Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PLOD2 Gene 0 17.69 34.82 21.74 5.08 9.98 7.16 20.50 10.87 4.21 45.79 0.67 43.45 89.08 0.22 17.36 0.04 57.66 2.45 0.42 8.52 22.54 276.02 109.87 2 469350 Transcript 0 0.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 360060 Transcript 0 6.67 42.56 5.20 3.36 0.00 0.00 0.00 0.00 0.00 27.99 0.00 26.56 33.44 0.00 6.06 0.00 32.26 0.00 0.00 8.63 0.00 42.92 6.83 4 282903 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 494950 Transcript 0 0.00 0.00 0.01 0.00 0.00 0.00 0.01 0.00 0.00 1.33 0.00 0.02 4.02 0.00 0.00 0.00 0.91 0.00 0.00 0.02 0.01 2.15 0.00 6 480704 Transcript 0 0.59 0.01 0.09 0.00 0.00 0.00 0.38 0.00 0.00 3.39 0.00 2.07 0.00 0.00 0.00 0.00 5.37 0.00 0.00 0.57 0.00 8.54 0.83 7 460520 Transcript 0 0.10 1.88 0.33 1.00 0.15 0.09 1.59 0.97 0.51 1.74 0.00 4.45 5.54 0.00 0.14 0.00 7.95 0.07 0.03 1.34 0.84 12.32 6.35 8 478436 Transcript 0 1.31 4.18 1.10 0.29 0.85 0.90 2.93 1.03 0.85 5.86 0.29 6.58 5.54 0.13 0.82 0.12 4.31 0.47 0.12 2.74 1.53 17.36 5.69 9 461497 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 475505 Transcript 0 1.08 6.33 1.35 0.53 0.54 0.78 0.89 0.73 0.03 4.39 0.00 2.38 1.74 0.00 0.23 0.00 2.73 0.02 0.00 0.04 1.05 9.42 1.07 11 495700 Transcript 0 14.82 12.71 13.48 4.43 2.68 2.29 8.94 5.19 1.85 26.95 0.97 14.07 25.80 0.00 13.06 0.00 47.86 3.23 0.00 7.98 12.67 196.37 93.24 12 IG29_AR3 ActiveIntergenicRegion 0 23.28 2.03 0.00 0.00 2.68 0.00 0.00 0.00 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 2.08 0.00 13 ER1a ExonRegion 0 1.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 0.93 1.28 0.58 0.13 0.15 1.87 1.31 1.59 0.64 4.50 0.09 1.25 3.86 0.33 0.69 0.00 13.75 0.82 0.00 0.86 18.91 31.48 36.74 16 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 4.24 2.55 3.15 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 0.00 19.83 25.47 14.94 17 E2_Ac KnownBoundary 0 6.52 2.70 3.64 1.60 3.48 4.88 3.71 4.19 1.77 9.08 2.05 0.00 0.00 0.00 0.00 0.00 39.27 2.40 0.00 5.24 29.16 43.05 35.77 18 ER2b ExonRegion 0 4.23 4.07 7.35 1.36 2.68 7.34 9.27 5.19 2.47 12.62 1.93 0.00 4.69 0.00 5.80 0.00 59.42 3.70 0.00 4.26 48.48 81.26 85.16 19 ER2c ExonRegion 0 2.44 9.11 7.34 1.51 0.97 3.12 8.34 5.00 2.60 27.77 0.77 8.70 24.13 0.00 9.44 0.00 51.61 1.75 0.00 5.11 44.45 152.65 190.88 20 E2_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 E2a_E3a KnownJunction 0 0.00 5.53 11.32 1.43 0.00 5.68 0.00 11.87 2.40 45.07 0.00 6.30 39.61 0.00 10.51 0.00 59.28 3.69 0.00 3.26 59.24 246.40 131.03 22 ER2d ExonRegion 0 0.00 0.00 0.03 0.00 0.00 0.00 0.01 0.00 0.00 1.65 0.00 0.05 1.22 0.00 0.00 0.00 1.83 0.00 0.00 0.05 0.02 1.54 0.00 23 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 24 ER3a ExonRegion 0 5.34 10.01 14.03 1.59 2.97 10.92 14.48 13.92 6.46 47.38 1.03 35.06 92.88 0.64 11.32 0.00 132.29 7.67 0.00 14.27 61.34 322.72 153.28 25 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 0.00 0.00 0.00 0.00 0.00 0.00 8.04 0.00 0.00 0.00 0.00 16.84 0.00 26 E3a_E5a KnownJunction 0 6.82 5.99 9.93 1.66 0.00 0.00 21.02 16.84 7.90 61.78 0.00 24.01 92.04 0.00 5.69 0.00 78.73 11.11 0.00 14.00 73.52 282.29 196.68 27 ER4a ExonRegion 0 1.77 0.03 0.28 0.00 0.00 0.00 1.13 0.00 0.00 3.03 0.00 0.50 0.00 0.00 0.00 0.00 8.06 0.00 0.00 1.71 0.00 8.78 2.50 28 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 5.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER5a ExonRegion 0 9.61 14.58 18.28 4.42 3.77 4.10 17.83 12.76 5.58 57.33 2.10 61.72 204.68 0.06 16.07 0.00 151.24 4.94 0.00 19.02 63.54 449.28 258.85 30 E5a_E6a KnownJunction 0 21.11 21.31 11.35 1.27 8.49 0.00 32.99 12.69 6.66 75.78 0.00 69.02 248.68 0.00 38.94 0.00 210.38 4.81 0.00 21.03 64.62 484.23 303.72 31 ER6a ExonRegion 0 12.47 28.07 12.48 6.13 9.12 11.21 29.14 14.25 7.86 63.84 2.76 72.26 246.18 0.86 15.07 0.00 191.98 7.33 1.09 15.21 88.96 526.42 299.44 32 E6_Da NovelBoundary 1 0.00 25.98 10.47 1.56 15.20 21.35 28.44 1.93 5.09 55.07 0.00 34.06 189.27 0.00 9.52 0.00 93.31 1.74 0.00 10.48 40.46 403.83 202.82 33 E6b_E7a KnownJunction 0 2.89 24.07 12.86 7.13 29.71 14.48 30.91 8.42 8.51 80.02 2.68 126.19 283.59 0.00 15.33 0.00 163.63 2.57 0.00 8.37 58.87 559.74 290.32 34 ER6b ExonRegion 0 0.00 27.11 12.83 5.36 17.84 16.26 31.95 5.42 7.16 74.09 1.93 114.01 298.91 0.00 13.35 0.00 169.67 1.85 0.00 10.07 65.96 571.16 297.19 35 ER7a ExonRegion 0 9.66 23.56 21.55 9.07 9.73 11.62 30.54 15.37 12.62 85.01 1.40 102.26 338.76 0.60 16.89 0.00 175.06 5.51 1.44 15.72 63.11 706.11 340.52 36 E7a_E8a KnownJunction 0 13.04 21.51 21.76 9.19 25.13 5.00 42.93 15.85 11.28 92.32 0.00 93.93 318.00 0.00 27.07 0.00 164.84 7.13 0.00 18.15 46.15 599.72 251.22 37 ER8a ExonRegion 1 13.56 17.79 16.70 7.52 24.12 13.90 26.60 10.48 11.62 72.25 0.27 70.02 288.51 0.00 16.55 0.00 176.75 3.20 1.79 20.41 41.25 597.81 280.54 38 E8a_E9a KnownJunction 0 22.89 44.93 19.78 8.82 39.22 11.92 33.25 9.98 12.12 68.63 2.11 87.03 334.07 0.00 18.79 0.00 159.23 2.16 4.33 5.82 40.16 516.01 298.77 39 ER9a ExonRegion 0 24.17 51.36 22.54 5.48 22.96 18.04 53.50 17.41 13.90 79.96 0.87 100.51 299.81 0.00 25.33 0.00 198.98 7.85 7.16 18.30 55.78 788.87 370.43 40 E9b_E10a KnownJunction 0 18.08 14.27 16.59 8.59 16.47 19.53 47.30 17.00 6.60 79.48 0.00 157.55 277.42 0.00 36.34 0.00 219.92 9.24 0.00 14.70 62.33 612.40 216.74 41 ER9b ExonRegion 0 15.24 28.06 17.65 6.81 18.20 19.07 37.34 17.98 7.90 76.15 0.00 138.54 287.97 0.00 23.21 0.00 211.92 10.72 3.19 22.98 62.14 565.88 239.04 42 Ix_AR3 ActiveIntronRegion 0 3.79 9.14 4.33 1.49 3.15 0.27 4.90 2.09 1.35 6.88 0.00 0.00 2.96 0.00 2.02 0.00 4.37 1.76 0.00 2.50 5.51 10.12 25.94 43 ER10a ExonRegion 0 13.11 29.75 25.82 3.58 13.17 10.86 33.92 12.34 10.67 77.04 0.97 97.07 227.65 0.00 22.75 0.00 168.90 7.06 0.47 23.20 58.59 522.11 248.26 44 E10a_E11b KnownJunction 0 16.89 18.62 29.06 1.47 19.02 5.34 32.24 21.97 16.58 103.50 0.00 93.03 157.78 0.00 15.95 0.00 162.41 6.05 3.86 23.46 86.30 743.01 334.11 45 ER11a ExonRegion 0 0.10 1.88 0.33 1.00 0.15 0.09 1.59 0.97 0.51 1.74 0.00 4.45 5.54 0.00 0.14 0.00 7.95 0.07 0.03 1.34 0.84 12.32 6.35 46 E11_Ab KnownBoundary 0 0.00 6.31 0.00 0.00 0.00 0.00 0.00 2.42 1.74 1.26 0.00 6.00 0.00 0.00 0.00 0.00 14.03 0.00 0.00 0.00 0.00 5.20 6.83 47 ER11b ExonRegion 0 15.24 24.65 29.48 4.61 24.45 19.56 35.09 22.51 12.08 87.22 0.00 119.94 243.21 0.00 27.78 0.00 155.33 6.93 3.62 20.97 60.26 622.52 355.66 48 E11a_E12a KnownJunction 0 20.00 34.99 30.75 6.59 19.35 16.69 40.59 26.78 14.61 71.08 0.00 131.74 184.89 0.00 18.42 0.00 118.93 0.00 0.00 9.52 55.04 604.37 277.34 49 ER12a ExonRegion 0 17.21 24.19 20.67 7.53 14.23 18.43 40.63 18.73 6.82 72.93 0.95 114.59 218.66 0.12 15.17 0.00 146.13 3.00 0.99 10.66 49.40 540.52 295.16 50 E12a_E13c KnownJunction 0 19.04 44.40 15.64 5.33 7.56 7.55 32.19 17.58 5.56 74.25 2.16 103.38 168.17 2.35 24.11 0.00 160.26 4.85 4.14 9.08 91.92 549.63 296.55 51 ER13a ExonRegion 0 0.51 3.06 0.71 0.00 0.00 0.44 1.59 1.33 0.22 3.31 0.23 4.66 1.91 0.00 0.00 0.00 3.66 0.00 0.00 2.37 1.46 8.28 3.02 52 E13_Ab KnownBoundary 0 0.00 0.00 3.13 0.00 0.00 0.00 0.00 2.55 0.00 7.49 0.00 6.30 0.00 0.00 0.00 0.00 8.98 0.00 0.00 3.26 0.00 0.00 8.71 53 ER13b ExonRegion 0 0.55 4.12 1.14 0.01 0.23 0.01 2.26 1.62 0.42 3.30 0.01 1.48 7.67 0.00 0.06 0.00 4.23 0.01 0.01 3.45 1.05 10.30 3.00 54 E13_Ac KnownBoundary 0 0.00 11.64 1.74 0.00 0.00 0.00 8.26 0.00 1.62 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.63 4.27 55 ER13c ExonRegion 0 22.06 42.22 24.35 4.70 8.18 14.26 24.47 22.92 4.96 82.91 2.64 97.75 185.98 0.64 22.26 0.00 159.20 7.07 1.75 14.18 81.37 523.92 260.32 56 E13a_E14a KnownJunction 0 13.04 31.31 13.75 4.73 7.56 33.16 31.62 16.06 0.00 92.57 4.00 122.74 152.75 0.00 31.65 0.00 181.67 4.23 3.48 17.45 110.15 589.74 254.13 57 ER14a ExonRegion 0 20.15 30.09 17.94 4.70 6.49 13.89 34.28 14.63 4.31 83.39 2.97 145.66 174.62 0.16 20.31 0.00 181.05 3.39 1.92 19.03 78.67 544.85 290.04 58 E14_Da KnownBoundary 0 21.34 27.63 20.70 6.79 15.70 5.45 41.73 13.64 3.18 77.31 5.05 97.98 148.04 2.24 9.52 0.00 150.26 2.24 4.14 28.89 74.44 494.58 322.25 59 ER14b ExonRegion 0 9.07 21.91 19.68 7.28 14.24 15.64 37.60 15.23 3.85 96.21 1.50 105.46 184.59 1.35 14.73 0.00 143.18 4.92 0.78 15.90 64.82 574.42 298.04 60 E14b_E15a KnownJunction 0 14.22 15.33 23.21 7.96 25.55 43.95 45.40 24.64 5.01 125.93 0.00 104.28 129.05 0.00 22.87 0.00 144.65 6.43 0.00 8.05 53.25 801.55 305.34 61 ER15a ExonRegion 0 18.45 34.84 34.26 6.86 16.62 14.23 26.47 16.47 4.64 91.51 2.48 119.64 99.25 0.48 25.52 0.00 140.31 4.66 1.14 20.78 52.78 629.06 248.83 62 E15_Da NovelBoundary 0 2.96 3.09 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 6.30 0.00 0.00 0.00 0.00 21.41 0.00 0.00 0.00 0.00 10.84 4.10 63 E15a_E16a KnownJunction 0 30.97 24.86 33.23 10.35 11.29 22.15 25.17 13.60 8.88 59.10 2.68 67.82 86.68 0.00 4.45 0.00 40.77 8.66 0.00 6.33 28.54 525.44 215.97 64 E15a_E16b KnownJunction 0 6.67 42.56 5.20 3.36 0.00 0.00 0.00 0.00 0.00 27.99 0.00 26.56 33.44 0.00 6.06 0.00 32.26 0.00 0.00 8.63 0.00 42.92 6.83 65 ER16a ExonRegion 0 17.00 37.44 33.28 6.19 14.27 23.90 40.35 9.79 8.86 59.00 2.24 61.02 60.75 0.44 13.26 0.00 59.57 4.78 0.00 12.33 62.72 748.05 256.75 66 E16_Da KnownBoundary 0 0.00 5.99 1.83 0.00 0.00 0.00 3.49 0.00 0.00 6.90 0.00 12.60 6.82 0.00 0.00 0.00 12.62 0.00 0.00 0.00 6.30 54.38 14.85 67 E16a_E16b KnownJunction 0 3.04 44.14 18.30 4.13 8.32 19.36 32.90 7.15 5.12 51.04 0.00 30.61 97.40 2.12 13.35 0.00 47.31 0.00 0.00 12.14 50.35 504.32 152.29 68 ER16b ExonRegion 0 2.54 7.04 1.50 0.76 1.29 2.04 5.83 1.31 1.11 9.67 0.41 8.16 9.22 0.00 0.65 0.00 5.14 0.19 0.17 3.78 1.78 35.52 9.69 69 E16_Ab KnownBoundary 0 3.70 41.51 6.71 0.00 0.00 0.00 19.39 2.51 1.65 19.50 0.00 12.00 13.31 0.00 4.45 0.00 3.65 0.00 0.00 5.62 0.00 31.41 15.62 70 ER16c ExonRegion 0 39.31 101.03 21.57 11.55 15.68 8.16 44.12 7.53 12.48 78.05 1.62 72.26 121.32 0.65 17.69 0.00 80.33 7.36 0.00 21.71 25.78 547.73 193.48 71 E16_Db KnownBoundary 0 0.00 2.43 0.00 0.00 0.00 0.00 1.94 0.00 0.00 10.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 3.15 16.35 0.00 72 E16b_E17b KnownJunction 0 63.42 75.51 31.40 14.38 24.36 6.70 54.59 12.65 9.40 75.00 2.00 73.97 138.95 2.47 9.64 0.00 60.96 10.11 0.00 30.81 23.17 454.11 218.19 73 ER16d ExonRegion 0 0.88 2.44 1.09 0.12 1.27 0.22 1.36 0.46 1.20 4.60 0.23 6.91 5.49 0.40 1.82 0.35 4.13 1.21 0.19 2.08 1.37 8.28 4.37 74 ER17a ExonRegion 0 2.16 12.65 2.70 1.06 1.08 1.55 1.77 1.46 0.06 8.79 0.01 3.68 3.48 0.01 0.46 0.00 5.47 0.03 0.00 0.08 1.55 18.85 2.14 75 E17_Ab KnownBoundary 0 7.26 19.86 2.96 2.00 3.74 0.00 2.25 4.31 0.00 8.11 0.00 12.15 13.64 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 13.90 4.18 76 ER17b ExonRegion 0 44.81 62.13 36.76 15.24 21.90 10.44 39.49 11.20 14.19 107.58 1.90 79.66 147.05 1.77 29.59 0.00 103.14 7.56 0.00 25.34 29.73 720.64 259.51 77 E17a_E18a KnownJunction 0 82.76 67.88 37.34 16.55 24.96 22.20 57.46 11.83 14.70 118.62 2.00 89.28 116.88 2.06 28.31 0.00 104.35 8.62 0.00 30.87 61.47 822.37 303.30 78 ER18a ExonRegion 0 38.10 89.54 38.15 9.02 16.92 18.60 52.71 16.89 9.38 96.53 2.01 66.88 103.18 0.97 29.65 0.00 115.34 11.30 0.00 17.77 47.39 583.21 281.02 79 E18a_E19a KnownJunction 0 53.49 146.22 35.36 10.72 4.24 12.32 73.40 25.22 5.32 100.49 4.69 44.11 106.49 0.00 40.42 0.00 159.05 5.84 0.00 12.34 51.77 717.11 267.87 80 ER18b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.00 81 ER19a ExonRegion 0 49.96 103.41 50.27 12.53 8.81 12.15 39.84 22.69 7.06 106.55 3.69 83.76 106.66 1.39 42.75 0.00 169.65 8.46 0.00 25.88 77.13 582.96 303.71 82 E19a_E20b KnownJunction 0 75.57 62.29 56.92 19.08 8.57 13.40 39.61 25.55 2.84 110.35 4.58 51.02 111.03 0.00 50.81 0.00 181.39 9.70 0.00 25.95 43.74 856.04 360.23 83 ER20a ExonRegion 0 14.82 12.71 13.48 4.43 2.68 2.29 8.94 5.19 1.85 26.95 0.97 14.07 25.80 0.00 13.06 0.00 47.86 3.23 0.00 7.98 12.67 196.37 93.24 84 ER20b ExonRegion 0 58.20 73.39 65.14 10.72 24.96 18.63 65.98 23.23 12.02 107.58 1.72 74.05 89.41 0.00 49.81 0.00 187.73 9.96 0.00 24.87 71.28 619.39 368.02 85 E20a_E21a KnownJunction 0 87.72 75.64 86.28 14.88 57.30 39.64 150.59 24.07 12.38 97.54 0.00 117.49 92.04 0.00 57.36 0.00 171.48 11.48 0.00 14.64 66.04 497.28 314.39 86 ER21a ExonRegion 0 48.63 126.61 69.81 17.52 33.45 13.12 54.07 30.78 9.09 110.59 0.31 94.92 237.37 0.43 50.15 0.00 86.09 4.08 0.77 12.32 34.61 601.58 185.72 87 E21_Da KnownBoundary 0 60.53 256.47 113.24 27.47 23.01 13.00 42.62 71.47 11.83 145.94 0.00 171.21 370.43 0.00 39.31 0.00 98.27 0.00 0.00 20.39 24.96 767.62 180.71 88 ER21b ExonRegion 0 68.15 192.48 96.64 27.19 34.34 15.37 47.55 37.39 9.06 128.22 0.00 122.02 336.20 0.00 67.79 0.00 67.83 0.22 2.34 17.80 19.47 698.05 168.42 89 E21_Db KnownBoundary 0 83.72 151.35 93.52 30.63 42.53 30.32 48.80 20.62 8.01 127.14 0.00 105.33 355.33 0.00 57.85 0.00 89.39 1.58 3.29 11.38 10.87 737.99 142.04 90 ER21c ExonRegion 0 64.93 89.15 73.52 13.56 29.81 19.00 48.75 32.22 7.06 112.76 0.54 88.34 164.00 0.00 62.43 0.00 68.08 1.70 0.03 10.62 17.78 595.42 128.50 91 ER21d ExonRegion 0 1.06 0.00 0.92 0.00 0.00 0.00 3.31 1.73 0.00 5.45 0.00 0.00 0.00 0.00 4.35 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.73