Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAIM Gene 0 16.38 49.08 45.39 42.17 42.63 30.29 27.31 39.84 38.24 33.92 41.52 24.68 45.09 49.83 54.45 27.10 23.19 30.87 17.12 31.58 7.09 20.56 9.05 2 470889 Transcript 0 2.16 12.83 7.04 14.26 11.40 7.61 8.43 8.66 10.19 7.60 7.06 2.94 8.40 8.76 6.68 5.99 4.51 17.01 6.01 9.36 2.77 2.68 3.13 3 338446 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 311126 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 360570 Transcript 0 1.31 3.17 26.98 14.45 18.76 4.69 10.60 8.34 13.00 18.03 0.00 0.00 1.79 0.00 0.00 0.00 0.78 13.97 7.60 30.43 0.00 0.00 0.00 6 393035 Transcript 1 7.11 0.00 13.01 1.40 4.07 0.00 0.00 4.93 2.69 8.22 103.82 6.75 32.95 82.29 73.31 29.99 42.17 3.77 3.95 6.01 11.55 18.68 16.82 7 491175 Transcript 0 4.50 2.08 1.97 0.49 0.52 2.30 2.06 1.07 1.62 2.07 2.00 0.00 3.41 1.76 1.71 1.81 3.02 4.86 0.61 6.04 0.10 0.00 0.00 8 393034 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 393036 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 464668 Transcript 0 0.00 5.08 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.41 0.15 0.00 0.00 1.30 0.00 0.00 0.00 0.80 0.00 0.00 0.00 11 479848 Transcript 0 0.00 6.10 0.00 0.08 2.68 0.00 0.66 0.00 0.00 0.00 0.00 1.92 0.52 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 1.04 0.00 12 464912 Transcript 0 3.69 26.06 7.73 19.60 25.77 4.17 8.58 11.56 14.43 3.38 1.75 7.00 12.38 4.00 4.50 0.88 1.82 1.37 2.85 7.35 0.46 6.43 1.36 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.34 0.00 0.00 0.00 0.00 0.29 0.00 0.00 0.00 1.62 0.73 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 14 ER1b ExonRegion 0 5.93 2.99 1.00 4.97 2.94 0.00 3.97 1.23 0.98 3.93 0.64 0.00 0.00 3.21 6.63 0.00 1.81 4.24 0.00 0.00 0.99 4.60 11.88 15 E1_Ac KnownBoundary 0 9.85 3.35 0.00 6.29 0.00 0.00 6.23 1.77 0.00 8.00 2.68 0.00 0.00 4.41 4.45 0.00 0.00 10.99 0.00 0.00 8.09 11.08 8.19 16 ER1c ExonRegion 1 18.84 14.61 5.60 6.18 28.03 70.52 20.18 2.40 5.99 11.30 32.18 0.00 0.00 58.78 36.66 35.88 22.30 19.82 12.11 17.88 8.96 14.82 7.82 17 E1_Ad KnownBoundary 0 43.34 20.06 20.05 17.78 39.39 73.42 30.91 11.87 20.28 36.75 42.59 0.00 0.00 81.46 82.95 49.82 44.23 75.03 18.35 39.05 8.03 11.21 6.83 18 ER1d ExonRegion 1 23.06 17.10 28.75 13.90 32.82 29.13 23.92 11.32 19.10 32.19 68.55 4.28 13.96 66.68 64.70 49.97 37.58 46.49 16.78 25.80 25.70 24.95 21.51 19 E1a_E3a KnownJunction 0 0.00 0.00 1.48 1.86 0.00 2.38 0.00 1.73 4.43 10.93 12.95 0.00 0.00 2.47 0.00 6.92 0.00 4.68 0.00 0.00 3.15 0.00 0.00 20 E1a_E4a KnownJunction 0 0.00 0.00 20.22 10.06 17.06 0.00 4.15 7.02 11.11 14.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.09 4.14 25.69 0.00 0.00 0.00 21 E1a_E5d KnownJunction 1 7.11 0.00 13.01 1.40 4.07 0.00 0.00 4.93 2.69 8.22 103.82 6.75 32.95 82.29 73.31 29.99 42.17 3.77 3.95 6.01 11.55 18.68 16.82 22 ER2a ExonRegion 0 1.89 0.87 2.10 0.98 1.05 2.28 1.86 0.00 3.23 2.48 1.31 0.00 0.00 1.04 3.42 0.02 1.27 5.61 1.22 3.26 0.20 0.00 0.00 23 E2_Ab KnownBoundary 0 3.11 2.63 0.00 3.16 0.00 9.31 2.16 0.00 7.75 1.32 7.37 0.00 0.00 7.12 29.17 0.00 0.00 6.88 0.00 0.00 2.59 0.00 0.00 24 ER2b ExonRegion 0 11.41 12.45 0.76 3.43 12.26 12.29 11.93 2.27 2.52 2.71 2.30 0.00 2.66 14.68 26.82 20.80 12.53 1.30 3.83 2.67 4.97 2.34 0.00 25 E2a_E5d KnownJunction 0 12.22 0.00 1.80 3.13 11.80 0.00 0.00 4.72 1.79 3.17 2.68 0.00 0.00 9.48 30.04 14.78 11.03 0.00 4.14 6.01 3.15 4.96 0.00 26 I2_AR2 ActiveIntronRegion 0 1.12 10.73 11.95 11.56 9.19 3.39 10.29 16.61 13.11 5.67 4.49 4.91 8.57 4.35 8.10 5.56 4.72 18.37 8.03 20.51 2.33 2.23 3.98 27 I2_SR2 SilentIntronRegion 0 2.47 24.86 6.47 5.73 7.00 0.58 8.39 9.63 12.80 4.56 5.07 6.84 10.25 1.90 5.88 4.46 2.63 5.26 5.63 13.34 1.18 1.47 1.79 28 E3_Aa NovelBoundary 0 3.78 15.06 1.30 4.06 0.00 0.00 11.48 4.07 18.81 4.03 0.00 13.80 13.64 5.47 0.00 12.39 17.02 4.27 9.60 20.77 0.00 0.00 0.00 29 ER3a ExonRegion 0 21.13 36.71 38.81 39.19 13.82 20.81 25.51 38.99 58.07 39.82 20.21 27.15 33.31 16.61 28.92 22.87 14.73 53.92 25.42 38.44 13.95 9.78 17.81 30 E3_Da NovelBoundary 1 6.59 21.18 6.98 22.11 7.81 5.62 6.49 12.90 21.70 9.62 2.37 18.91 32.79 0.00 19.28 20.59 4.39 36.35 8.19 21.09 2.72 2.82 0.00 31 E3a_E4a NovelJunction 0 0.00 14.87 6.42 12.25 0.00 23.62 10.42 14.21 17.91 10.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.29 13.55 0.00 0.00 0.00 0.00 32 E3a_E5d KnownJunction 0 0.00 12.37 1.42 3.66 0.00 0.00 0.00 0.00 4.89 2.79 17.16 6.00 13.64 2.83 0.00 0.00 0.00 0.00 0.00 0.00 9.08 0.00 4.18 33 I3 Intron 0 1.43 17.28 7.58 11.67 11.02 5.92 11.09 7.08 15.78 7.48 2.11 4.84 12.56 2.27 3.60 3.06 2.89 7.48 6.61 13.14 0.95 1.79 1.35 34 I3_SR1 SilentIntronRegion 0 1.62 8.32 9.34 12.72 8.89 4.45 13.37 4.28 15.29 6.12 2.47 1.82 10.09 2.61 4.76 3.42 3.80 11.16 9.36 13.87 0.56 0.80 1.50 35 I3_AR2 ActiveIntronRegion 0 0.70 24.05 4.63 10.29 8.39 2.72 7.15 6.06 14.87 4.20 3.83 6.12 15.63 1.32 1.96 1.96 2.18 5.11 8.41 10.65 1.82 2.75 2.48 36 I3_AR3 ActiveIntronRegion 0 1.01 47.21 7.39 6.54 5.43 4.22 9.57 4.24 16.18 6.11 0.00 5.40 16.35 2.08 3.29 0.71 3.93 3.89 4.26 13.61 0.67 1.57 0.60 37 I3_SR2 SilentIntronRegion 0 1.53 15.22 7.69 12.15 12.22 6.74 11.36 7.94 15.96 8.27 2.02 5.13 12.25 2.35 3.65 3.36 2.74 7.50 6.13 13.31 0.93 1.86 1.25 38 E4_Aa NovelBoundary 1 0.00 22.36 7.21 14.12 8.23 8.12 7.99 6.20 18.32 7.55 0.00 18.16 6.66 4.59 5.19 4.36 0.00 1.62 0.00 6.20 0.00 0.00 8.71 39 E4_Ab NovelBoundary 0 6.96 15.92 44.11 27.57 40.66 20.95 38.47 21.03 29.22 20.87 0.00 0.00 0.00 0.00 0.00 0.00 8.32 23.17 11.95 48.19 0.00 0.00 0.00 40 ER4a ExonRegion 0 2.61 6.34 33.73 18.84 20.46 9.38 17.06 9.66 14.89 21.66 0.00 0.00 3.59 0.00 0.00 0.00 1.55 21.85 11.06 35.17 0.00 0.00 0.00 41 ER4b ExonRegion 0 5.46 32.11 53.72 30.59 43.19 21.15 30.27 35.09 34.32 41.80 2.07 4.23 7.74 1.62 5.26 0.00 3.30 49.59 26.96 46.71 0.00 0.00 0.00 42 E4_Da NovelBoundary 0 3.63 15.19 1.18 8.06 22.92 20.22 26.14 8.79 19.47 3.84 7.79 0.00 5.84 7.24 0.00 0.00 4.68 5.39 0.00 11.44 0.00 2.39 0.00 43 E4a_E5d KnownJunction 0 6.67 58.02 67.47 41.72 60.02 27.54 23.98 52.53 48.00 59.88 2.05 0.00 0.00 0.00 0.00 0.00 0.00 61.89 27.48 44.23 0.00 0.00 0.00 44 E5_Aa NovelBoundary 0 3.78 23.42 2.93 11.02 4.33 5.68 2.25 6.41 11.55 6.34 5.37 6.30 14.61 0.00 0.00 0.00 0.00 2.57 4.80 11.63 0.00 2.63 0.00 45 E5_Ab NovelBoundary 0 3.78 33.48 7.04 11.52 0.00 11.19 4.20 7.19 7.18 4.97 0.00 0.00 8.28 0.00 4.45 12.30 4.58 0.00 0.00 9.14 0.00 0.00 4.10 46 ER5a ExonRegion 0 0.00 10.17 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.81 0.29 0.00 0.00 2.60 0.00 0.00 0.00 1.60 0.00 0.00 0.00 47 ER5b ExonRegion 0 0.00 23.00 0.00 0.00 5.35 0.00 2.38 0.00 0.00 0.00 0.00 8.10 4.69 0.00 0.00 2.82 0.00 0.00 3.19 2.13 0.00 1.82 0.00 48 E5_Da NovelBoundary 0 3.78 39.01 0.00 1.90 7.30 0.00 2.08 0.00 5.27 0.00 2.68 5.85 0.00 0.00 0.00 0.00 0.00 0.00 4.05 11.25 0.00 5.45 0.00 49 E5a_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E5_Db NovelBoundary 0 0.00 29.07 3.22 8.79 32.60 13.63 4.02 12.45 7.35 4.11 0.00 7.65 6.82 0.00 0.00 8.12 0.00 0.00 4.80 3.26 0.00 0.00 0.00 51 E5b_E5d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER5c ExonRegion 0 0.00 12.20 0.00 0.15 5.35 0.00 1.32 0.00 0.00 0.00 0.00 3.85 1.04 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 2.08 0.00 53 ER5d ExonRegion 0 0.00 7.46 0.00 2.42 3.57 0.00 1.03 2.30 0.69 0.00 1.93 0.00 1.56 0.18 0.00 0.00 0.00 0.00 1.06 1.42 0.00 3.01 0.00 54 ER5e ExonRegion 0 3.69 26.06 7.73 19.60 25.77 4.17 8.58 11.56 14.43 3.38 1.75 7.00 12.38 4.00 4.50 0.88 1.82 1.37 2.85 7.35 0.46 6.43 1.36 55 E5_Ad KnownBoundary 1 0.00 50.98 2.96 20.44 6.88 12.32 4.02 22.10 21.82 4.57 0.00 6.30 26.62 9.77 0.00 4.36 0.00 0.00 8.85 18.09 2.72 5.76 0.00 56 ER5f ExonRegion 1 29.26 157.57 106.69 73.39 100.93 95.57 53.10 86.93 81.57 69.80 154.85 39.10 87.55 173.77 145.57 106.79 88.10 76.40 53.50 82.38 23.71 44.62 17.42 57 E5c_E6a KnownJunction 1 81.94 266.86 115.99 94.13 148.98 151.56 72.96 114.06 77.46 72.80 111.66 29.86 134.41 153.34 181.10 118.00 70.31 38.30 37.74 105.40 18.66 46.41 19.55 58 E6_Aa NovelBoundary 0 0.00 24.60 0.00 5.06 0.00 18.23 2.25 2.55 1.79 1.24 0.00 0.00 0.00 2.47 4.45 4.02 0.00 2.20 0.00 0.00 0.00 0.00 0.00 59 ER6a ExonRegion 0 57.54 230.48 167.32 115.53 157.73 110.42 92.77 117.48 109.39 94.87 156.50 100.24 186.13 155.45 193.23 81.56 92.79 35.97 42.38 89.05 10.18 73.93 23.17 60 E6_Da KnownBoundary 0 87.72 147.14 190.65 150.26 231.07 63.37 136.73 144.42 132.55 100.06 140.40 120.64 129.86 217.79 181.10 102.62 79.20 39.17 54.31 95.75 8.34 93.56 12.46 61 ER6b ExonRegion 0 56.25 120.94 217.10 132.43 163.31 110.89 94.05 158.44 124.53 126.01 168.67 97.59 250.57 238.80 254.38 93.09 113.86 36.68 36.87 109.17 3.80 83.48 17.05 62 E6_Db NovelBoundary 0 63.34 152.28 225.57 103.38 201.36 119.53 98.04 101.12 122.60 109.25 173.73 92.13 203.72 201.43 200.88 70.92 103.79 37.52 33.13 77.15 7.91 87.69 10.76 63 E6b_E7a KnownJunction 0 7.11 3.29 1.83 0.00 0.00 2.33 2.25 2.14 0.00 1.67 2.68 0.00 6.82 2.47 0.00 3.59 4.77 4.10 0.00 8.82 0.00 0.00 0.00 64 E6_Dc NovelBoundary 0 7.56 12.63 1.83 7.56 0.00 0.00 4.50 6.98 1.79 1.67 0.00 5.85 6.82 2.47 0.00 0.00 9.54 4.27 4.80 24.80 0.00 0.00 4.10 65 E6c_E7a KnownJunction 0 83.05 193.58 213.71 93.83 213.67 96.42 143.40 116.03 113.89 122.17 175.41 144.80 327.09 241.33 300.88 96.30 90.23 21.22 42.45 100.67 5.87 88.97 20.15 66 ER6c ExonRegion 0 62.97 162.26 226.64 103.86 201.24 112.55 108.79 117.82 123.00 123.05 181.21 144.50 274.56 231.10 233.55 88.54 106.73 35.18 34.77 95.04 6.89 88.72 10.65 67 I6 Intron 0 3.00 16.49 8.04 15.60 13.54 7.24 10.79 11.79 11.87 6.25 6.79 6.11 14.53 6.56 6.51 6.44 5.55 19.27 6.15 13.20 1.97 3.57 4.47 68 I6_SR1 SilentIntronRegion 0 3.01 16.50 8.05 15.61 13.56 7.25 10.80 11.80 11.88 6.26 6.79 6.12 14.54 6.56 6.51 6.44 5.56 19.28 6.16 13.21 1.97 3.57 4.47 69 E7_Aa NovelBoundary 0 7.11 71.63 10.35 27.50 39.47 30.95 47.83 35.24 22.19 25.95 7.11 7.50 0.00 4.59 0.00 7.86 0.00 4.68 4.05 8.95 0.00 5.82 7.77 70 ER7a ExonRegion 0 71.35 225.05 196.14 109.79 197.11 100.49 123.69 127.21 115.30 122.06 215.15 206.76 285.05 246.14 280.26 122.72 103.87 32.11 39.78 113.76 13.27 102.19 13.64 71 E7_Da KnownBoundary 0 24.52 70.84 82.08 59.60 60.87 39.01 47.61 54.01 44.99 47.49 57.80 49.97 56.00 73.64 67.62 34.52 26.55 15.96 14.68 50.88 4.57 18.68 0.00 72 E7_Db KnownBoundary 0 7.11 9.01 1.42 16.31 7.64 6.70 0.00 11.25 12.07 14.29 7.21 0.00 0.00 0.00 0.00 0.00 3.74 4.10 0.00 13.36 0.00 0.00 0.00 73 E7b_E8a KnownJunction 0 74.98 280.21 175.13 94.76 152.04 97.78 71.15 107.53 91.17 94.63 231.90 111.64 119.31 270.29 179.74 121.76 98.83 25.83 41.32 90.38 14.09 114.94 20.49 74 ER7b ExonRegion 0 70.69 287.95 205.62 128.93 193.72 98.29 105.39 143.12 114.87 118.59 256.30 122.96 164.15 277.40 225.72 130.18 116.19 42.13 30.58 122.98 18.07 115.01 14.68 75 ER7c ExonRegion 0 3.69 27.11 13.77 31.18 19.34 7.78 12.98 25.49 25.98 22.08 15.42 10.36 26.19 20.04 6.21 12.24 8.31 26.68 14.23 24.12 3.82 5.56 5.57 76 E7_Dc KnownBoundary 0 10.52 29.93 17.80 26.90 23.94 13.46 13.07 8.01 19.18 15.85 4.63 6.30 0.00 19.60 0.00 3.67 8.42 22.38 4.80 27.04 8.90 0.00 4.35 77 ER7d ExonRegion 0 4.32 25.65 14.08 28.52 21.47 15.21 16.86 17.31 20.38 14.92 14.11 5.88 16.80 15.90 12.63 11.98 9.02 33.09 12.01 18.72 5.54 5.35 6.25 78 E7_Dd NovelBoundary 1 32.75 26.38 7.27 13.15 4.33 20.67 13.91 4.52 10.65 7.01 9.48 26.41 41.88 20.13 26.33 17.17 21.51 18.53 27.01 26.14 11.80 22.60 3.07 79 I7 Intron 0 14.13 42.29 24.63 43.87 33.81 14.22 18.93 21.82 15.18 15.32 10.74 8.70 16.23 10.77 11.34 10.39 6.36 20.26 7.85 20.02 2.76 6.82 5.79 80 I7_SR1 SilentIntronRegion 0 13.52 42.92 23.89 42.26 33.57 14.53 19.88 21.14 15.31 14.50 10.81 8.29 14.43 11.55 10.98 10.17 6.88 22.72 8.29 20.96 2.90 6.62 6.53 81 I7_AR2 ActiveIntronRegion 0 19.45 41.14 31.70 58.44 38.10 13.16 13.79 28.22 15.44 22.18 11.05 12.20 30.02 6.24 14.75 12.73 3.30 4.79 5.41 15.06 2.03 8.70 1.12 82 E8_Aa NovelBoundary 0 27.71 64.13 67.00 71.59 81.83 11.02 37.41 32.78 26.36 23.75 10.69 6.15 12.99 14.36 13.35 4.36 9.07 11.61 8.75 13.93 3.15 5.39 4.18 83 ER8a ExonRegion 0 70.20 195.08 199.78 130.64 143.34 76.47 71.98 159.27 115.70 122.33 201.83 73.23 156.33 234.82 283.87 92.80 87.74 24.42 38.65 88.31 10.56 99.21 16.12 84 E8_Da KnownBoundary 0 49.34 68.87 158.89 105.08 198.05 136.51 89.12 184.09 113.37 121.71 119.71 110.14 193.33 208.43 251.19 76.99 51.52 19.81 40.57 54.46 2.35 85.79 8.02 85 ER8b ExonRegion 0 33.92 52.09 111.75 93.65 95.82 49.53 39.85 107.69 71.26 76.40 62.28 85.81 104.57 97.08 140.57 33.11 24.32 9.93 15.41 38.83 2.60 61.90 8.60 86 ER8c ExonRegion 0 3.02 8.13 5.08 7.79 8.41 2.88 3.03 4.20 3.71 5.73 1.93 7.42 7.37 1.62 3.32 4.67 0.00 1.06 0.00 6.99 0.00 3.27 0.00