Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RARRES1 Gene 0 33.12 4.32 6.13 12.00 25.75 9.50 13.65 39.24 16.04 15.81 0.31 3.49 3.98 1.30 1.44 1.29 1.81 3.08 2.69 7.28 13.32 95.09 29.00 2 237696 Transcript 0 75.48 3.24 8.15 14.21 42.66 15.24 13.80 52.24 22.89 18.56 0.04 2.42 1.33 1.71 0.34 1.55 0.43 3.10 1.58 8.15 23.42 166.70 41.25 3 498640 Transcript 0 0.00 0.00 0.00 1.96 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 2.63 0.00 4 479756 Transcript 0 8.78 3.27 4.05 9.95 8.29 2.67 17.44 10.63 9.93 11.17 0.00 6.49 5.63 1.46 7.34 0.00 2.40 3.63 5.80 4.74 0.80 8.62 9.48 5 462663 Transcript 0 4.02 2.21 0.00 0.54 0.73 0.00 3.22 1.23 1.50 1.40 0.52 0.00 0.90 0.35 0.00 0.81 0.00 0.00 1.73 2.26 1.20 6.79 0.80 6 471444 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.05 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 1.04 0.00 1.28 0.60 0.66 1.60 0.00 0.00 2.52 3.51 0.00 0.00 0.00 1.59 0.50 0.00 0.00 2.30 0.78 4.18 1.62 2.04 2.87 8 E1_Ab KnownBoundary 0 0.00 0.00 1.77 1.86 0.00 2.90 0.00 2.51 12.18 12.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 9.14 0.00 0.00 3.84 9 ER1b ExonRegion 0 2.43 0.00 0.26 1.36 0.63 0.86 0.06 0.00 0.84 2.78 0.00 0.00 0.00 1.90 0.00 0.00 0.00 3.70 0.00 4.62 1.55 0.00 1.81 10 E1_Ac KnownBoundary 0 6.82 0.00 3.55 5.53 3.48 8.23 2.25 0.00 6.97 4.27 0.00 0.00 0.00 2.47 0.00 0.00 0.00 5.35 0.00 5.82 5.68 0.00 7.51 11 ER1c ExonRegion 0 5.58 1.06 1.29 1.16 2.08 2.11 2.16 3.02 2.00 1.15 0.00 0.00 0.00 0.37 0.25 0.00 0.02 1.52 0.55 2.26 5.72 17.34 13.41 12 E1a_E2a KnownJunction 0 36.23 0.00 9.20 10.12 8.23 8.57 13.43 32.04 9.61 4.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 0.00 3.07 24.34 58.91 42.85 13 E2_Aa NovelBoundary 0 2.89 0.00 3.08 4.56 0.00 0.00 5.70 6.86 0.00 6.80 4.74 6.30 0.00 7.42 0.00 8.72 0.00 0.00 0.00 7.73 0.00 3.12 11.27 14 ER2a ExonRegion 0 20.26 1.87 10.37 10.08 14.53 13.10 12.40 41.48 10.70 8.54 3.04 0.00 0.00 1.24 0.46 0.00 2.57 6.51 2.58 7.87 39.18 89.82 57.57 15 E2a_E3a KnownJunction 0 32.82 2.83 12.36 8.32 7.30 5.11 15.77 50.56 13.11 13.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 2.36 30.89 80.95 39.78 16 E2a_E5a KnownJunction 0 0.00 0.00 0.00 1.96 0.00 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.68 2.63 0.00 17 E3_Aa NovelBoundary 0 28.89 0.00 5.94 11.29 7.98 8.57 8.39 11.79 3.94 13.27 0.00 6.30 0.00 0.00 4.45 3.67 4.30 2.53 0.00 6.52 5.62 5.39 16.30 18 ER3a ExonRegion 0 38.61 7.81 10.97 17.65 17.69 17.75 8.54 61.25 21.77 17.28 0.81 5.45 9.38 0.10 3.23 5.27 6.07 3.16 9.81 14.76 34.44 114.76 57.88 19 E3_Ab KnownBoundary 0 93.42 22.04 14.58 25.67 25.38 23.57 17.36 81.04 33.85 24.63 2.68 23.71 5.84 0.00 6.18 3.25 9.35 4.68 7.62 19.43 51.95 161.53 98.34 20 ER3b ExonRegion 0 54.65 7.36 13.65 28.31 35.98 20.51 20.61 87.58 30.84 31.31 0.36 8.34 0.91 1.33 1.17 0.95 5.57 5.68 5.59 15.97 41.51 192.48 77.93 21 E3_Da NovelBoundary 0 6.59 3.35 1.77 25.47 4.33 2.67 5.87 21.89 12.21 8.86 0.00 12.15 0.00 0.00 4.45 7.35 3.46 0.00 0.00 17.77 3.15 2.88 16.90 22 E3a_E5a KnownJunction 0 72.01 15.13 1.12 30.70 35.48 10.56 6.05 93.53 33.22 14.91 0.00 0.00 6.82 0.00 0.00 0.00 4.21 6.96 13.84 8.95 19.46 255.83 36.28 23 E4_Aa NovelBoundary 0 18.45 2.70 1.83 2.06 0.00 5.39 13.82 0.00 8.10 2.42 0.00 0.00 0.00 0.00 0.00 4.19 4.02 2.11 0.00 2.36 2.78 3.12 8.02 24 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.10 0.00 0.00 0.00 0.00 3.66 0.00 0.00 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4_Da NovelBoundary 0 11.11 2.70 6.18 3.10 3.14 0.00 12.32 2.05 10.42 9.59 2.26 0.00 13.64 3.00 0.00 3.16 0.00 0.00 4.05 0.00 8.28 0.00 8.28 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E5_Aa NovelBoundary 0 7.41 9.93 4.14 10.79 4.07 2.73 16.61 13.72 6.28 20.58 0.00 0.00 13.15 0.00 4.70 0.00 0.00 5.02 0.00 8.95 0.00 5.57 7.68 28 ER5a ExonRegion 0 46.14 6.66 16.21 24.76 39.98 22.75 16.54 88.73 33.17 31.83 0.88 11.72 6.90 0.57 3.63 1.32 3.30 9.75 9.50 15.23 30.59 192.14 74.48 29 E5_Da KnownBoundary 0 43.12 6.31 7.13 26.17 13.41 10.28 8.13 49.95 29.98 22.64 0.00 12.45 0.00 0.00 4.45 0.00 0.00 11.98 0.00 8.82 12.85 117.57 45.24 30 E5_Db KnownBoundary 0 6.67 3.29 0.00 7.26 8.32 0.00 16.69 8.87 3.47 8.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.21 0.00 3.26 0.00 8.51 3.24 31 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E5b_E7a KnownJunction 0 112.09 5.46 7.33 15.12 50.85 7.95 6.14 51.67 31.83 16.25 0.00 0.00 0.00 0.00 0.00 4.36 0.00 4.44 4.42 3.26 14.46 179.23 72.56 33 ER5b ExonRegion 0 76.78 8.93 11.98 30.13 37.91 11.10 17.29 58.58 39.32 30.14 0.00 6.98 2.08 0.09 3.55 2.97 0.00 14.58 3.19 11.11 16.77 182.08 71.95 34 ER5c ExonRegion 0 8.78 3.27 4.05 9.95 8.29 2.67 17.44 10.63 9.93 11.17 0.00 6.49 5.63 1.46 7.34 0.00 2.40 3.63 5.80 4.74 0.80 8.62 9.48 35 E5_Dc NovelBoundary 0 6.67 6.58 1.60 5.23 12.48 13.80 4.02 3.78 19.79 12.71 0.00 0.00 0.00 2.47 0.00 0.00 0.00 5.89 8.47 6.07 0.00 5.82 11.01 36 I5_AR2 ActiveIntronRegion 0 10.21 15.30 4.37 6.81 5.58 0.00 13.47 15.26 14.18 17.20 1.93 3.58 1.84 0.00 4.04 2.97 0.00 3.53 0.00 4.53 0.00 18.30 7.28 37 I5_SR3 SilentIntronRegion 0 8.43 8.39 3.92 8.20 12.57 1.95 13.41 14.42 12.58 16.41 0.67 6.48 6.29 0.93 2.30 1.68 0.25 3.38 2.18 11.88 0.67 11.79 9.34 38 ER6a ExonRegion 0 8.04 4.41 0.00 1.07 1.45 0.00 6.44 0.00 3.00 2.79 1.05 0.00 1.80 0.71 0.00 1.61 0.00 0.00 3.46 4.53 2.39 13.59 1.59 39 E6_Da NovelBoundary 0 6.37 0.00 3.05 10.12 11.88 0.00 12.98 20.50 3.85 6.77 0.00 30.46 0.00 0.00 4.45 0.00 0.00 3.81 0.00 11.76 7.85 22.35 0.00 40 I6 Intron 0 9.36 6.91 2.48 1.38 8.19 0.62 4.95 8.76 5.02 2.32 0.66 4.85 7.97 0.55 1.51 3.03 1.12 0.00 2.17 4.34 2.23 21.25 3.99 41 I6_SR1 SilentIntronRegion 0 9.48 7.01 2.52 1.40 8.30 0.63 5.02 8.88 5.09 2.36 0.67 4.91 7.99 0.56 1.53 3.07 1.14 0.00 2.20 4.40 2.26 21.54 4.05 42 E7_Aa NovelBoundary 0 15.93 9.80 4.32 3.40 6.96 2.27 41.47 14.95 4.54 4.30 2.58 0.00 8.28 0.00 0.00 0.00 4.21 2.24 0.00 5.82 3.15 8.39 7.34 43 ER7a ExonRegion 0 95.98 4.75 12.80 16.66 54.41 21.22 15.49 69.52 31.76 23.50 0.00 8.52 0.00 2.78 0.00 1.27 0.00 3.81 0.81 14.05 28.61 247.58 47.03 44 E7_Da NovelBoundary 0 9.63 0.00 1.69 1.30 7.47 5.79 26.81 4.52 3.30 3.73 0.00 0.00 13.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 8.54 45 E7a_E8a KnownJunction 0 118.98 0.00 12.54 22.94 64.86 33.73 26.63 85.31 26.74 27.40 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.57 0.00 11.82 60.23 272.00 54.03 46 E8_Aa NovelBoundary 0 7.56 3.35 3.67 3.56 4.33 0.00 21.99 2.55 4.57 5.29 2.47 0.00 0.00 0.00 0.00 3.33 4.02 0.00 0.00 3.26 0.00 2.39 0.00 47 ER8a ExonRegion 0 49.31 6.00 6.78 15.74 42.51 11.69 20.75 54.70 21.59 22.12 0.21 3.60 6.63 1.70 1.21 2.11 2.16 2.39 1.91 7.44 12.17 132.67 29.76 48 IG41 Intergenic 0 8.44 9.96 6.79 10.87 10.74 7.12 11.97 7.10 7.83 7.36 4.09 13.25 11.10 5.63 6.15 4.77 2.65 1.95 3.07 8.65 0.77 7.86 4.01 49 IG41_AR7 ActiveIntergenicRegion 0 14.82 8.47 9.80 7.95 7.58 0.00 11.92 1.73 4.32 5.73 1.93 4.33 4.69 0.00 0.00 0.00 0.00 1.85 3.19 9.93 0.00 5.21 2.94 50 IG41_AR5 ActiveIntergenicRegion 0 44.45 18.35 7.02 13.89 35.05 19.77 35.59 13.07 6.69 7.13 6.51 4.33 16.59 2.46 16.70 9.06 4.19 5.68 7.23 10.95 0.00 11.03 10.89 51 IG41_AR4 ActiveIntergenicRegion 0 65.61 20.67 14.98 14.23 42.81 25.67 35.31 12.20 10.36 10.83 9.77 2.16 7.04 7.76 16.44 14.86 6.42 6.57 16.28 13.36 0.00 16.55 16.97 52 IG41_SR4 SilentIntergenicRegion 0 13.01 15.37 10.29 15.34 15.94 12.32 12.43 10.00 10.11 12.03 4.75 11.46 6.71 7.76 10.19 7.34 3.00 3.49 3.71 10.04 1.66 9.98 3.54 53 IG41_AR3 ActiveIntergenicRegion 0 6.43 15.45 8.13 16.30 15.09 11.55 18.24 13.97 14.58 11.87 10.07 34.29 31.08 13.60 10.70 9.03 5.73 3.20 4.84 15.93 1.67 11.99 6.37 54 IG41_SR2 SilentIntergenicRegion 0 8.47 0.00 0.00 0.00 0.00 5.50 17.21 0.00 0.00 0.00 0.00 0.00 14.07 0.00 0.00 0.00 0.00 0.00 0.00 10.64 0.00 6.25 0.00 55 IG41_SR1 SilentIntergenicRegion 0 6.80 0.00 0.00 0.00 2.06 11.43 16.57 0.00 0.00 0.00 0.00 24.48 17.14 12.74 12.67 5.20 0.00 1.35 10.54 1.23 0.00 1.28 0.00