBoundary 0 3.26 3.35 0.00 7.89 26.40 10.62 25.44 14.66 6.13 1.40 16.58 48.02 68.50 19.25 8.90 15.89 47.78 5.80 4.80 21.09 27.24 47.21 21.77 36 I6 Intron 0 10.58 8.47 3.96 13.18 8.89 11.12 16.64 5.29 5.35 4.77 14.66 38.34 28.94 18.83 6.56 27.44 27.39 6.20 6.78 13.20 20.68 41.98 36.87 37 I6_SR1 SilentIntronRegion 0 7.84 3.02 0.00 3.41 6.48 3.58 9.16 7.10 3.34 2.94 7.52 55.74 53.72 8.88 0.63 23.78 35.33 4.04 5.08 2.79 4.92 31.25 27.58 38 I6_AR1 ActiveIntronRegion 0 8.43 2.85 2.98 8.66 7.43 11.81 16.15 5.83 5.70 7.10 18.14 53.74 57.55 18.60 7.89 39.21 38.77 7.67 9.88 16.10 24.01 60.56 44.28 39 I6_SR2 SilentIntronRegion 0 7.38 5.03 2.75 10.49 7.34 10.80 16.29 4.29 5.41 3.84 16.13 38.12 24.12 24.61 4.95 34.24 34.39 9.96 8.15 15.86 33.78 38.83 47.14 40 I6_AR2 ActiveIntronRegion 0 4.22 4.67 3.91 9.65 6.13 5.61 13.13 3.19 3.55 5.08 8.98 49.35 28.55 12.79 2.90 13.54 14.35 2.38 3.06 9.99 10.60 36.72 21.31 41 I6_SR3 SilentIntronRegion 0 14.75 11.39 5.19 17.97 11.39 13.44 18.55 6.45 5.90 4.71 14.63 30.38 24.83 16.43 8.62 22.84 22.12 4.07 6.26 11.82 12.85 41.30 31.83 42 I6_AR3 ActiveIntronRegion 0 33.00 62.39 9.23 19.55 12.83 6.46 15.09 7.23 4.14 8.21 9.97 33.60 15.35 12.11 12.30 19.72 17.10 0.00 0.00 6.60 3.81 44.96 18.29 43 E7_Aa NovelBoundary 0 68.75 88.87 7.98 51.58 60.61 26.35 20.27 5.75 18.26 13.89 7.21 54.32 52.11 12.77 14.34 26.15 4.39 3.90 4.71 14.64 6.12 87.26 32.78 44 ER7a ExonRegion 0 47.26 42.20 8.24 44.40 28.26 8.19 16.09 15.02 10.09 12.96 15.82 43.84 34.58 20.13 15.24 32.47 24.15 7.92 13.65 7.50 21.72 87.67 45.80 45 E7_Ab KnownBoundary 0 94.98 71.37 8.46 69.52 46.35 18.57 18.95 23.49 10.30 7.90 16.16 44.26 53.08 25.78 5.44 39.39 25.62 18.12 33.41 17.58 28.23 87.75 54.46 46 ER7b ExonRegion 0 174.10 230.59 87.75 113.79 118.72 74.91 114.19 70.07 42.33 101.86 113.98 273.06 183.66 195.25 108.01 190.22 162.70 148.80 99.22 90.08 411.81 622.39 315.07 47 E7a_E8a KnownJunction 1 92.61 132.02 55.62 45.48 59.59 20.39 86.60 52.33 23.06 59.12 65.02 94.38 76.46 103.89 28.56 63.40 68.44 67.53 38.40 79.58 179.71 245.91 124.97 48 E7a_E8b KnownJunction 0 71.35 94.98 22.41 36.39 30.14 35.43 49.68 25.06 12.33 25.52 50.59 69.92 41.56 67.40 16.44 41.36 35.06 29.80 60.52 27.55 112.19 204.58 92.28 49 E8_Ab NovelBoundary 0 37.04 46.37 24.27 21.58 12.90 15.50 51.76 14.66 4.60 19.15 6.05 23.11 24.84 25.02 9.39 19.74 45.72 18.12 3.76 35.09 49.36 97.12 77.85 50 ER8a ExonRegion 0 72.17 118.35 48.52 45.25 48.70 27.87 78.38 45.46 19.76 53.79 57.60 102.61 79.73 110.44 47.58 71.93 89.12 65.04 35.99 71.28 172.77 262.94 148.89 51 ER8b ExonRegion 0 138.89 189.68 89.28 89.55 108.32 83.98 152.73 51.65 36.18 70.44 95.81 217.52 196.66 164.37 88.64 133.39 154.00 88.60 49.92 104.99 319.35 454.46 249.26 52 E8_Ac KnownBoundary 0 163.88 191.68 99.64 115.54 159.00 107.38 181.99 42.22 34.75 68.79 118.35 215.47 292.19 153.98 133.14 168.59 189.15 96.75 55.53 115.69 349.91 473.76 240.64 53 ER8c ExonRegion 0 129.36 164.11 102.47 146.32 160.94 93.36 167.31 58.43 33.07 90.33 115.31 291.75 251.79 165.93 104.45 183.25 142.78 88.75 63.99 102.38 241.91 597.16 325.79 54 E8a_E9a KnownJunction 0 225.89 200.36 154.58 203.24 266.13 137.82 215.47 97.88 44.96 132.24 93.55 322.15 203.72 211.55 129.67 224.21 212.34 86.55 61.65 132.05 196.70 829.71 413.93 55 ER9a ExonRegion 0 173.60 167.22 131.20 170.24 190.99 111.65 189.22 79.49 45.91 115.49 131.46 258.67 213.80 205.39 150.70 188.95 199.27 63.89 69.09 108.88 190.66 828.02 332.62 56 E9a_E10b KnownJunction 0 287.98 181.81 132.93 160.69 129.88 119.02 211.45 87.36 59.32 141.37 131.93 280.29 317.67 204.90 197.54 188.67 267.60 48.25 100.24 102.65 235.93 793.04 248.66 57 I9_AR2 ActiveIntronRegion 1 2.12 2.59 3.68 6.44 12.41 0.00 9.63 0.00 0.00 3.44 1.93 37.78 19.61 0.00 0.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 58 I9_AR3 ActiveIntronRegion 1 2.12 4.07 5.31 6.81 21.41 0.00 10.59 0.00 1.03 3.44 1.93 31.03 23.45 0.00 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 2.94 59 E10_Aa NovelBoundary 0 34.52 2.96 6.98 8.79 0.00 2.90 5.17 2.55 1.53 4.78 0.00 13.35 0.00 0.00 0.00 0.00 4.49 0.00 0.00 2.75 5.37 3.12 0.00 60 ER10a ExonRegion 0 10.44 11.49 2.73 7.28 5.21 2.21 5.07 2.22 1.57 0.88 2.57 11.05 16.94 2.85 4.62 3.73 2.25 0.22 2.31 1.62 1.03 5.76 2.30 61 E10_Ab KnownBoundary 0 17.41 9.74 1.83 8.56 3.23 4.54 5.79 0.00 0.00 0.00 7.00 6.30 19.64 10.12 0.00 12.30 9.54 2.03 0.00 5.50 0.00 8.02 6.83 62 ER10b ExonRegion 0 220.67 179.44 109.64 153.83 134.91 110.61 184.66 84.51 55.26 123.53 144.20 271.16 294.98 158.61 151.55 182.16 227.76 53.00 90.20 90.09 246.12 650.99 309.74 63 E10_Ac KnownBoundary 0 236.71 214.30 113.95 167.94 143.29 135.09 208.49 94.02 60.99 125.85 132.45 276.24 344.30 140.15 111.87 169.02 196.45 88.83 82.07 94.92 267.00 577.98 371.84 64 E10a_E11b KnownJunction 0 193.81 177.99 138.23 146.20 122.24 92.28 125.20 70.77 33.39 108.68 82.34 292.90 213.95 147.57 80.85 157.39 144.93 71.96 35.20 57.65 143.26 453.43 190.45 65 E10a_E12a KnownJunction 0 25.04 10.66 1.83 10.42 7.56 0.00 9.45 0.00 8.33 9.32 15.69 12.30 6.82 9.83 6.30 21.87 12.16 4.81 4.71 2.81 24.71 28.17 37.47 66 ER10c ExonRegion 0 185.30 165.77 115.46 154.05 120.49 102.63 140.17 77.00 52.27 112.66 114.73 272.20 254.77 139.20 93.31 162.12 160.25 75.58 61.65 66.51 208.57 507.24 289.31 67 ER11a ExonRegion 0 4.33 6.70 3.03 7.27 9.73 3.45 16.15 2.70 3.87 4.96 3.57 11.39 9.56 3.29 2.87 5.85 7.62 5.15 3.92 8.74 5.30 21.33 6.53 68 E11_Ab KnownBoundary 0 14.22 2.89 0.00 5.89 0.00 0.00 19.52 3.33 9.26 5.78 2.68 12.30 13.64 0.00 6.30 0.00 0.00 1.78 4.80 3.26 3.03 21.74 17.33 69 ER11b ExonRegion 0 207.64 163.24 144.07 160.55 160.38 111.33 138.92 82.85 59.89 119.30 146.43 289.91 232.62 208.40 172.98 198.21 223.81 113.80 103.21 106.95 347.72 730.62 330.75 70 E11_Da NovelBoundary 0 0.00 0.00 3.08 5.46 28.78 0.00 10.78 2.34 1.48 0.00 5.16 0.00 18.99 0.00 0.00 0.00 4.11 0.00 0.00 0.00 3.15 8.39 0.00 71 E11a_E12a KnownJunction 0 192.48 147.34 190.18 199.44 133.62 123.05 132.27 62.68 70.05 128.19 162.51 306.40 184.89 205.13 176.15 262.67 241.98 167.35 159.63 130.20 415.14 639.95 386.27 72 ER12a ExonRegion 0 168.99 109.61 184.13 173.69 126.88 109.06 143.72 88.36 72.73 125.97 143.56 306.17 247.68 228.59 167.24 210.64 201.02 157.61 100.14 107.49 509.40 568.48 382.86 73 E12a_E13a KnownJunction 0 160.18 173.39 224.62 208.73 139.56 108.91 149.58 102.07 74.22 163.64 163.57 237.08 195.60 251.81 321.65 251.05 296.40 184.38 158.78 139.79 648.91 715.02 418.71 74 E13_Aa NovelBoundary 1 12.08 9.21 5.68 3.06 23.17 2.38 9.98 5.54 1.79 2.85 0.00 12.00 0.00 5.06 6.30 3.50 38.71 5.84 14.12 8.37 11.92 10.04 8.11 75 ER13a ExonRegion 0 155.85 134.00 189.64 179.26 102.57 104.08 122.99 83.36 73.88 137.65 129.71 216.60 173.39 229.49 204.36 268.03 235.16 203.22 126.79 132.01 569.49 719.29 529.13 76 E13_Da KnownBoundary 0 269.46 131.10 221.70 186.22 147.11 98.64 156.03 80.75 73.76 122.73 124.98 195.36 116.39 308.61 193.46 286.42 213.84 217.05 120.10 132.31 588.74 729.96 544.70 77 ER13b ExonRegion 0 192.51 139.41 194.35 160.04 152.66 112.80 140.55 80.41 68.67 119.24 145.67 178.25 161.11 272.44 197.62 223.35 241.67 186.21 102.61 119.47 593.20 524.98 455.52 78 E13_Db NovelBoundary 0 6.96 3.35 8.07 0.00 0.00 0.00 4.15 3.74 1.65 1.61 0.00 0.00 0.00 2.24 17.80 8.54 0.00 4.60 18.07 5.62 4.94 4.96 4.35 79 E13b_E14a KnownJunction 0 143.58 138.79 171.25 175.37 188.62 150.03 113.50 55.24 49.62 107.80 94.97 156.65 168.17 261.64 165.40 145.18 159.79 187.83 76.99 96.32 474.33 396.49 390.19 80 E13b_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81 I13_SR2 SilentIntronRegion 0 2.37 4.17 3.37 6.09 6.38 0.95 19.93 2.61 1.62 4.09 2.37 9.49 9.28 3.80 2.09 3.94 6.52 5.32 0.00 4.38 12.37 13.53 5.95 82 E14_Aa NovelBoundary 0 3.41 6.18 6.39 8.72 3.74 2.61 10.51 7.68 5.32 0.00 4.69 0.00 0.00 2.47 4.82 4.27 0.00 26.03 0.00 2.75 25.21 6.12 7.51 83 ER14a ExonRegion 0 171.97 105.63 183.44 185.37 118.73 119.02 128.45 87.22 60.53 102.28 117.78 162.81 137.92 208.83 184.40 273.76 182.13 258.87 110.33 113.58 424.32 581.92 492.71 84 E14_Da KnownBoundary 0 342.36 159.38 229.59 238.06 238.29 129.02 249.52 107.78 73.58 124.85 186.78 153.35 143.01 320.86 207.55 296.42 284.90 252.33 166.78 171.62 587.13 629.79 681.97 85 ER14b ExonRegion 0 182.34 126.70 189.08 191.01 189.05 94.68 163.97 91.08 63.31 115.56 161.06 117.55 119.29 261.52 213.62 237.19 211.54 215.02 115.09 126.92 559.89 481.25 536.77 86 E14b_E15a KnownJunction 0 162.18 114.32 185.12 191.38 185.99 119.36 126.75 84.45 59.23 126.09 144.56 150.80 141.87 294.78 279.13 265.74 139.41 171.95 122.45 127.07 431.14 534.63 517.56 87 ER15a ExonRegion 0 196.15 161.74 156.64 158.64 173.54 89.26 138.02 84.11 41.53 95.14 72.89 153.93 99.09 117.77 166.16 92.19 81.64 52.22 41.89 62.37 119.51 412.09 174.71 88 ER15b ExonRegion 0 0.00 2.03 0.00 2.73 0.00 1.83 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.94 89 I15_AR1 ActiveIntronRegion 0 11.48 11.53 7.07 11.17 16.79 8.63 16.44 9.85 3.76 6.87 0.88 4.69 1.10 2.90 1.29 2.92 6.60 4.50 3.77 9.02 8.44 16.77 17.65 90 I15_SR1 SilentIntronRegion 0 17.00 16.55 9.25 18.61 13.54 10.78 24.57 14.48 3.91 14.79 2.69 5.31 1.28 2.39 3.82 4.77 2.60 6.41 14.14 9.64 21.87 37.53 32.79 91 I15_SR2 SilentIntronRegion 0 10.94 9.57 9.44 13.06 18.72 7.37 8.82 6.21 2.96 11.97 0.44 1.99 0.00 0.44 1.65 3.76 3.41 10.76 6.59 9.78 25.05 15.80 21.91 92 ER16a ExonRegion 0 0.00 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00